Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LARS2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23395 leucyl-tRNA synthetase 2, mitochondrial chr3 + 45425074 - 45430574 45430074 Transcription Factor Binding Sites   Download all TFBS in the LARS2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 45429701 45429714 1.0E-05 GAGGTCGAGACCTG 14 POU4F2_POU_full_monomeric_16_1 SELEX + 45428776 45428791 2.0E-06 ATAAATAATTCATAAG 16 IRF7_IRF_DBD_dimeric_14_1 SELEX + 45430310 45430323 0.0E+00 TCGAAACTGAAAAT 14 CEBPD_bZIP_DBD_dimeric_10_1 SELEX + 45429643 45429652 0.0E+00 ATTACGCAAT 10 IRF8_IRF_full_dimeric_14_1 SELEX + 45430310 45430323 1.0E-06 TCGAAACTGAAAAT 14 CEBPG_bZIP_full_dimeric_10_1 SELEX + 45429643 45429652 0.0E+00 ATTACGCAAT 10 TBX1_TBX_DBD_dimeric_23_1 SELEX + 45429558 45429580 6.0E-06 CAGCACACTTGCCAGGTGAGAAA 23 TBX1_TBX_DBD_dimeric_23_1 SELEX - 45429558 45429580 5.0E-06 TTTCTCACCTGGCAAGTGTGCTG 23 ZNF435_C2H2_full_dimeric_18_1 SELEX - 45430067 45430084 8.0E-06 CATGTTGTCAAAACAGCA 18 POU4F3_POU_DBD_monomeric_16_1 SELEX + 45428776 45428791 0.0E+00 ATAAATAATTCATAAG 16 IRF1_MA0050.1 JASPAR + 45430312 45430323 7.0E-06 GAAACTGAAAAT 12 POU6F2_POU_DBD_dimeric_16_1 SELEX - 45428776 45428791 1.0E-05 CTTATGAATTATTTAT 16 CEBPB_bZIP_full_dimeric_10_1 SELEX + 45429643 45429652 0.0E+00 ATTACGCAAT 10 CEBPB_bZIP_full_dimeric_10_1 SELEX - 45429643 45429652 9.0E-06 ATTGCGTAAT 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 45429641 45429653 7.0E-06 GGATTACGCAATA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 45429640 45429653 2.0E-06 AGGATTACGCAATA 14 YY2_C2H2_full_monomeric_11_1 SELEX - 45430079 45430089 8.0E-06 GCCGCCATGTT 11 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 45429642 45429653 9.0E-06 GATTACGCAATA 12 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 45429642 45429653 6.0E-06 TATTGCGTAATC 12 POU1F1_POU_DBD_monomeric_17_1 SELEX - 45428775 45428791 0.0E+00 CTTATGAATTATTTATT 17 IRF9_IRF_full_trimeric_15_1 SELEX + 45430309 45430323 1.0E-06 TTCGAAACTGAAAAT 15 HLF_MA0043.1 JASPAR + 45429642 45429653 1.0E-06 GATTACGCAATA 12 IRF4_IRF_full_dimeric_15_1 SELEX + 45430310 45430324 0.0E+00 TCGAAACTGAAAATA 15 IRF5_IRF_full_dimeric_14_1 SELEX + 45430310 45430323 1.0E-06 TCGAAACTGAAAAT 14 IRF3_IRF_full_trimeric_21_1 SELEX + 45430304 45430324 2.0E-06 GCAGTTTCGAAACTGAAAATA 21 CEBPE_bZIP_DBD_dimeric_10_1 SELEX + 45429643 45429652 0.0E+00 ATTACGCAAT 10 V_TST1_02_M01316 TRANSFAC + 45428774 45428790 3.0E-06 CAATAAATAATTCATAA 17 V_DBX1_01_M01483 TRANSFAC + 45428774 45428790 4.0E-06 CAATAAATAATTCATAA 17 V_DBX1_01_M01483 TRANSFAC - 45428774 45428790 1.0E-06 TTATGAATTATTTATTG 17 V_DBX1_01_M01483 TRANSFAC + 45428777 45428793 7.0E-06 TAAATAATTCATAAGTT 17 V_POU3F3_01_M03090 TRANSFAC - 45428777 45428793 1.0E-06 AACTTATGAATTATTTA 17 V_POU3F3_01_M03090 TRANSFAC + 45428778 45428794 7.0E-06 AAATAATTCATAAGTTT 17 V_ALX4_01_M00619 TRANSFAC - 45429806 45429818 4.0E-06 CCTCAGAATAAAC 13 V_SP1_Q6_01_M00931 TRANSFAC - 45429957 45429966 4.0E-06 GGGGCGGGGC 10 V_OCTAMER_01_M01324 TRANSFAC - 45428777 45428793 1.0E-06 AACTTATGAATTATTTA 17 V_OCTAMER_01_M01324 TRANSFAC + 45428778 45428794 7.0E-06 AAATAATTCATAAGTTT 17 V_IRF_Q6_01_M00972 TRANSFAC + 45430312 45430322 2.0E-06 GAAACTGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 45430310 45430325 4.0E-06 TCGAAACTGAAAATAT 16 V_CEBP_Q2_M00190 TRANSFAC - 45429641 45429654 2.0E-06 ATATTGCGTAATCC 14 V_SP1_02_M01303 TRANSFAC - 45429621 45429631 3.0E-06 GGGGCGGGGGG 11 V_CEBPB_01_M00109 TRANSFAC + 45428818 45428831 4.0E-06 GAGTGATGAAATCT 14 V_RPC155_01_M01798 TRANSFAC + 45429697 45429712 7.0E-06 TCAAGAGGTCGAGACC 16 V_RPC155_01_M01798 TRANSFAC - 45429747 45429762 2.0E-06 CCCAGGGTTCGAATCC 16 V_ZNF219_01_M01122 TRANSFAC + 45429619 45429630 5.0E-06 CACCCCCCGCCC 12 V_CEBPE_Q6_M01868 TRANSFAC - 45428820 45428833 0.0E+00 CAAGATTTCATCAC 14 V_CART1_01_M00416 TRANSFAC - 45429848 45429865 7.0E-06 AAATTATTACAGTTATAG 18 V_HNF1_Q6_M00790 TRANSFAC - 45428773 45428790 8.0E-06 TTATGAATTATTTATTGC 18 V_SOX7_04_M02911 TRANSFAC - 45429675 45429696 1.0E-06 TTCCTAATTGACTGCATGATGA 22 V_SP4_03_M02810 TRANSFAC + 45430018 45430034 8.0E-06 GGTCCCGCCCCCGTCTG 17 V_CEBPD_Q6_M00621 TRANSFAC - 45428819 45428830 5.0E-06 GATTTCATCACT 12 V_CEBPB_02_M00117 TRANSFAC - 45429641 45429654 1.0E-06 ATATTGCGTAATCC 14 V_SP1_Q6_M00196 TRANSFAC - 45429956 45429968 7.0E-06 GCGGGGCGGGGCG 13 V_IRF_Q6_M00772 TRANSFAC - 45430312 45430326 1.0E-06 GATATTTTCAGTTTC 15 V_OCT1_04_M00138 TRANSFAC + 45428775 45428797 3.0E-06 AATAAATAATTCATAAGTTTTAA 23 V_REX1_03_M01744 TRANSFAC + 45430079 45430090 2.0E-06 AACATGGCGGCG 12 V_PIT1_01_M01465 TRANSFAC + 45428774 45428790 9.0E-06 CAATAAATAATTCATAA 17 V_MEF2_04_M00233 TRANSFAC - 45430064 45430085 7.0E-06 CCATGTTGTCAAAACAGCAACT 22 V_IRF4_03_M02768 TRANSFAC - 45430303 45430317 0.0E+00 AGTTTCGAAACTGCA 15 V_IRF4_03_M02768 TRANSFAC + 45430306 45430320 0.0E+00 AGTTTCGAAACTGAA 15 V_NCX_02_M01420 TRANSFAC - 45428774 45428790 2.0E-06 TTATGAATTATTTATTG 17 V_NCX_02_M01420 TRANSFAC + 45428777 45428793 2.0E-06 TAAATAATTCATAAGTT 17 V_ISGF3G_03_M02771 TRANSFAC + 45430305 45430319 3.0E-06 CAGTTTCGAAACTGA 15 V_SP3_Q3_M00665 TRANSFAC - 45429624 45429637 7.0E-06 AGCCCTGGGGCGGG 14 V_IRF7_01_M00453 TRANSFAC + 45430309 45430326 2.0E-06 TTCGAAACTGAAAATATC 18 V_SP4_Q5_M01273 TRANSFAC + 45429957 45429967 2.0E-06 GCCCCGCCCCG 11 V_YY1_03_M02044 TRANSFAC - 45430078 45430089 1.0E-06 GCCGCCATGTTG 12 V_CEBPA_01_M00116 TRANSFAC - 45429641 45429654 6.0E-06 ATATTGCGTAATCC 14 V_ZBTB4_04_M02929 TRANSFAC + 45429848 45429863 4.0E-06 CTATAACTGTAATAAT 16 V_BDP1_01_M01796 TRANSFAC + 45429747 45429758 0.0E+00 GGATTCGAACCC 12 V_STAT1STAT1_Q3_M01212 TRANSFAC - 45430922 45430934 2.0E-06 CTTTCACGGAAGA 13 V_OCT1_06_M00162 TRANSFAC - 45428800 45428813 1.0E-05 CAGAATGGCATGCA 14 V_IRF1_Q6_01_M01881 TRANSFAC - 45430311 45430324 0.0E+00 TATTTTCAGTTTCG 14 V_SOX8_03_M02808 TRANSFAC - 45428774 45428790 3.0E-06 TTATGAATTATTTATTG 17 V_DMRT2_01_M01147 TRANSFAC + 45428848 45428863 6.0E-06 GGATGTGAACCATTGT 16 V_VDR_Q3_M00444 TRANSFAC - 45430003 45430017 2.0E-06 GGGGAAGGGAGGAGA 15 V_HLF_01_M00260 TRANSFAC + 45429643 45429652 3.0E-06 ATTACGCAAT 10 V_SOX1_03_M02802 TRANSFAC + 45428778 45428793 2.0E-06 AAATAATTCATAAGTT 16 V_OG2_02_M01441 TRANSFAC + 45429682 45429698 4.0E-06 GCAGTCAATTAGGAATC 17 V_IRXB3_01_M01377 TRANSFAC - 45430400 45430416 6.0E-06 AAACTACGTGTATATGT 17 V_IRXB3_01_M01377 TRANSFAC + 45430401 45430417 8.0E-06 CATATACACGTAGTTTT 17 V_ZID_01_M00085 TRANSFAC + 45430878 45430890 8.0E-06 CGGCTCCAGCATT 13 V_CEBPE_01_M01772 TRANSFAC + 45429643 45429652 1.0E-06 ATTACGCAAT 10 V_CEBPE_01_M01772 TRANSFAC - 45429643 45429652 2.0E-06 ATTGCGTAAT 10 V_BRF1_01_M01747 TRANSFAC - 45429746 45429758 0.0E+00 GGGTTCGAATCCC 13 V_PAX4_04_M00380 TRANSFAC + 45428762 45428791 9.0E-06 GAAAAATTTCAGCAATAAATAATTCATAAG 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.