Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TMEM194A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23306 transmembrane protein 194A chr12 - 57472074 - 57477574 57472574 Transcription Factor Binding Sites   Download all TFBS in the TMEM194A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 57473087 57473104 2.0E-06 TGTGTCAATATTTTATAA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 57473087 57473104 1.0E-06 TTATAAAATATTGACACA 18 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 57472940 57472948 6.0E-06 GTGATAAAA 9 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 57473101 57473113 3.0E-06 ATAAGCATAAACA 13 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX - 57471891 57471901 6.0E-06 TCTTGTAAAAC 11 SPIC_ETS_full_monomeric_14_1 SELEX - 57472916 57472929 9.0E-06 AGAAAACGGAAGGA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 57473054 57473070 8.0E-06 CTATTTTAAATCCTTTA 17 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 57474869 57474885 8.0E-06 GAGTTAAAATGCCATTT 17 FOXF2_MA0030.1 JASPAR + 57473102 57473115 1.0E-06 TAAGCATAAACATT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX - 57472807 57472819 2.0E-06 TGTAAATAAACTG 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 57472710 57472721 8.0E-06 GCTTTTCCCGCC 12 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 57473087 57473097 6.0E-06 TGTGTCAATAT 11 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX - 57471891 57471901 5.0E-06 TCTTGTAAAAC 11 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX - 57473096 57473106 6.0E-06 GCTTATAAAAT 11 SOX8_HMG_full_dimeric_17_1 SELEX + 57474825 57474841 5.0E-06 CATCAATCATGTTGATA 17 NFYA_MA0060.1 JASPAR + 57472625 57472640 1.0E-06 ATCAACCAATGGGATG 16 IRF7_IRF_DBD_trimeric_17_1 SELEX + 57472847 57472863 1.0E-06 CAATAGAAAATCGGAAT 17 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 57473089 57473102 6.0E-06 ATAAAATATTGACA 14 Pax4_MA0068.1 JASPAR - 57473165 57473194 8.0E-06 GAATAAATGAATCTTTCTTAATCCTAACAT 30 POU4F3_POU_DBD_monomeric_16_1 SELEX + 57473090 57473105 5.0E-06 GTCAATATTTTATAAG 16 RUNX3_RUNX_full_monomeric_10_1 SELEX - 57474884 57474893 1.0E-05 AAACCACAGA 10 RFX2_RFX_DBD_dimeric_15_1 SELEX - 57472685 57472699 9.0E-06 AGTTGCTAAGGGGCG 15 POU3F3_POU_DBD_monomeric_13_1 SELEX - 57473099 57473111 4.0E-06 TTTATGCTTATAA 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 57473089 57473102 5.0E-06 ATAAAATATTGACA 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 57472808 57472818 6.0E-06 GTAAATAAACT 11 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 57473089 57473103 6.0E-06 TATAAAATATTGACA 15 OTX2_homeodomain_DBD_monomeric_8_1 SELEX - 57473170 57473177 7.0E-06 TTAATCCT 8 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 57473089 57473102 6.0E-06 TGTCAATATTTTAT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 57473089 57473102 4.0E-06 ATAAAATATTGACA 14 Lhx3_MA0135.1 JASPAR - 57473156 57473168 4.0E-06 ACATTAATTTTAC 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 57472808 57472818 2.0E-06 GTAAATAAACT 11 PBX1_MA0070.1 JASPAR + 57474824 57474835 5.0E-06 GCATCAATCATG 12 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 57474935 57474951 9.0E-06 ACATTAGACAAATTCCA 17 POU3F1_POU_DBD_monomeric_12_1 SELEX - 57473099 57473110 5.0E-06 TTATGCTTATAA 12 PITX1_homeodomain_full_monomeric_9_1 SELEX - 57473170 57473178 9.0E-06 CTTAATCCT 9 IRF9_IRF_full_trimeric_15_1 SELEX - 57475051 57475065 9.0E-06 AACAAGAGTGAAACT 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 57473089 57473102 7.0E-06 TGTCAATATTTTAT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 57473089 57473102 5.0E-06 ATAAAATATTGACA 14 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 57471891 57471901 2.0E-06 TCTTGTAAAAC 11 TEAD1_TEA_full_dimeric_17_1 SELEX + 57474935 57474951 7.0E-06 ACATTAGACAAATTCCA 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 57473096 57473105 1.0E-05 CTTATAAAAT 10 RUNX1_MA0002.2 JASPAR + 57474883 57474893 1.0E-06 CTCTGTGGTTT 11 FOXB1_forkhead_full_monomeric_9_1 SELEX - 57472811 57472819 4.0E-06 TGTAAATAA 9 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 57473089 57473103 9.0E-06 TATAAAATATTGACA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 57471993 57472005 8.0E-06 AAATCAGCAAACA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 57472808 57472820 6.0E-06 TTGTAAATAAACT 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 57473101 57473113 1.0E-06 ATAAGCATAAACA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 57473087 57473097 2.0E-06 TGTGTCAATAT 11 POU4F1_POU_DBD_monomeric_14_1 SELEX + 57473090 57473103 9.0E-06 GTCAATATTTTATA 14 HNF1A_MA0046.1 JASPAR + 57472933 57472946 1.0E-06 GGTTACTTTTTATC 14 V_FOXP1_01_M00987 TRANSFAC - 57473064 57473083 1.0E-06 TTTTTTGTGACTTCTATTTT 20 V_AP2ALPHA_Q6_M01857 TRANSFAC - 57471867 57471877 6.0E-06 CGCCCCCGGCC 11 V_FREAC7_01_M00293 TRANSFAC + 57473102 57473117 1.0E-06 TAAGCATAAACATTAG 16 V_AML_Q6_M00769 TRANSFAC + 57474881 57474895 1.0E-06 AACTCTGTGGTTTTC 15 V_SRY_07_M02813 TRANSFAC - 57473212 57473227 7.0E-06 GAGAATTATATTTGTC 16 V_FOXA2_04_M02749 TRANSFAC - 57472807 57472823 2.0E-06 CAGTTGTAAATAAACTG 17 V_DMRT3_01_M01148 TRANSFAC + 57474833 57474847 2.0E-06 ATGTTGATACTATGT 15 V_MYB_03_M02883 TRANSFAC + 57472485 57472500 2.0E-06 GGACCAACTGCCGGCG 16 V_HMGIY_Q3_M01010 TRANSFAC - 57474939 57474953 3.0E-06 ATTGGAATTTGTCTA 15 V_MAFB_03_M02879 TRANSFAC - 57473144 57473158 6.0E-06 TACTTCCAAAAATAA 15 V_MEF2_02_M00231 TRANSFAC + 57472340 57472361 2.0E-06 CCCTTTTCCAAAAATAACCCCC 22 V_MEF2_02_M00231 TRANSFAC + 57473054 57473075 3.0E-06 TAAAGGATTTAAAATAGAAGTC 22 V_MEF2_02_M00231 TRANSFAC - 57473139 57473160 3.0E-06 TTTACTTCCAAAAATAAAAATC 22 V_ISL2_01_M01328 TRANSFAC + 57473179 57473194 7.0E-06 AAAGATTCATTTATTC 16 V_POU2F3_01_M01476 TRANSFAC - 57473097 57473112 3.0E-06 GTTTATGCTTATAAAA 16 V_FOXO3A_Q1_M01137 TRANSFAC - 57472808 57472819 3.0E-06 TGTAAATAAACT 12 V_RFX4_03_M02789 TRANSFAC + 57472687 57472701 3.0E-06 CCCCTTAGCAACTGA 15 V_STAT6_01_M00494 TRANSFAC + 57472891 57472898 7.0E-06 TATTTCCA 8 V_AREB6_04_M00415 TRANSFAC - 57470667 57470675 8.0E-06 CTGTTTCAA 9 V_PRX2_Q2_M02115 TRANSFAC + 57473157 57473165 5.0E-06 TAAAATTAA 9 V_AIRE_02_M01000 TRANSFAC - 57472834 57472858 1.0E-06 GATTTTCTATTGGTTAAACTTACCA 25 V_HOXD13_01_M01404 TRANSFAC - 57473093 57473108 3.0E-06 ATGCTTATAAAATATT 16 V_NFY_Q6_01_M00775 TRANSFAC + 57472624 57472636 6.0E-06 TATCAACCAATGG 13 V_NFAT2_01_M01748 TRANSFAC - 57472891 57472899 6.0E-06 ATGGAAATA 9 V_MYBL1_04_M02884 TRANSFAC + 57472485 57472499 4.0E-06 GGACCAACTGCCGGC 15 V_HOXA13_03_M01430 TRANSFAC - 57473094 57473109 4.0E-06 TATGCTTATAAAATAT 16 V_HOXC13_01_M01317 TRANSFAC - 57473094 57473109 1.0E-06 TATGCTTATAAAATAT 16 V_CEBPB_01_M00109 TRANSFAC + 57473171 57473184 4.0E-06 GGATTAAGAAAGAT 14 V_MEF2A_Q6_M02024 TRANSFAC - 57473060 57473069 7.0E-06 TATTTTAAAT 10 V_TCFAP2C_04_M02925 TRANSFAC + 57472162 57472175 5.0E-06 CCGCCAAAAGGCTT 14 V_ELF4_04_M02850 TRANSFAC + 57472344 57472360 3.0E-06 TTTCCAAAAATAACCCC 17 V_ELF4_04_M02850 TRANSFAC - 57473140 57473156 1.0E-06 CTTCCAAAAATAAAAAT 17 V_TST1_01_M00133 TRANSFAC + 57473056 57473070 0.0E+00 AAGGATTTAAAATAG 15 V_HELIOSA_02_M01004 TRANSFAC + 57472733 57472743 7.0E-06 TATTGGAAAAT 11 V_HOXB13_01_M01467 TRANSFAC - 57473093 57473108 6.0E-06 ATGCTTATAAAATATT 16 V_ZFP410_03_M02832 TRANSFAC + 57472629 57472645 8.0E-06 ACCAATGGGATGGGCAG 17 V_CART1_01_M00416 TRANSFAC + 57473186 57473203 1.0E-05 CATTTATTCCTCTTATCA 18 V_RUNX1_01_M02257 TRANSFAC + 57474883 57474893 1.0E-06 CTCTGTGGTTT 11 V_ARID5A_03_M02736 TRANSFAC - 57473087 57473100 9.0E-06 AAAATATTGACACA 14 V_NFAT_Q6_M00302 TRANSFAC + 57472733 57472744 1.0E-06 TATTGGAAAATG 12 V_XFD3_01_M00269 TRANSFAC + 57473087 57473100 3.0E-06 TGTGTCAATATTTT 14 V_E12_Q6_M00693 TRANSFAC - 57472363 57472373 3.0E-06 GGCAGGTGCCG 11 V_IRF2_01_M00063 TRANSFAC - 57475051 57475063 7.0E-06 CAAGAGTGAAACT 13 V_AMEF2_Q6_M00403 TRANSFAC - 57473006 57473023 3.0E-06 GACTTTAAAAATCGTCCT 18 V_SP1_Q6_M00196 TRANSFAC - 57472680 57472692 9.0E-06 AAGGGGCGGGACT 13 V_LEF1_03_M02878 TRANSFAC + 57474822 57474837 0.0E+00 CAGCATCAATCATGTT 16 V_HNF1_Q6_01_M01011 TRANSFAC - 57472805 57472825 6.0E-06 ACCAGTTGTAAATAAACTGAA 21 V_HNF1_Q6_01_M01011 TRANSFAC - 57472930 57472950 3.0E-06 TCGTGATAAAAAGTAACCGAA 21 V_HNF1_Q6_01_M01011 TRANSFAC + 57473096 57473116 6.0E-06 ATTTTATAAGCATAAACATTA 21 V_NKX25_Q5_M01043 TRANSFAC + 57473851 57473860 6.0E-06 TCCCACTTCA 10 V_MEF2_03_M00232 TRANSFAC + 57473054 57473075 5.0E-06 TAAAGGATTTAAAATAGAAGTC 22 V_TATA_C_M00216 TRANSFAC - 57473013 57473022 6.0E-06 ACTTTAAAAA 10 V_RFXDC2_03_M02790 TRANSFAC + 57472687 57472701 1.0E-05 CCCCTTAGCAACTGA 15 V_ASCL2_03_M02737 TRANSFAC - 57472375 57472391 8.0E-06 GGCAGCAGCTGCCAAGG 17 V_ASCL2_03_M02737 TRANSFAC + 57472376 57472392 6.0E-06 CTTGGCAGCTGCTGCCC 17 V_PBX1_01_M00096 TRANSFAC + 57474826 57474834 4.0E-06 ATCAATCAT 9 V_OCT1_04_M00138 TRANSFAC - 57473094 57473116 0.0E+00 TAATGTTTATGCTTATAAAATAT 23 V_OCT1_04_M00138 TRANSFAC - 57473100 57473122 1.0E-05 AAAAGCTAATGTTTATGCTTATA 23 V_MEF2_04_M00233 TRANSFAC + 57472340 57472361 2.0E-06 CCCTTTTCCAAAAATAACCCCC 22 V_MEF2_04_M00233 TRANSFAC - 57473139 57473160 5.0E-06 TTTACTTCCAAAAATAAAAATC 22 V_MEF2_04_M00233 TRANSFAC - 57475030 57475051 7.0E-06 TCTGTCTCAAAAAACAAAAACA 22 V_PEBP_Q6_M00984 TRANSFAC - 57474881 57474895 1.0E-06 GAAAACCACAGAGTT 15 V_SPIB_01_M01204 TRANSFAC - 57472913 57472929 4.0E-06 AGAAAACGGAAGGAACT 17 V_BBX_04_M02843 TRANSFAC - 57472072 57472088 5.0E-06 TCTTGGTTAAAAGCGAG 17 V_MEF2_Q6_01_M00941 TRANSFAC - 57472347 57472358 4.0E-06 GGTTATTTTTGG 12 V_MEF2_Q6_01_M00941 TRANSFAC - 57473061 57473072 5.0E-06 TTCTATTTTAAA 12 V_CDC5_01_M00478 TRANSFAC + 57473059 57473070 1.0E-06 GATTTAAAATAG 12 V_BCL6B_04_M02844 TRANSFAC + 57472613 57472628 1.0E-05 AAACCCGCCCCTATCA 16 V_BCL6B_04_M02844 TRANSFAC + 57472680 57472695 5.0E-06 AGTCCCGCCCCTTAGC 16 V_FREAC2_01_M00290 TRANSFAC + 57473102 57473117 1.0E-06 TAAGCATAAACATTAG 16 V_ZFP105_04_M02931 TRANSFAC + 57473086 57473102 4.0E-06 GTGTGTCAATATTTTAT 17 V_GABPBETA_Q3_M01876 TRANSFAC - 57472149 57472159 5.0E-06 ACAGGAAGGGA 11 V_MYOD_Q6_01_M00929 TRANSFAC - 57472360 57472377 3.0E-06 AGGGGGCAGGTGCCGAGG 18 V_OCT2_01_M01368 TRANSFAC - 57473097 57473112 2.0E-06 GTTTATGCTTATAAAA 16 V_HNF1_01_M00132 TRANSFAC + 57472933 57472947 1.0E-06 GGTTACTTTTTATCA 15 V_ZBTB3_03_M02825 TRANSFAC + 57471915 57471931 1.0E-06 GAGATCACTGCATTTCT 17 V_FOXL1_04_M02753 TRANSFAC - 57472807 57472823 7.0E-06 CAGTTGTAAATAAACTG 17 V_LUN1_01_M00480 TRANSFAC + 57470631 57470647 3.0E-06 TCCCAGCTACTTGGGAG 17 V_LUN1_01_M00480 TRANSFAC - 57473863 57473879 3.0E-06 TCCCAGCTACTTGGGAG 17 V_TCF7L2_04_M02922 TRANSFAC + 57474822 57474837 1.0E-06 CAGCATCAATCATGTT 16 V_NFY_01_M00287 TRANSFAC + 57472625 57472640 1.0E-06 ATCAACCAATGGGATG 16 V_PBX1_02_M00124 TRANSFAC - 57472823 57472837 8.0E-06 ACCATCAATCACACC 15 V_PBX1_02_M00124 TRANSFAC + 57474823 57474837 3.0E-06 AGCATCAATCATGTT 15 V_PBX1_03_M01017 TRANSFAC - 57472825 57472836 3.0E-06 CCATCAATCACA 12 V_PBX1_03_M01017 TRANSFAC + 57474824 57474835 2.0E-06 GCATCAATCATG 12 V_NFAT2_02_M01749 TRANSFAC - 57472893 57472903 1.0E-06 TTCTATGGAAA 11 V_PBX_Q3_M00998 TRANSFAC + 57472828 57472839 1.0E-06 GATTGATGGTAA 12 V_PUR1_Q4_M01721 TRANSFAC - 57472445 57472453 6.0E-06 GGGACAGTG 9 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 57474886 57474893 1.0E-05 TGTGGTTT 8 V_YY1_01_M00059 TRANSFAC + 57473224 57473240 1.0E-06 TCTCTCCATTTAAGAAG 17 V_IRF1_01_M00062 TRANSFAC - 57475051 57475063 9.0E-06 CAAGAGTGAAACT 13 V_RFX3_04_M02788 TRANSFAC + 57472683 57472705 5.0E-06 CCCGCCCCTTAGCAACTGAAGAG 23 V_PIT1_Q6_M00802 TRANSFAC - 57473057 57473074 1.0E-05 ACTTCTATTTTAAATCCT 18 V_MEF2_01_M00006 TRANSFAC + 57472345 57472360 0.0E+00 TTCCAAAAATAACCCC 16 V_GATA5_03_M02756 TRANSFAC - 57473192 57473208 3.0E-06 CAAGATGATAAGAGGAA 17 V_HMEF2_Q6_M00406 TRANSFAC + 57472345 57472360 0.0E+00 TTCCAAAAATAACCCC 16 V_HOXA10_01_M01464 TRANSFAC + 57473150 57473165 5.0E-06 TTGGAAGTAAAATTAA 16 V_CMAF_01_M01070 TRANSFAC + 57471992 57472010 9.0E-06 GTGTTTGCTGATTTGCCGA 19 V_ZFP128_04_M02932 TRANSFAC - 57473098 57473111 4.0E-06 TTTATGCTTATAAA 14 V_P300_01_M00033 TRANSFAC - 57474792 57474805 2.0E-06 TGAGGGAGTGTGTG 14 V_HNF1A_01_M02162 TRANSFAC + 57472933 57472946 1.0E-06 GGTTACTTTTTATC 14 V_PBX1_Q3_M02028 TRANSFAC - 57472826 57472834 8.0E-06 ATCAATCAC 9 V_PBX1_Q3_M02028 TRANSFAC + 57474826 57474834 9.0E-06 ATCAATCAT 9 V_DMRT1_01_M01146 TRANSFAC + 57472932 57472946 7.0E-06 CGGTTACTTTTTATC 15 V_FOXK1_03_M02752 TRANSFAC - 57472807 57472823 3.0E-06 CAGTTGTAAATAAACTG 17 V_DMRT5_01_M01150 TRANSFAC + 57472930 57472944 1.0E-05 TTCGGTTACTTTTTA 15 V_DMRT5_01_M01150 TRANSFAC + 57474834 57474848 4.0E-06 TGTTGATACTATGTA 15 V_SOX14_03_M02798 TRANSFAC + 57473212 57473227 5.0E-06 GACAAATATAATTCTC 16 V_SOX14_03_M02798 TRANSFAC - 57473212 57473227 4.0E-06 GAGAATTATATTTGTC 16 V_OTX3_01_M01403 TRANSFAC + 57473165 57473181 1.0E-06 ATGTTAGGATTAAGAAA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.