Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TBC1D30 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23329 TBC1 domain family, member 30 chr12 + 65213351 - 65218851 65218351 Transcription Factor Binding Sites   Download all TFBS in the TBC1D30 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 65213939 65213951 5.0E-06 TTAAACAAAAAAA 13 SOX10_HMG_full_dimeric_15_3 SELEX + 65220028 65220042 3.0E-06 ATCAATTTCAGTTAA 15 EBF1_EBF_full_dimeric_14_1 SELEX + 65214001 65214014 8.0E-06 AGCCCCTTGGGACA 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 65213938 65213950 9.0E-06 GTTAAACAAAAAA 13 SOX9_HMG_full_dimeric_17_3 SELEX + 65220027 65220043 4.0E-06 AATCAATTTCAGTTAAA 17 SOX8_HMG_full_dimeric_17_1 SELEX + 65220027 65220043 0.0E+00 AATCAATTTCAGTTAAA 17 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 65213919 65213930 8.0E-06 TCTTAAAATAAA 12 SPIB_ETS_DBD_monomeric_14_1 SELEX - 65213985 65213998 8.0E-06 CAGAAGGGGAAGTG 14 RUNX3_RUNX_full_monomeric_10_1 SELEX - 65220076 65220085 7.0E-06 AAACCACAAC 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 65220077 65220085 8.0E-06 AAACCACAA 9 ESR1_MA0112.2 JASPAR - 65218667 65218686 8.0E-06 AGACCCGGTCAGCTTGTCCT 20 SOX14_HMG_DBD_dimeric_13_1 SELEX + 65220029 65220041 6.0E-06 TCAATTTCAGTTA 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 65213939 65213949 6.0E-06 TTAAACAAAAA 11 PBX1_MA0070.1 JASPAR + 65220247 65220258 7.0E-06 TTATCAAGCAAA 12 FEV_MA0156.1 JASPAR - 65220232 65220239 1.0E-05 CAGGAAAT 8 PPARG_MA0066.1 JASPAR - 65218494 65218513 4.0E-06 GAGGGTCACGGGGACTTACG 20 CPEB1_RRM_full_monomeric_8_1 SELEX - 65213917 65213924 4.0E-06 AATAAAAA 8 CPEB1_RRM_full_monomeric_8_1 SELEX - 65214018 65214025 4.0E-06 AATAAAAA 8 SPI1_ETS_full_monomeric_14_1 SELEX - 65213985 65213998 1.0E-05 CAGAAGGGGAAGTG 14 RUNX1_MA0002.2 JASPAR + 65220075 65220085 8.0E-06 AGTTGTGGTTT 11 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 65213939 65213951 1.0E-06 TTAAACAAAAAAA 13 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 65213939 65213952 2.0E-06 TTAAACAAAAAAAA 14 V_ELF5_02_M01980 TRANSFAC - 65220231 65220240 7.0E-06 CCAGGAAATT 10 V_SPI1_01_M01203 TRANSFAC - 65213982 65213998 7.0E-06 CAGAAGGGGAAGTGGGT 17 V_XVENT1_01_M00445 TRANSFAC - 65213946 65213958 8.0E-06 CTGCTATTTTTTT 13 V_TCF3_01_M01594 TRANSFAC + 65220241 65220253 9.0E-06 TCTTTGTTATCAA 13 V_AML_Q6_M00769 TRANSFAC + 65220073 65220087 1.0E-05 ATAGTTGTGGTTTTG 15 V_ESR1_01_M02261 TRANSFAC - 65218667 65218686 8.0E-06 AGACCCGGTCAGCTTGTCCT 20 V_ZEC_01_M01081 TRANSFAC - 65220304 65220316 3.0E-06 CAAGTGAGGTTGC 13 V_AML3_Q6_M01856 TRANSFAC - 65220077 65220084 1.0E-05 AACCACAA 8 V_HOXA13_02_M01297 TRANSFAC - 65213917 65213925 4.0E-06 AAATAAAAA 9 V_MEF2_02_M00231 TRANSFAC - 65213915 65213936 5.0E-06 GTAAAGTCTTAAAATAAAAAGG 22 V_SRY_02_M00160 TRANSFAC + 65213939 65213950 1.0E-06 TTAAACAAAAAA 12 V_FOXO3A_Q1_M01137 TRANSFAC - 65220311 65220322 3.0E-06 TGAAAACAAGTG 12 V_PU1_Q4_M01172 TRANSFAC + 65213979 65213997 1.0E-06 CAGACCCACTTCCCCTTCT 19 V_TCFAP2E_04_M02926 TRANSFAC + 65213939 65213952 9.0E-06 TTAAACAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 65213940 65213953 2.0E-06 TAAACAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC + 65213941 65213954 3.0E-06 AAACAAAAAAAATA 14 V_MEF2A_Q6_M02024 TRANSFAC + 65213921 65213930 1.0E-06 TATTTTAAGA 10 V_ELF4_04_M02850 TRANSFAC + 65213937 65213953 5.0E-06 TGTTAAACAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 65213938 65213954 1.0E-06 GTTAAACAAAAAAAATA 17 V_SOX7_03_M02807 TRANSFAC + 65213935 65213956 3.0E-06 ACTGTTAAACAAAAAAAATAGC 22 V_ETV7_01_M02071 TRANSFAC + 65220150 65220159 7.0E-06 CCCGGAAAAG 10 V_SPI1_03_M02078 TRANSFAC - 65213985 65213994 1.0E-05 AGGGGAAGTG 10 V_ZFP105_03_M02827 TRANSFAC - 65213914 65213928 4.0E-06 TTAAAATAAAAAGGG 15 V_ZFP105_03_M02827 TRANSFAC + 65213938 65213952 1.0E-06 GTTAAACAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 65213941 65213955 4.0E-06 AAACAAAAAAAATAG 15 V_RUNX1_01_M02257 TRANSFAC + 65220075 65220085 8.0E-06 AGTTGTGGTTT 11 V_POLY_C_M00212 TRANSFAC + 65220037 65220054 1.0E-05 AGTTAAATCCTCTTGCTC 18 V_AML2_01_M01759 TRANSFAC - 65220077 65220084 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 65218337 65218350 4.0E-06 CCCGCCCCCAATCC 14 V_RSRFC4_Q2_M00407 TRANSFAC - 65213916 65213932 9.0E-06 AGTCTTAAAATAAAAAG 17 V_HNF3_Q6_M00791 TRANSFAC + 65213939 65213951 6.0E-06 TTAAACAAAAAAA 13 V_HNF1_Q6_01_M01011 TRANSFAC + 65213934 65213954 9.0E-06 TACTGTTAAACAAAAAAAATA 21 V_MEF2_03_M00232 TRANSFAC - 65213915 65213936 2.0E-06 GTAAAGTCTTAAAATAAAAAGG 22 V_MEF2_04_M00233 TRANSFAC - 65213915 65213936 4.0E-06 GTAAAGTCTTAAAATAAAAAGG 22 V_MEF2_Q6_01_M00941 TRANSFAC + 65213918 65213929 1.0E-05 TTTTATTTTAAG 12 V_OCT4_02_M01124 TRANSFAC + 65213872 65213886 3.0E-06 TTTCTCTTGGTAATT 15 V_SOX11_03_M02795 TRANSFAC + 65213937 65213953 2.0E-06 TGTTAAACAAAAAAAAT 17 V_SOX11_03_M02795 TRANSFAC - 65220237 65220253 8.0E-06 TTGATAACAAAGACCAG 17 V_AP1_Q2_01_M00924 TRANSFAC - 65220208 65220219 4.0E-06 TGACTTATTCTT 12 V_ELF1_Q6_M00746 TRANSFAC - 65213986 65213997 1.0E-05 AGAAGGGGAAGT 12 V_GFI1_Q6_M01067 TRANSFAC + 65213964 65213976 9.0E-06 GGAAATCACAGGT 13 V_SOX15_03_M02799 TRANSFAC + 65213937 65213953 2.0E-06 TGTTAAACAAAAAAAAT 17 V_MTF1_06_M02882 TRANSFAC + 65213941 65213954 2.0E-06 AAACAAAAAAAATA 14 V_AP4_01_M00005 TRANSFAC + 65220213 65220230 5.0E-06 TAAGTCAGCGCGGGACCG 18 V_FAC1_01_M00456 TRANSFAC + 65213941 65213954 1.0E-06 AAACAAAAAAAATA 14 V_FOXL1_02_M02857 TRANSFAC + 65213935 65213950 2.0E-06 ACTGTTAAACAAAAAA 16 V_STAT6_02_M00500 TRANSFAC - 65213963 65213970 1.0E-05 GATTTCCT 8 V_SRF_06_M02916 TRANSFAC - 65213913 65213929 6.0E-06 CTTAAAATAAAAAGGGC 17 V_SRF_06_M02916 TRANSFAC + 65213937 65213953 2.0E-06 TGTTAAACAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 65213938 65213954 0.0E+00 GTTAAACAAAAAAAATA 17 V_SRF_06_M02916 TRANSFAC + 65213939 65213955 4.0E-06 TTAAACAAAAAAAATAG 17 V_SOX12_03_M02796 TRANSFAC + 65220241 65220254 7.0E-06 TCTTTGTTATCAAG 14 V_GFI1_Q6_01_M02010 TRANSFAC - 65213965 65213974 1.0E-06 CTGTGATTTC 10 V_HOXD10_01_M01375 TRANSFAC - 65213918 65213934 8.0E-06 AAAGTCTTAAAATAAAA 17 V_FEV_01_M02269 TRANSFAC - 65220232 65220239 1.0E-05 CAGGAAAT 8 V_CEBPG_Q6_01_M01869 TRANSFAC + 65213959 65213970 1.0E-06 CATTAGGAAATC 12 V_PAX4_04_M00380 TRANSFAC + 65213946 65213975 7.0E-06 AAAAAAATAGCAGCATTAGGAAATCACAGG 30 V_NANOG_02_M01247 TRANSFAC + 65213935 65213954 8.0E-06 ACTGTTAAACAAAAAAAATA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.