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VPS39 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23339 vacuolar protein sorting 39 homolog (S. cerevisiae) chr15 - 42500002 - 42505502 42500502 Transcription Factor Binding Sites   Download all TFBS in the VPS39 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 42498809 42498817 2.0E-06 ATTAATCCC 9 Pax5_MA0014.1 JASPAR + 42498782 42498801 5.0E-06 AGCTAAGTCAAGTGTAGCCA 20 NEUROD2_bHLH_full_dimeric_10_1 SELEX + 42498825 42498834 8.0E-06 AACATATGTC 10 NEUROD2_bHLH_full_dimeric_10_1 SELEX - 42498825 42498834 4.0E-06 GACATATGTT 10 ERG_ETS_full_dimeric_14_1 SELEX - 42500500 42500513 9.0E-06 GCAGGAAGTCCGGG 14 PITX1_homeodomain_full_monomeric_8_1 SELEX + 42498810 42498817 1.0E-05 TTAATCCC 8 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 42498825 42498834 4.0E-06 AACATATGTC 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 42498825 42498834 6.0E-06 GACATATGTT 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 42498880 42498889 9.0E-06 GACATATGCT 10 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX + 42498824 42498835 2.0E-06 AAACATATGTCC 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 42498824 42498835 5.0E-06 GGACATATGTTT 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 42498879 42498890 5.0E-06 AGACATATGCTG 12 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 42500300 42500316 4.0E-06 TTTGCAGAGGCAGCTTT 17 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 42498825 42498834 3.0E-06 AACATATGTC 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 42498825 42498834 5.0E-06 GACATATGTT 10 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 42500298 42500318 5.0E-06 GATTTGCAGAGGCAGCTTTTC 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 42500298 42500318 4.0E-06 GAAAAGCTGCCTCTGCAAATC 21 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 42498810 42498817 1.0E-05 TTAATCCC 8 Atoh1_bHLH_DBD_dimeric_10_1 SELEX + 42498825 42498834 1.0E-06 AACATATGTC 10 Atoh1_bHLH_DBD_dimeric_10_1 SELEX - 42498825 42498834 3.0E-06 GACATATGTT 10 GSC_homeodomain_full_monomeric_10_1 SELEX + 42498809 42498818 8.0E-06 ATTAATCCCT 10 MAFG_bZIP_full_dimeric_21_1 SELEX + 42500298 42500318 5.0E-06 GATTTGCAGAGGCAGCTTTTC 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 42500298 42500318 7.0E-06 GAAAAGCTGCCTCTGCAAATC 21 SRF_MADS_full_dimeric_16_1 SELEX + 42500646 42500661 1.0E-05 TTACCATAGAAGGAAC 16 SOX18_HMG_full_dimeric_15_3 SELEX + 42496313 42496327 8.0E-06 ATAAATTCCATTTCT 15 NEUROG2_bHLH_full_dimeric_10_1 SELEX + 42498825 42498834 0.0E+00 AACATATGTC 10 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 42498825 42498834 2.0E-06 GACATATGTT 10 NEUROG2_bHLH_full_dimeric_10_1 SELEX + 42498880 42498889 8.0E-06 AGCATATGTC 10 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 42498880 42498889 9.0E-06 GACATATGCT 10 FLI1_ETS_full_monomeric_14_1 SELEX - 42500500 42500513 8.0E-06 GCAGGAAGTCCGGG 14 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 42498825 42498834 9.0E-06 AACATATGTC 10 OLIG2_bHLH_full_dimeric_10_1 SELEX + 42498825 42498834 4.0E-06 AACATATGTC 10 OLIG2_bHLH_full_dimeric_10_1 SELEX - 42498825 42498834 7.0E-06 GACATATGTT 10 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 42496309 42496319 8.0E-06 TGTAATAAATT 11 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 42496395 42496406 6.0E-06 TAACATGGCAAA 12 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 42498825 42498834 4.0E-06 AACATATGTC 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 42498825 42498834 9.0E-06 GACATATGTT 10 V_OBOX6_01_M01445 TRANSFAC - 42498808 42498822 1.0E-06 TGAAAGGGATTAATG 15 V_ZFP187_03_M02830 TRANSFAC + 42498735 42498748 4.0E-06 CTATGTGCTAATGG 14 V_NFKB_Q6_01_M00774 TRANSFAC + 42500046 42500061 5.0E-06 GCAAGGGGAACTCCCC 16 V_BCL6_Q3_01_M02085 TRANSFAC + 42500314 42500323 5.0E-06 TTTTCTAGGA 10 V_APOLYA_B_M00310 TRANSFAC + 42496312 42496326 0.0E+00 AATAAATTCCATTTC 15 V_OBOX5_05_M03066 TRANSFAC - 42498805 42498821 9.0E-06 GAAAGGGATTAATGCAG 17 V_TCFE2A_04_M02927 TRANSFAC - 42498821 42498837 7.0E-06 AAGGACATATGTTTCTG 17 V_OSF2_Q6_M00731 TRANSFAC + 42496352 42496359 1.0E-05 ACCACAAA 8 V_SOX40_04_M02908 TRANSFAC + 42498892 42498907 0.0E+00 TAGTATTATAATCTGT 16 V_SOX40_04_M02908 TRANSFAC - 42498892 42498907 0.0E+00 ACAGATTATAATACTA 16 V_SRY_07_M02813 TRANSFAC + 42498892 42498907 1.0E-06 TAGTATTATAATCTGT 16 V_SRY_07_M02813 TRANSFAC - 42498892 42498907 1.0E-06 ACAGATTATAATACTA 16 V_PLAGL1_04_M02890 TRANSFAC - 42498844 42498860 1.0E-05 ATGAGGGGGTACCCAAC 17 V_OBOX1_01_M01450 TRANSFAC - 42498806 42498822 2.0E-06 TGAAAGGGATTAATGCA 17 V_SOX30_03_M02804 TRANSFAC - 42500571 42500586 8.0E-06 ACAAAACAATTCATTT 16 V_BCL6_01_M01183 TRANSFAC - 42496357 42496372 2.0E-06 TATCTTACTTATCTTT 16 V_SOX11_04_M02899 TRANSFAC + 42500574 42500587 1.0E-06 TGAATTGTTTTGTT 14 V_IRF3_05_M02767 TRANSFAC + 42500003 42500016 7.0E-06 TAAAAAGGAAAGCT 14 V_SOX21_03_M02803 TRANSFAC + 42498892 42498907 3.0E-06 TAGTATTATAATCTGT 16 V_SOX21_03_M02803 TRANSFAC - 42498892 42498907 8.0E-06 ACAGATTATAATACTA 16 V_BARBIE_01_M00238 TRANSFAC + 42500039 42500053 8.0E-06 AGCAAAAGCAAGGGG 15 V_SOX13_03_M02797 TRANSFAC - 42500572 42500587 6.0E-06 AACAAAACAATTCATT 16 V_GC_01_M00255 TRANSFAC - 42500541 42500554 3.0E-06 AAGGGGCGGGACTT 14 V_SOX7_03_M02807 TRANSFAC - 42500568 42500589 3.0E-06 GCAACAAAACAATTCATTTAGA 22 V_OBOX5_02_M01480 TRANSFAC - 42498805 42498821 9.0E-06 GAAAGGGATTAATGCAG 17 V_SPI1_03_M02078 TRANSFAC - 42503025 42503034 1.0E-05 AGAGGAACTG 10 V_PAX9_B_M00329 TRANSFAC - 42496375 42496398 0.0E+00 GTTACCCAACGAAGGGAAGTGACT 24 V_IRX4_01_M01410 TRANSFAC + 42496301 42496317 8.0E-06 CAACTTCATGTAATAAA 17 V_SP1_Q6_M00196 TRANSFAC - 42500542 42500554 9.0E-06 AAGGGGCGGGACT 13 V_CDX2_01_M01449 TRANSFAC + 42496306 42496321 9.0E-06 TCATGTAATAAATTCC 16 V_OBOX2_01_M01364 TRANSFAC - 42498806 42498822 3.0E-06 TGAAAGGGATTAATGCA 17 V_BCL6_Q3_M01171 TRANSFAC + 42500314 42500323 5.0E-06 TTTTCTAGGA 10 V_SREBP_Q6_M01168 TRANSFAC + 42500271 42500285 1.0E-06 CGGCTCACCCCAGGC 15 V_SRF_Q5_02_M01007 TRANSFAC - 42500645 42500663 2.0E-06 TTGTTCCTTCTATGGTAAG 19 V_MZF1_02_M00084 TRANSFAC - 42498850 42498862 5.0E-06 GGATGAGGGGGTA 13 V_SRF_03_M01304 TRANSFAC + 42500647 42500659 7.0E-06 TACCATAGAAGGA 13 V_KAISO_01_M01119 TRANSFAC + 42500507 42500516 3.0E-06 TTCCTGCTAG 10 V_OTX2_Q3_M01719 TRANSFAC - 42498808 42498820 0.0E+00 AAAGGGATTAATG 13 V_IRX3_02_M01485 TRANSFAC + 42496301 42496317 1.0E-05 CAACTTCATGTAATAAA 17 V_SOX15_03_M02799 TRANSFAC - 42500571 42500587 1.0E-06 AACAAAACAATTCATTT 17 V_OBOX2_02_M03064 TRANSFAC - 42498806 42498822 3.0E-06 TGAAAGGGATTAATGCA 17 V_FOXJ3_06_M02855 TRANSFAC - 42500574 42500590 0.0E+00 AGCAACAAAACAATTCA 17 V_PITX1_01_M01484 TRANSFAC - 42498806 42498822 1.0E-06 TGAAAGGGATTAATGCA 17 V_GATA6_01_M00462 TRANSFAC + 42496357 42496366 1.0E-06 AAAGATAAGT 10 V_DOBOX5_01_M01463 TRANSFAC - 42498805 42498821 2.0E-06 GAAAGGGATTAATGCAG 17 V_OTX2_01_M01387 TRANSFAC - 42498805 42498821 7.0E-06 GAAAGGGATTAATGCAG 17 V_T3RBETA_Q6_01_M02119 TRANSFAC - 42498830 42498846 7.0E-06 AACTCAGCTAAGGACAT 17 V_TITF1_Q3_M00432 TRANSFAC + 42498787 42498796 2.0E-06 AGTCAAGTGT 10 V_SOX21_04_M02907 TRANSFAC + 42500572 42500588 2.0E-06 AATGAATTGTTTTGTTG 17 V_SRF_02_M01257 TRANSFAC + 42500647 42500664 7.0E-06 TACCATAGAAGGAACAAA 18 V_SOX8_03_M02808 TRANSFAC + 42500571 42500587 0.0E+00 AAATGAATTGTTTTGTT 17 V_SOX1_03_M02802 TRANSFAC - 42500568 42500583 1.0E-06 AAACAATTCATTTAGA 16 V_GSC_01_M01428 TRANSFAC + 42498805 42498821 5.0E-06 CTGCATTAATCCCTTTC 17 V_PITX2_01_M01447 TRANSFAC - 42498805 42498821 6.0E-06 GAAAGGGATTAATGCAG 17 V_SRY_05_M02917 TRANSFAC - 42500572 42500588 6.0E-06 CAACAAAACAATTCATT 17 V_HOXA10_01_M01464 TRANSFAC + 42496307 42496322 4.0E-06 CATGTAATAAATTCCA 16 V_SOX5_07_M02909 TRANSFAC + 42500571 42500587 1.0E-06 AAATGAATTGTTTTGTT 17 V_OBOX5_01_M01381 TRANSFAC - 42498805 42498821 4.0E-06 GAAAGGGATTAATGCAG 17 V_OBOX6_02_M03068 TRANSFAC - 42498808 42498822 1.0E-06 TGAAAGGGATTAATG 15 V_IRXB3_01_M01377 TRANSFAC + 42496301 42496317 8.0E-06 CAACTTCATGTAATAAA 17 V_OBOX3_02_M03065 TRANSFAC - 42498806 42498822 3.0E-06 TGAAAGGGATTAATGCA 17 V_SREBP1_Q5_M01173 TRANSFAC + 42500271 42500285 0.0E+00 CGGCTCACCCCAGGC 15 V_OTX1_01_M01366 TRANSFAC - 42498805 42498821 1.0E-06 GAAAGGGATTAATGCAG 17 V_OBOX6_06_M03067 TRANSFAC + 42498805 42498821 4.0E-06 CTGCATTAATCCCTTTC 17 V_OBOX3_01_M01466 TRANSFAC - 42498806 42498822 3.0E-06 TGAAAGGGATTAATGCA 17 V_SOX14_03_M02798 TRANSFAC + 42498892 42498907 3.0E-06 TAGTATTATAATCTGT 16 V_SOX14_03_M02798 TRANSFAC - 42498892 42498907 5.0E-06 ACAGATTATAATACTA 16 V_OTX3_01_M01403 TRANSFAC - 42498806 42498822 0.0E+00 TGAAAGGGATTAATGCA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.