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SYNE1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23345 spectrin repeat containing, nuclear envelope 1 chr6 - 152957486 - 152963534 152957986 Transcription Factor Binding Sites   Download all TFBS in the SYNE1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX + 152958214 152958225 8.0E-06 GCCACACCCCCT 12 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 152956320 152956339 5.0E-06 TTGACCTCATTTAAGAACTC 20 SP3_C2H2_DBD_monomeric_11_1 SELEX + 152958214 152958224 7.0E-06 GCCACACCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 152958214 152958224 4.0E-06 GCCACACCCCC 11 TBX20_TBX_DBD_dimeric_19_1 SELEX + 152956110 152956128 4.0E-06 AGTTGTGAAAATGCCACCA 19 TBX20_TBX_DBD_dimeric_19_1 SELEX + 152956156 152956174 3.0E-06 TCCTGTGACAGTCACACCT 19 TBX20_TBX_DBD_dimeric_19_1 SELEX - 152956156 152956174 1.0E-06 AGGTGTGACTGTCACAGGA 19 Klf4_MA0039.2 JASPAR + 152956082 152956091 3.0E-06 AGGGTGTGGC 10 TBX1_TBX_DBD_dimeric_19_1 SELEX + 152956110 152956128 3.0E-06 AGTTGTGAAAATGCCACCA 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 152956110 152956128 3.0E-06 TGGTGGCATTTTCACAACT 19 TBX1_TBX_DBD_dimeric_19_1 SELEX + 152956156 152956174 3.0E-06 TCCTGTGACAGTCACACCT 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 152956156 152956174 2.0E-06 AGGTGTGACTGTCACAGGA 19 RUNX3_RUNX_full_monomeric_10_1 SELEX - 152958952 152958961 7.0E-06 AAACCACAAC 10 ETV2_ETS_DBD_monomeric_11_1 SELEX + 152957501 152957511 7.0E-06 AAGCGGAAATG 11 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 152958953 152958961 8.0E-06 AAACCACAA 9 SP1_C2H2_DBD_monomeric_11_1 SELEX + 152958214 152958224 8.0E-06 GCCACACCCCC 11 Gata1_MA0035.2 JASPAR - 152957585 152957595 7.0E-06 ATAGATAAGGA 11 TBX15_TBX_DBD_dimeric_19_1 SELEX + 152956110 152956128 2.0E-06 AGTTGTGAAAATGCCACCA 19 TBX15_TBX_DBD_dimeric_19_1 SELEX - 152956110 152956128 1.0E-06 TGGTGGCATTTTCACAACT 19 TBX15_TBX_DBD_dimeric_19_1 SELEX + 152956156 152956174 1.0E-06 TCCTGTGACAGTCACACCT 19 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 152956332 152956347 7.0E-06 GAGGTCAATGAGGACA 16 RUNX1_MA0002.2 JASPAR + 152958951 152958961 3.0E-06 TGTTGTGGTTT 11 ETV6_ETS_full_dimeric_15_1 SELEX + 152957497 152957511 9.0E-06 CCACAAGCGGAAATG 15 V_FOXP1_01_M00987 TRANSFAC + 152958944 152958963 8.0E-06 TTTATTTTGTTGTGGTTTTA 20 V_FOXP1_01_M00987 TRANSFAC + 152958945 152958964 5.0E-06 TTATTTTGTTGTGGTTTTAT 20 V_CEBPG_Q6_M00622 TRANSFAC - 152956322 152956334 1.0E-06 CTCATTTAAGAAC 13 V_GEN_INI_B_M00315 TRANSFAC - 152956328 152956335 1.0E-05 CCTCATTT 8 V_TCF3_01_M01594 TRANSFAC + 152956175 152956187 8.0E-06 CCTTTCATTTCCA 13 V_TBX15_01_M01263 TRANSFAC + 152956110 152956128 8.0E-06 AGTTGTGAAAATGCCACCA 19 V_TBX15_01_M01263 TRANSFAC - 152956110 152956128 2.0E-06 TGGTGGCATTTTCACAACT 19 V_ZEC_01_M01081 TRANSFAC - 152956122 152956134 7.0E-06 CAAGGTTGGTGGC 13 V_HMGIY_Q3_M01010 TRANSFAC + 152958942 152958956 4.0E-06 AATTTATTTTGTTGT 15 V_BCL6_01_M01183 TRANSFAC - 152956317 152956332 9.0E-06 CATTTAAGAACTCTTT 16 V_AML3_Q6_M01856 TRANSFAC - 152958953 152958960 1.0E-05 AACCACAA 8 V_FOXJ1_04_M02854 TRANSFAC - 152958947 152958961 2.0E-06 AAACCACAACAAAAT 15 V_IRF_Q6_01_M00972 TRANSFAC - 152956176 152956186 8.0E-06 GGAAATGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 152956173 152956188 6.0E-06 TTGGAAATGAAAGGAG 16 V_GKLF_02_M01588 TRANSFAC - 152956080 152956091 8.0E-06 GCCACACCCTGT 12 V_MTERF_01_M01245 TRANSFAC - 152956125 152956138 5.0E-06 TGGGCAAGGTTGGT 14 V_GEN_INI3_B_M00314 TRANSFAC - 152956328 152956335 1.0E-05 CCTCATTT 8 V_RFXDC2_04_M02894 TRANSFAC - 152958961 152958977 1.0E-06 TTGCCTGGATACCATAA 17 V_TBX18_01_M01262 TRANSFAC + 152956110 152956128 0.0E+00 AGTTGTGAAAATGCCACCA 19 V_RUNX1_01_M02257 TRANSFAC + 152958951 152958961 3.0E-06 TGTTGTGGTTT 11 V_AML2_01_M01759 TRANSFAC - 152958953 152958960 1.0E-05 AACCACAA 8 V_ZBP89_Q4_M01816 TRANSFAC + 152957332 152957341 4.0E-06 CCCTCCCCCA 10 V_HSF1_01_M00146 TRANSFAC - 152957223 152957232 9.0E-06 AGAACTTTCG 10 V_FOXK1_04_M02856 TRANSFAC - 152958948 152958962 0.0E+00 AAAACCACAACAAAA 15 V_RFX4_04_M02893 TRANSFAC - 152958963 152958977 5.0E-06 TTGCCTGGATACCAT 15 V_IRF_Q6_M00772 TRANSFAC + 152956172 152956186 6.0E-06 CCTCCTTTCATTTCC 15 V_GATA1_09_M02254 TRANSFAC - 152957585 152957595 7.0E-06 ATAGATAAGGA 11 V_BLIMP1_Q6_M01066 TRANSFAC - 152957325 152957340 5.0E-06 GGGGGAGGGAAATGGC 16 V_GABPBETA_Q3_M01876 TRANSFAC + 152957502 152957512 5.0E-06 AGCGGAAATGA 11 V_FAC1_01_M00456 TRANSFAC - 152958947 152958960 1.0E-06 AACCACAACAAAAT 14 V_TAL1_01_M01591 TRANSFAC + 152957583 152957595 1.0E-05 TCTCCTTATCTAT 13 V_FOXL1_02_M02857 TRANSFAC - 152958941 152958956 4.0E-06 ACAACAAAATAAATTC 16 V_FOXL1_02_M02857 TRANSFAC - 152958946 152958961 1.0E-06 AAACCACAACAAAATA 16 V_FOXJ3_06_M02855 TRANSFAC - 152958941 152958957 8.0E-06 CACAACAAAATAAATTC 17 V_FOXJ3_06_M02855 TRANSFAC - 152958946 152958962 1.0E-06 AAAACCACAACAAAATA 17 V_CBF_01_M01079 TRANSFAC + 152958949 152958964 4.0E-06 TTTGTTGTGGTTTTAT 16 V_GEN_INI2_B_M00313 TRANSFAC - 152956328 152956335 1.0E-05 CCTCATTT 8 V_TBX15_02_M01264 TRANSFAC + 152956102 152956119 9.0E-06 AGAGCTGGAGTTGTGAAA 18 V_ZFP281_01_M01597 TRANSFAC - 152957331 152957341 9.0E-06 TGGGGGAGGGA 11 V_TBX22_01_M01195 TRANSFAC + 152956110 152956128 1.0E-06 AGTTGTGAAAATGCCACCA 19 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 152958954 152958961 1.0E-05 TGTGGTTT 8 V_EKLF_Q5_M01874 TRANSFAC - 152956081 152956090 2.0E-06 CCACACCCTG 10 V_RFX3_05_M02892 TRANSFAC - 152958959 152958981 8.0E-06 GACTTTGCCTGGATACCATAAAA 23 V_UF1H3BETA_Q6_M01068 TRANSFAC + 152957364 152957377 8.0E-06 GGTGGAGGAAGGGA 14 V_ZFP128_04_M02932 TRANSFAC + 152957202 152957215 9.0E-06 CGTATCTTTATAAA 14 V_DMRT5_01_M01150 TRANSFAC + 152958871 152958885 6.0E-06 ATTTGTATCTTTGGC 15 V_GATA1_06_M00347 TRANSFAC - 152957586 152957595 2.0E-06 ATAGATAAGG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.