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MCF2L Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23263 MCF.2 cell line derived transforming sequence-like chr13 + 113618534 - 113624034 113623534 Transcription Factor Binding Sites   Download all TFBS in the MCF2L promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 113625093 113625108 3.0E-06 GCGCATTTTTAATTGG 16 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 113619421 113619430 4.0E-06 GCCATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 113619421 113619430 4.0E-06 GCCATAAAAA 10 NFIA_NFI_full_dimeric_15_1 SELEX + 113622762 113622776 8.0E-06 GTGGCTTGGTGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 113622762 113622776 9.0E-06 TTGGCACCAAGCCAC 15 NFIA_NFI_full_dimeric_15_1 SELEX - 113627439 113627453 5.0E-06 GTGGCATTTTGCCAG 15 ALX3_homeodomain_full_monomeric_10_1 SELEX - 113625100 113625109 2.0E-06 TCCAATTAAA 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX - 113625100 113625109 5.0E-06 TCCAATTAAA 10 NFIX_NFI_full_dimeric_15_2 SELEX + 113622762 113622776 9.0E-06 GTGGCTTGGTGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 113622762 113622776 8.0E-06 TTGGCACCAAGCCAC 15 NFIX_NFI_full_dimeric_15_2 SELEX + 113627439 113627453 1.0E-06 CTGGCAAAATGCCAC 15 NFIX_NFI_full_dimeric_15_2 SELEX - 113627439 113627453 5.0E-06 GTGGCATTTTGCCAG 15 MSX1_homeodomain_full_monomeric_8_1 SELEX - 113625101 113625108 7.0E-06 CCAATTAA 8 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 113623266 113623284 1.0E-06 CACCTGTGTCACTAGGTCA 19 MSX2_homeodomain_DBD_monomeric_8_1 SELEX - 113625101 113625108 7.0E-06 CCAATTAA 8 RUNX3_RUNX_full_monomeric_10_1 SELEX + 113622613 113622622 1.0E-06 AAACCACAAA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 113619420 113619429 6.0E-06 AGCCATAAAA 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 113622613 113622621 8.0E-06 AAACCACAA 9 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 113625099 113625109 5.0E-06 TCCAATTAAAA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 113619421 113619430 8.0E-06 GCCATAAAAA 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 113625099 113625108 7.0E-06 CCAATTAAAA 10 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX - 113623830 113623841 4.0E-06 TTTCCCCACATT 12 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 113619420 113619430 0.0E+00 AGCCATAAAAA 11 SP1_MA0079.2 JASPAR + 113623486 113623495 7.0E-06 CCCCGCCCCC 10 ZIC3_C2H2_full_monomeric_15_1 SELEX + 113623489 113623503 4.0E-06 CGCCCCCCGCGGCGC 15 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 113625100 113625109 1.0E-05 TCCAATTAAA 10 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 113623265 113623280 8.0E-06 TGTGTCACTAGGTCAC 16 BSX_homeodomain_DBD_monomeric_8_1 SELEX - 113625101 113625108 7.0E-06 CCAATTAA 8 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 113625100 113625109 4.0E-06 TCCAATTAAA 10 Msx3_homeodomain_DBD_monomeric_8_1 SELEX - 113625101 113625108 7.0E-06 CCAATTAA 8 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 113619421 113619429 4.0E-06 GCCATAAAA 9 MTF1_C2H2_DBD_monomeric_14_1 SELEX - 113622746 113622759 2.0E-06 TGTGCACTCGACAC 14 NFIB_NFI_full_dimeric_15_1 SELEX - 113622762 113622776 9.0E-06 TTGGCACCAAGCCAC 15 NFIB_NFI_full_dimeric_15_1 SELEX - 113627439 113627453 7.0E-06 GTGGCATTTTGCCAG 15 Tp53_p53l_DBD_dimeric_17_1 SELEX + 113622317 113622333 2.0E-06 ACATGTTATTGGCATGA 17 Tp53_p53l_DBD_dimeric_17_1 SELEX - 113622317 113622333 1.0E-06 TCATGCCAATAACATGT 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 113625099 113625108 8.0E-06 CCAATTAAAA 10 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 113623831 113623841 2.0E-06 TTTCCCCACAT 11 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 113625099 113625109 2.0E-06 TCCAATTAAAA 11 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 113625100 113625109 6.0E-06 TCCAATTAAA 10 RUNX1_MA0002.2 JASPAR - 113622613 113622623 1.0E-06 TTTTGTGGTTT 11 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX - 113623828 113623841 4.0E-06 TTTCCCCACATTTC 14 ETV6_ETS_full_dimeric_15_1 SELEX - 113623462 113623476 0.0E+00 GCGGAAGCGGAAGCG 15 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 113623830 113623841 1.0E-06 TTTCCCCACATT 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 113619420 113619430 3.0E-06 AGCCATAAAAA 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 113619421 113619429 8.0E-06 GCCATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 113619421 113619429 8.0E-06 GCCATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 113619420 113619430 3.0E-06 AGCCATAAAAA 11 RORA_2_MA0072.1 JASPAR - 113623265 113623278 7.0E-06 TGTCACTAGGTCAC 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 113625099 113625108 8.0E-06 CCAATTAAAA 10 ZIC1_C2H2_full_monomeric_14_1 SELEX + 113623489 113623502 9.0E-06 CGCCCCCCGCGGCG 14 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 113625099 113625109 5.0E-06 TCCAATTAAAA 11 V_HOXA9_01_M01351 TRANSFAC + 113619418 113619434 0.0E+00 AAAGCCATAAAAAAAGT 17 V_AP2ALPHA_Q6_M01857 TRANSFAC - 113623557 113623567 9.0E-06 AGCCTCCAGCC 11 V_FOXP3_Q4_M00992 TRANSFAC + 113623694 113623710 1.0E-05 ATGAGGTTTTGGCTGAG 17 V_CDX2_Q5_01_M01659 TRANSFAC + 113619421 113619431 5.0E-06 GCCATAAAAAA 11 V_APOLYA_B_M00310 TRANSFAC + 113623747 113623761 6.0E-06 ATTAAATGCGGTTTC 15 V_EBF_Q6_M00977 TRANSFAC - 113623180 113623190 4.0E-06 GTCCCCTGGGA 11 V_OBOX5_05_M03066 TRANSFAC + 113623740 113623756 4.0E-06 TGCAGAGATTAAATGCG 17 V_OSF2_Q6_M00731 TRANSFAC + 113622615 113622622 1.0E-05 ACCACAAA 8 V_NF1A_Q6_M02103 TRANSFAC + 113622762 113622777 9.0E-06 GTGGCTTGGTGCCAAC 16 V_NF1A_Q6_M02103 TRANSFAC - 113627438 113627453 8.0E-06 GTGGCATTTTGCCAGG 16 V_COE1_Q6_M01871 TRANSFAC + 113623180 113623193 6.0E-06 TCCCAGGGGACCTC 14 V_AML3_Q6_M01856 TRANSFAC + 113622614 113622621 1.0E-05 AACCACAA 8 V_STAT_Q6_M00777 TRANSFAC - 113625119 113625131 6.0E-06 TGCTCTTCTGAGA 13 V_ATF3_Q6_01_M01863 TRANSFAC - 113625031 113625041 7.0E-06 ATGACATCAGC 11 V_SP1_03_M02281 TRANSFAC + 113623486 113623495 7.0E-06 CCCCGCCCCC 10 V_AP2_Q6_M00189 TRANSFAC + 113623629 113623640 3.0E-06 CACCCGCAGGCG 12 V_SP1_02_M01303 TRANSFAC - 113623484 113623494 3.0E-06 GGGGCGGGGGG 11 V_HOXD13_01_M01404 TRANSFAC - 113625096 113625111 9.0E-06 TTTCCAATTAAAAATG 16 V_PAX7_01_M01339 TRANSFAC + 113625097 113625113 7.0E-06 ATTTTTAATTGGAAAAA 17 V_ETS_Q4_M00771 TRANSFAC - 113623652 113623663 1.0E-05 ATCCGCTTCCTC 12 V_ELF4_04_M02850 TRANSFAC - 113625095 113625111 1.0E-06 TTTCCAATTAAAAATGC 17 V_ZNF219_01_M01122 TRANSFAC + 113623482 113623493 5.0E-06 CGCCCCCCGCCC 12 V_ZNF219_01_M01122 TRANSFAC + 113623510 113623521 0.0E+00 CGCCCCCCTCCC 12 V_OBOX5_02_M01480 TRANSFAC + 113623740 113623756 4.0E-06 TGCAGAGATTAAATGCG 17 V_HELIOSA_02_M01004 TRANSFAC + 113625103 113625113 4.0E-06 AATTGGAAAAA 11 V_POU3F2_01_M00463 TRANSFAC - 113619424 113619437 6.0E-06 CTGACTTTTTTTAT 14 V_HOXB13_01_M01467 TRANSFAC + 113619418 113619433 5.0E-06 AAAGCCATAAAAAAAG 16 V_HOXB13_01_M01467 TRANSFAC - 113625096 113625111 3.0E-06 TTTCCAATTAAAAATG 16 V_RUNX1_01_M02257 TRANSFAC - 113622613 113622623 1.0E-06 TTTTGTGGTTT 11 V_NFAT_Q6_M00302 TRANSFAC + 113625103 113625114 2.0E-06 AATTGGAAAAAG 12 V_NKX61_01_M00424 TRANSFAC + 113625098 113625110 0.0E+00 TTTTTAATTGGAA 13 V_E12_Q6_M00693 TRANSFAC - 113627448 113627458 8.0E-06 AGCAGGTGGCA 11 V_AML2_01_M01759 TRANSFAC + 113622614 113622621 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC + 113623591 113623604 1.0E-05 CCCGCCTCCGCCGC 14 V_HOXB9_01_M01426 TRANSFAC + 113619418 113619433 0.0E+00 AAAGCCATAAAAAAAG 16 V_SP1_Q6_M00196 TRANSFAC - 113623484 113623496 6.0E-06 GGGGGGCGGGGGG 13 V_IK1_01_M00086 TRANSFAC - 113622365 113622377 9.0E-06 GTTTGGGAATTCA 13 V_CDX2_01_M01449 TRANSFAC + 113619417 113619432 1.0E-05 CAAAGCCATAAAAAAA 16 V_MAZ_Q6_01_M02023 TRANSFAC - 113623586 113623599 6.0E-06 GGAGGCGGGGAGGG 14 V_IRC900814_04_M02870 TRANSFAC - 113623199 113623214 5.0E-06 CTAGAAATTCGTGTCA 16 V_CDX2_Q5_M00729 TRANSFAC - 113619420 113619433 3.0E-06 CTTTTTTTATGGCT 14 V_HOXC11_01_M01329 TRANSFAC + 113619417 113619432 8.0E-06 CAAAGCCATAAAAAAA 16 V_BCL6_Q3_M01171 TRANSFAC + 113623207 113623216 5.0E-06 ATTTCTAGGT 10 V_CDX1_01_M01373 TRANSFAC + 113619417 113619432 8.0E-06 CAAAGCCATAAAAAAA 16 V_IK2_01_M00087 TRANSFAC - 113622366 113622377 1.0E-06 GTTTGGGAATTC 12 V_PEBP_Q6_M00984 TRANSFAC + 113622611 113622625 7.0E-06 CCAAACCACAAAAGG 15 V_HNF4A_02_M02868 TRANSFAC - 113622166 113622181 7.0E-06 TTCCAGAGTCCAACAG 16 V_HOXD9_Q2_M01834 TRANSFAC + 113619420 113619429 6.0E-06 AGCCATAAAA 10 V_SP4_Q5_M01273 TRANSFAC + 113623485 113623495 5.0E-06 CCCCCGCCCCC 11 V_OTX2_Q3_M01719 TRANSFAC + 113623741 113623753 1.0E-05 GCAGAGATTAAAT 13 V_FAC1_01_M00456 TRANSFAC - 113623676 113623689 9.0E-06 CGACACAACAAAAA 14 V_LUN1_01_M00480 TRANSFAC + 113625043 113625059 4.0E-06 CCCCAGGTTTTTAGGGA 17 V_PARP_Q3_M01211 TRANSFAC + 113625105 113625114 8.0E-06 TTGGAAAAAG 10 V_AIRE_01_M00999 TRANSFAC - 113622596 113622621 0.0E+00 TTGTGGTTTGGTATTATAGGTAACAT 26 V_ASCL2_04_M02841 TRANSFAC + 113619474 113619489 9.0E-06 CCCTCCCCTCCCTGTC 16 V_STAT1STAT1_Q3_M01212 TRANSFAC + 113623757 113623769 9.0E-06 GTTTCCAAGCACA 13 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 113622613 113622620 1.0E-05 TGTGGTTT 8 V_CTF1_01_M01196 TRANSFAC + 113622763 113622776 3.0E-06 TGGCTTGGTGCCAA 14 V_CTF1_01_M01196 TRANSFAC - 113627439 113627452 5.0E-06 TGGCATTTTGCCAG 14 V_SP1_Q2_01_M00933 TRANSFAC + 113623486 113623495 4.0E-06 CCCCGCCCCC 10 V_HOXD10_01_M01375 TRANSFAC + 113619418 113619434 9.0E-06 AAAGCCATAAAAAAAGT 17 V_OBOX5_01_M01381 TRANSFAC + 113623740 113623756 5.0E-06 TGCAGAGATTAAATGCG 17 V_TCF3_05_M02920 TRANSFAC + 113619420 113619434 7.0E-06 AGCCATAAAAAAAGT 15 TLX1_NFIC_MA0119.1 JASPAR + 113622763 113622776 3.0E-06 TGGCTTGGTGCCAA 14 TLX1_NFIC_MA0119.1 JASPAR - 113627439 113627452 5.0E-06 TGGCATTTTGCCAG 14 V_ARID5A_04_M02840 TRANSFAC + 113622602 113622618 7.0E-06 CCTATAATACCAAACCA 17 V_SEF1_C_M00214 TRANSFAC + 113622619 113622637 7.0E-06 CAAAAGGATAGCTGCGGTT 19 V_OBOX6_06_M03067 TRANSFAC - 113623740 113623756 5.0E-06 CGCATTTAATCTCTGCA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.