Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PDS5A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23244 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) chr4 - 39979076 - 39984576 39979576 Transcription Factor Binding Sites   Download all TFBS in the PDS5A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints E2F4_E2F_DBD_dimeric_12_2 SELEX + 39979638 39979649 4.0E-06 GTTGGCGCCAAT 12 E2F4_E2F_DBD_dimeric_12_2 SELEX - 39979638 39979649 7.0E-06 ATTGGCGCCAAC 12 Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX - 39979359 39979369 4.0E-06 CGGACACAAGC 11 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX + 39977514 39977524 3.0E-06 CCTCATAAAAA 11 En1_MA0027.1 JASPAR - 39977379 39977389 8.0E-06 AAGTAATATTC 11 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 39980790 39980798 2.0E-06 AAAAGTCAA 9 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX - 39979360 39979370 3.0E-06 ACGGACACAAG 11 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 39980647 39980658 1.0E-06 TTTTTTCCCACA 12 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 39978421 39978431 1.0E-05 AGCCCCAGGCT 11 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX + 39977514 39977524 3.0E-06 CCTCATAAAAA 11 SOX8_HMG_full_dimeric_17_1 SELEX + 39977411 39977427 5.0E-06 AATCTATGTCAGTGGAA 17 SOX7_HMG_full_dimeric_17_2 SELEX - 39977376 39977392 8.0E-06 AATAAGTAATATTCTTC 17 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 39980673 39980684 7.0E-06 CTTAAAAATAGT 12 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 39978421 39978431 9.0E-06 AGCCCCAGGCT 11 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 39980002 39980015 6.0E-06 AGTTAATATTTTGA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 39980002 39980015 3.0E-06 TCAAAATATTAACT 14 NR2F1_MA0017.1 JASPAR - 39978249 39978262 6.0E-06 TGAACTTTGGTTTT 14 ZNF524_C2H2_full_dimeric_12_1 SELEX + 39978733 39978744 9.0E-06 AGCCTCGGACCC 12 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX - 39979360 39979369 3.0E-06 CGGACACAAG 10 GBX2_homeodomain_full_monomeric_10_1 SELEX - 39979853 39979862 8.0E-06 AGCAATTAAC 10 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 39977515 39977524 5.0E-06 CTCATAAAAA 10 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 39979852 39979862 4.0E-06 AGCAATTAACT 11 Ar_MA0007.1 JASPAR - 39980626 39980647 1.0E-05 AATAGACCAATGGGTACCCATC 22 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 39980002 39980015 4.0E-06 AGTTAATATTTTGA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 39980002 39980015 6.0E-06 TCAAAATATTAACT 14 Sox17_HMG_DBD_dimeric_15_2 SELEX - 39977377 39977391 6.0E-06 ATAAGTAATATTCTT 15 MEF2A_MA0052.1 JASPAR - 39980674 39980683 3.0E-06 CTATTTTTAA 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 39977515 39977524 3.0E-06 CTCATAAAAA 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 39980002 39980015 3.0E-06 AGTTAATATTTTGA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 39980002 39980015 6.0E-06 TCAAAATATTAACT 14 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 39977515 39977524 5.0E-06 CTCATAAAAA 10 TBX15_TBX_DBD_dimeric_19_1 SELEX - 39977455 39977473 8.0E-06 AGGTTTTAAATTTCAACCT 19 Foxd3_MA0041.1 JASPAR - 39977440 39977451 3.0E-06 GTTTGTTAGTTT 12 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 39980002 39980015 5.0E-06 AGTTAATATTTTGA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 39980002 39980015 1.0E-05 TCAAAATATTAACT 14 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 39978421 39978431 8.0E-06 AGCCCCAGGCT 11 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX + 39977514 39977524 2.0E-06 CCTCATAAAAA 11 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 39977514 39977524 4.0E-06 CCTCATAAAAA 11 PPARG_MA0066.1 JASPAR - 39978212 39978231 8.0E-06 GTAGAGGACTGTGAACCAAA 20 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 39977515 39977524 8.0E-06 CTCATAAAAA 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 39977515 39977524 8.0E-06 CTCATAAAAA 10 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 39979852 39979862 5.0E-06 AGCAATTAACT 11 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 39977515 39977523 1.0E-05 CTCATAAAA 9 IRF3_IRF_full_trimeric_21_1 SELEX + 39977422 39977442 3.0E-06 GTGGAACAGAAACCAAAAAAA 21 ZNF524_C2H2_full_monomeric_14_1 SELEX + 39978988 39979001 8.0E-06 CTCGGACCCGCGGC 14 E2F1_E2F_DBD_dimeric_12_1 SELEX + 39979638 39979649 6.0E-06 GTTGGCGCCAAT 12 E2F1_E2F_DBD_dimeric_12_1 SELEX - 39979638 39979649 3.0E-06 ATTGGCGCCAAC 12 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 39978421 39978431 6.0E-06 AGCCCCAGGCT 11 E2F1_E2F_DBD_monomeric_14_1 SELEX + 39979637 39979650 3.0E-06 GGTTGGCGCCAATA 14 HNF1A_MA0046.1 JASPAR + 39980002 39980015 1.0E-06 AGTTAATATTTTGA 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 39977515 39977524 9.0E-06 CTCATAAAAA 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 39979852 39979862 2.0E-06 AGCAATTAACT 11 V_FOXP1_01_M00987 TRANSFAC - 39977427 39977446 4.0E-06 TTAGTTTTTTTGGTTTCTGT 20 V_FOXP1_01_M00987 TRANSFAC - 39977436 39977455 2.0E-06 TCATGTTTGTTAGTTTTTTT 20 V_CDP_03_M01342 TRANSFAC + 39978065 39978081 5.0E-06 GGCGTTTGATCATCTCG 17 V_CEBPG_Q6_M00622 TRANSFAC + 39978294 39978306 5.0E-06 TTCATTTCAAATC 13 V_HNF3B_01_M00131 TRANSFAC + 39977384 39977398 6.0E-06 TTACTTATTTGTTAA 15 V_MSX3_01_M01341 TRANSFAC - 39979851 39979866 8.0E-06 ACCGAGCAATTAACTA 16 V_E2F4_04_M02847 TRANSFAC + 39979636 39979652 5.0E-06 CGGTTGGCGCCAATACC 17 V_TBX15_01_M01263 TRANSFAC + 39977455 39977473 5.0E-06 AGGTTGAAATTTAAAACCT 19 V_CEBP_Q3_M00770 TRANSFAC - 39977307 39977318 3.0E-06 ATGTTTGGCAAT 12 V_ZFX_01_M01593 TRANSFAC - 39978946 39978961 2.0E-06 GGGAAGGCCTCGGCGG 16 V_ZFX_01_M01593 TRANSFAC - 39979377 39979392 8.0E-06 GGGCGGGCCGCGGGGG 16 V_EVI1_04_M00081 TRANSFAC - 39978293 39978307 4.0E-06 AGATTTGAAATGAAA 15 V_FOXD3_01_M00130 TRANSFAC - 39977440 39977451 4.0E-06 GTTTGTTAGTTT 12 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 39979798 39979809 6.0E-06 AAAAGTCACCAG 12 V_ETS_B_M00340 TRANSFAC - 39979875 39979888 7.0E-06 AGGAGGAAATCAGT 14 V_STAT_Q6_M00777 TRANSFAC - 39977371 39977383 8.0E-06 TATTCTTCTTGTA 13 V_IK_Q5_M01169 TRANSFAC + 39979842 39979851 8.0E-06 GTTGGGAGGT 10 V_AR_Q6_01_M01996 TRANSFAC + 39978869 39978883 7.0E-06 TCACATTTTGTTCCT 15 V_MEF2_02_M00231 TRANSFAC + 39980667 39980688 5.0E-06 CGTCAACTTAAAAATAGTAAAG 22 V_EVI1_02_M00079 TRANSFAC - 39978089 39978099 8.0E-06 CGACAAGATCA 11 V_CEBP_01_M00159 TRANSFAC + 39977389 39977401 5.0E-06 TATTTGTTAAGAT 13 V_CUX1_03_M02958 TRANSFAC + 39978065 39978081 5.0E-06 GGCGTTTGATCATCTCG 17 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 39978478 39978489 2.0E-06 GGAGTTTCCCAT 12 V_NERF_Q2_M00531 TRANSFAC + 39978838 39978855 0.0E+00 CGCCAGGAAGCGGCTGAC 18 V_HEN1_01_M00068 TRANSFAC + 39978897 39978918 2.0E-06 AGGGACCCCAGCTGCTTCTCTG 22 V_PRX2_Q2_M02115 TRANSFAC - 39977573 39977581 7.0E-06 TTAAAGTAA 9 V_ZFP281_05_M02935 TRANSFAC - 39979804 39979820 7.0E-06 GGATGACCCCCAAAAGT 17 V_GM497_04_M02864 TRANSFAC - 39979347 39979362 1.0E-05 AAGCGCACACACTCCC 16 V_TCFAP2E_04_M02926 TRANSFAC - 39978288 39978301 7.0E-06 GAAATGAAAAAAGA 14 V_HOXA13_03_M01430 TRANSFAC + 39977511 39977526 2.0E-06 ACACCTCATAAAAAGG 16 V_DLX5_01_M01388 TRANSFAC - 39979849 39979864 8.0E-06 CGAGCAATTAACTACC 16 V_HOXC13_01_M01317 TRANSFAC + 39977511 39977526 1.0E-06 ACACCTCATAAAAAGG 16 V_CEBPB_01_M00109 TRANSFAC + 39979915 39979928 2.0E-06 AAGTTGTGCAATGG 14 V_CEBPB_01_M00109 TRANSFAC + 39980007 39980020 0.0E+00 ATATTTTGAAAGCT 14 V_MEF2A_Q6_M02024 TRANSFAC - 39980673 39980682 9.0E-06 TATTTTTAAG 10 V_HMGA2_01_M01300 TRANSFAC - 39977520 39977534 9.0E-06 ATTATGGCCCTTTTT 15 V_ETS_Q4_M00771 TRANSFAC - 39978841 39978852 3.0E-06 AGCCGCTTCCTG 12 V_TRF1_01_M01237 TRANSFAC - 39977468 39977482 6.0E-06 CTAAGGTTAAGGTTT 15 V_HNF6_Q6_M00639 TRANSFAC + 39980790 39980801 9.0E-06 AAAAGTCAATGC 12 V_ELF4_04_M02850 TRANSFAC - 39980001 39980017 9.0E-06 TTTCAAAATATTAACTT 17 V_SOX13_03_M02797 TRANSFAC - 39980612 39980627 5.0E-06 TCAAGAATAATTTGAA 16 V_FOXA2_02_M02853 TRANSFAC + 39977439 39977453 0.0E+00 AAAACTAACAAACAT 15 V_ZFP105_03_M02827 TRANSFAC + 39977438 39977452 7.0E-06 AAAAACTAACAAACA 15 V_ZFP105_03_M02827 TRANSFAC + 39977493 39977507 4.0E-06 CTTAAACAAAATTAG 15 V_HNF3G_Q4_M02015 TRANSFAC - 39977445 39977452 7.0E-06 TGTTTGTT 8 V_ARID5A_03_M02736 TRANSFAC + 39980004 39980017 3.0E-06 TTAATATTTTGAAA 14 V_COUP_01_M00158 TRANSFAC - 39978249 39978262 6.0E-06 TGAACTTTGGTTTT 14 V_HNF1_Q6_M00790 TRANSFAC + 39980001 39980018 4.0E-06 AAGTTAATATTTTGAAAG 18 V_TEF_Q6_M00672 TRANSFAC + 39977490 39977501 4.0E-06 ATGCTTAAACAA 12 V_PAX9_B_M00329 TRANSFAC + 39979917 39979940 2.0E-06 GTTGTGCAATGGGGCGCAGCGTGA 24 V_CEBPD_Q6_M00621 TRANSFAC - 39979916 39979927 7.0E-06 CATTGCACAACT 12 V_OLF1_01_M00261 TRANSFAC + 39979335 39979356 5.0E-06 GAAGGCTCCTCCGGGAGTGTGT 22 V_CDX2_01_M01449 TRANSFAC + 39977523 39977538 8.0E-06 AAGGGCCATAATACTC 16 V_MAZ_Q6_01_M02023 TRANSFAC - 39979559 39979572 6.0E-06 GGCGGAGGAAGGGG 14 V_AP2BETA_Q3_M01858 TRANSFAC - 39978825 39978840 2.0E-06 GCGTGGGGCTGAGGGT 16 V_E2F2_04_M02846 TRANSFAC - 39979635 39979651 6.0E-06 GTATTGGCGCCAACCGG 17 V_E2F2_04_M02846 TRANSFAC + 39979636 39979652 4.0E-06 CGGTTGGCGCCAATACC 17 V_IRF_Q6_M00772 TRANSFAC - 39977424 39977438 3.0E-06 TTTGGTTTCTGTTCC 15 V_MEF2_03_M00232 TRANSFAC + 39980667 39980688 5.0E-06 CGTCAACTTAAAAATAGTAAAG 22 V_ISRE_01_M00258 TRANSFAC - 39977422 39977436 4.0E-06 TGGTTTCTGTTCCAC 15 V_ISRE_01_M00258 TRANSFAC + 39978479 39978493 2.0E-06 GAGTTTCCCATTCCG 15 V_SP1SP3_Q4_M01219 TRANSFAC + 39979001 39979011 2.0E-06 CCCCCCCCTCC 11 V_HMX1_02_M01481 TRANSFAC - 39979849 39979865 3.0E-06 CCGAGCAATTAACTACC 17 V_ZBRK1_01_M01105 TRANSFAC + 39979762 39979776 5.0E-06 GGCAAACAGTGCTTT 15 V_NKX3A_01_M00451 TRANSFAC - 39977382 39977393 3.0E-06 AAATAAGTAATA 12 V_HNF4_DR1_Q3_M00764 TRANSFAC - 39978250 39978262 8.0E-06 TGAACTTTGGTTT 13 V_ARID3A_04_M02735 TRANSFAC + 39977490 39977506 1.0E-05 ATGCTTAAACAAAATTA 17 V_STAT3_03_M01595 TRANSFAC + 39978701 39978716 6.0E-06 GCTGCCGGGAACAAAA 16 V_OCT4_02_M01124 TRANSFAC - 39978290 39978304 8.0E-06 TTTGAAATGAAAAAA 15 V_ICSBP_Q6_M00699 TRANSFAC + 39977425 39977436 7.0E-06 GAACAGAAACCA 12 V_FOXO1_Q5_M01216 TRANSFAC - 39980711 39980719 8.0E-06 AAAAACAAG 9 V_HNF1_01_M00132 TRANSFAC + 39980002 39980016 1.0E-06 AGTTAATATTTTGAA 15 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 39979980 39979988 8.0E-06 GAGGGTGGG 9 V_BARHL1_01_M01332 TRANSFAC - 39979851 39979866 7.0E-06 ACCGAGCAATTAACTA 16 V_FOXL1_02_M02857 TRANSFAC + 39977490 39977505 5.0E-06 ATGCTTAAACAAAATT 16 V_HEN1_02_M00058 TRANSFAC + 39978897 39978918 2.0E-06 AGGGACCCCAGCTGCTTCTCTG 22 V_HEN1_02_M00058 TRANSFAC - 39978897 39978918 4.0E-06 CAGAGAAGCAGCTGGGGTCCCT 22 V_HDX_01_M01333 TRANSFAC - 39979872 39979888 6.0E-06 AGGAGGAAATCAGTTCA 17 V_HNF4_Q6_01_M01031 TRANSFAC + 39978250 39978263 8.0E-06 AAACCAAAGTTCAG 14 V_DMRT7_01_M01151 TRANSFAC - 39977436 39977449 4.0E-06 TTGTTAGTTTTTTT 14 V_BDP1_01_M01796 TRANSFAC + 39978382 39978393 4.0E-06 GGGATCGAACCC 12 V_FOXO3_01_M00477 TRANSFAC + 39977389 39977402 8.0E-06 TATTTGTTAAGATT 14 V_STAT6_02_M00500 TRANSFAC + 39979878 39979885 1.0E-05 GATTTCCT 8 V_TBX22_01_M01195 TRANSFAC + 39978270 39978288 2.0E-06 AGGGGCGACTTTGTAACCT 19 V_TCFAP2A_03_M02819 TRANSFAC - 39978614 39978628 4.0E-06 TTTCCCGGAGGGGAC 15 V_SRF_06_M02916 TRANSFAC - 39980641 39980657 8.0E-06 GTGGGAAAAAAATAGAC 17 V_HNF1A_Q5_M02013 TRANSFAC + 39980002 39980012 0.0E+00 AGTTAATATTT 11 V_FOXO1_04_M01969 TRANSFAC + 39977443 39977462 9.0E-06 CTAACAAACATGAGGTTGAA 20 V_FOXO1_01_M00473 TRANSFAC - 39980711 39980720 9.0E-06 CAAAAACAAG 10 V_BARHL2_01_M01446 TRANSFAC - 39979851 39979866 2.0E-06 ACCGAGCAATTAACTA 16 V_FOXO4_01_M00472 TRANSFAC - 39980709 39980719 4.0E-06 AAAAACAAGTC 11 V_CEBP_Q2_01_M00912 TRANSFAC - 39979915 39979926 1.0E-06 ATTGCACAACTT 12 V_HMX3_02_M01413 TRANSFAC - 39979849 39979865 8.0E-06 CCGAGCAATTAACTACC 17 V_P300_01_M00033 TRANSFAC + 39979344 39979357 2.0E-06 TCCGGGAGTGTGTG 14 V_EHF_07_M02849 TRANSFAC + 39979990 39980005 8.0E-06 TTAGATTTCTGAAGTT 16 V_TCF11MAFG_01_M00284 TRANSFAC - 39979895 39979916 7.0E-06 TTTCCTTGACTTTGCAGATCTC 22 V_HNF1A_01_M02162 TRANSFAC + 39980002 39980015 1.0E-06 AGTTAATATTTTGA 14 V_PBX1_04_M01357 TRANSFAC - 39980618 39980634 6.0E-06 GTACCCATCAAGAATAA 17 V_BRF1_01_M01747 TRANSFAC - 39978381 39978393 2.0E-06 GGGTTCGATCCCT 13 V_BRF1_01_M01747 TRANSFAC + 39978382 39978394 5.0E-06 GGGATCGAACCCC 13 V_DMRT1_01_M01146 TRANSFAC - 39977290 39977304 9.0E-06 TGGAGACATTTTGGT 15 V_DMRT5_01_M01150 TRANSFAC - 39977437 39977451 5.0E-06 GTTTGTTAGTTTTTT 15 V_PAX6_01_M00097 TRANSFAC + 39977573 39977593 9.0E-06 TTACTTTAAGCCTGAATTATG 21 V_CEBPA_Q6_M01866 TRANSFAC + 39979915 39979927 1.0E-06 AAGTTGTGCAATG 13 V_HOXC9_01_M01416 TRANSFAC + 39979846 39979861 8.0E-06 GGAGGTAGTTAATTGC 16 V_OCT4_01_M01125 TRANSFAC - 39978291 39978305 3.0E-06 ATTTGAAATGAAAAA 15 V_PPARG_01_M00512 TRANSFAC + 39977322 39977342 7.0E-06 CTGGAGGTCAAAGTTGCCCTG 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.