Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PMPCA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23203 peptidase (mitochondrial processing) alpha chr9 + 139300115 - 139305615 139305115 Transcription Factor Binding Sites   Download all TFBS in the PMPCA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 139307616 139307631 9.0E-06 TTGCATACGTAATGGA 16 Pax5_MA0014.1 JASPAR + 139305092 139305111 2.0E-06 TGACGACTGAAGCGGGGCGG 20 Tp53_p53l_DBD_dimeric_18_1 SELEX - 139303957 139303974 2.0E-06 ACAAGTCTGGGAGCTTGT 18 NFIA_NFI_full_dimeric_15_1 SELEX + 139307560 139307574 1.0E-06 TTGGCTGCATGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 139307560 139307574 5.0E-06 CTGGCATGCAGCCAA 15 ZBTB7B_C2H2_full_monomeric_12_1 SELEX + 139304086 139304097 5.0E-06 ACAACCCCCGAA 12 NFIX_NFI_full_dimeric_15_2 SELEX + 139307560 139307574 5.0E-06 TTGGCTGCATGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 139307560 139307574 1.0E-06 CTGGCATGCAGCCAA 15 SPIB_ETS_DBD_monomeric_14_1 SELEX + 139305080 139305093 9.0E-06 CGGAAGCGGAAGTG 14 SP1_MA0079.2 JASPAR - 139305060 139305069 3.0E-06 CCCCTCCCCC 10 YY2_C2H2_full_monomeric_11_1 SELEX - 139305118 139305128 4.0E-06 GCCGCCATCTT 11 POU1F1_POU_DBD_monomeric_17_1 SELEX + 139307613 139307629 9.0E-06 GCCTTGCATACGTAATG 17 NFIB_NFI_full_dimeric_15_1 SELEX + 139307560 139307574 1.0E-06 TTGGCTGCATGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 139307560 139307574 7.0E-06 CTGGCATGCAGCCAA 15 Pou5f1_MA0142.1 JASPAR + 139303583 139303597 4.0E-06 TTTTCTTTTGCACAT 15 ETV6_ETS_full_monomeric_10_1 SELEX + 139305084 139305093 1.0E-06 AGCGGAAGTG 10 ETV6_ETS_full_dimeric_15_1 SELEX + 139304498 139304512 2.0E-06 CGGGAACTGGAAGCG 15 ETV6_ETS_full_dimeric_15_1 SELEX + 139305079 139305093 0.0E+00 GCGGAAGCGGAAGTG 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 139303636 139303648 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 139303637 139303649 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 139303638 139303650 6.0E-06 AAAAAAAAAAAAA 13 V_AREB6_01_M00412 TRANSFAC + 139304535 139304547 3.0E-06 CTCTCACCTGTGT 13 V_TCF3_01_M01594 TRANSFAC + 139303582 139303594 6.0E-06 TTTTTCTTTTGCA 13 V_NF1A_Q6_M02103 TRANSFAC + 139307560 139307575 3.0E-06 TTGGCTGCATGCCAGG 16 V_HMGIY_Q3_M01010 TRANSFAC + 139303634 139303648 1.0E-05 ACTTTTTTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC - 139303636 139303650 6.0E-06 AAAAAAAAAAAAAAA 15 V_BCL6_01_M01183 TRANSFAC + 139303635 139303650 2.0E-06 CTTTTTTTTTTTTTTT 16 V_POU5F1_02_M02245 TRANSFAC + 139303583 139303597 4.0E-06 TTTTCTTTTGCACAT 15 V_EVI1_02_M00079 TRANSFAC + 139304661 139304671 1.0E-05 AGACAAGACCG 11 V_YY1_Q6_M00793 TRANSFAC - 139305117 139305125 7.0E-06 GCCATCTTG 9 V_SP1_03_M02281 TRANSFAC - 139305060 139305069 3.0E-06 CCCCTCCCCC 10 V_TCFAP2E_04_M02926 TRANSFAC - 139303579 139303592 1.0E-05 CAAAAGAAAAAAAC 14 V_TCFAP2E_04_M02926 TRANSFAC - 139303635 139303648 4.0E-06 AAAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 139303636 139303649 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 139303637 139303650 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 139303638 139303651 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 139303639 139303652 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 139303640 139303653 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 139303642 139303655 2.0E-06 GTCTCAAAAAAAAA 14 V_CP2_02_M00947 TRANSFAC + 139307711 139307725 9.0E-06 GCAGGGTTGGGCTGG 15 V_SPIC_01_M02042 TRANSFAC + 139305084 139305093 9.0E-06 AGCGGAAGTG 10 V_ELF4_04_M02850 TRANSFAC - 139303632 139303648 6.0E-06 AAAAAAAAAAAAAGTTC 17 V_ELF4_04_M02850 TRANSFAC - 139303634 139303650 8.0E-06 AAAAAAAAAAAAAAAGT 17 V_ELF4_04_M02850 TRANSFAC - 139303636 139303652 2.0E-06 TCAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 139303637 139303653 3.0E-06 CTCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 139303638 139303654 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 139303639 139303655 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_ZFP105_03_M02827 TRANSFAC - 139303633 139303647 1.0E-06 AAAAAAAAAAAAGTT 15 V_ZFP105_03_M02827 TRANSFAC - 139303634 139303648 2.0E-06 AAAAAAAAAAAAAGT 15 V_ZFP105_03_M02827 TRANSFAC - 139303635 139303649 0.0E+00 AAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC - 139303636 139303650 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 139303637 139303651 1.0E-06 CAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 139303638 139303652 2.0E-06 TCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 139303639 139303653 1.0E-06 CTCAAAAAAAAAAAA 15 V_HES1_Q2_M01009 TRANSFAC - 139307751 139307765 3.0E-06 ATGCCTTGTGCCCCG 15 V_KROX_Q6_M00982 TRANSFAC + 139304937 139304950 4.0E-06 CCCGCCCCCGTCGC 14 V_KROX_Q6_M00982 TRANSFAC + 139304950 139304963 4.0E-06 CCCGCCCCCGTCGC 14 V_KROX_Q6_M00982 TRANSFAC + 139304974 139304987 3.0E-06 GCCGCCCCCGCGCC 14 V_EVI1_01_M00078 TRANSFAC - 139304071 139304086 9.0E-06 TCACAAGACAAGAGGA 16 V_ZF5_B_M00333 TRANSFAC - 139305026 139305038 7.0E-06 CAGGCACGCGCTT 13 V_EGR1_Q6_M01873 TRANSFAC - 139304975 139304984 4.0E-06 GCGGGGGCGG 10 V_PAX5_01_M00143 TRANSFAC - 139303596 139303623 6.0E-06 GTGAGAACCACTGCAGTGGAGACTCCAT 28 V_GADP_01_M01258 TRANSFAC - 139305082 139305093 5.0E-06 CACTTCCGCTTC 12 V_YY1_Q6_02_M01035 TRANSFAC - 139305118 139305128 7.0E-06 GCCGCCATCTT 11 V_REX1_03_M01744 TRANSFAC + 139305118 139305129 1.0E-06 AAGATGGCGGCT 12 V_MUSCLE_INI_B_M00321 TRANSFAC - 139304809 139304829 5.0E-06 CCCGGGCGCCACCCCGCTGTC 21 V_HIC1_02_M01072 TRANSFAC - 139304140 139304154 8.0E-06 GCTGGGTGCCCGGGG 15 V_YY1_03_M02044 TRANSFAC - 139305117 139305128 1.0E-06 GCCGCCATCTTG 12 V_MTF1_06_M02882 TRANSFAC - 139303635 139303648 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 139303636 139303649 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 139303637 139303650 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 139303638 139303651 8.0E-06 CAAAAAAAAAAAAA 14 V_GABPBETA_Q3_M01876 TRANSFAC + 139305084 139305094 1.0E-06 AGCGGAAGTGA 11 V_EHF_06_M02745 TRANSFAC + 139305080 139305094 7.0E-06 CGGAAGCGGAAGTGA 15 V_FAC1_01_M00456 TRANSFAC - 139303636 139303649 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 139303637 139303650 3.0E-06 AAAAAAAAAAAAAA 14 V_ZBTB3_03_M02825 TRANSFAC + 139303601 139303617 5.0E-06 GTCTCCACTGCAGTGGT 17 V_LUN1_01_M00480 TRANSFAC - 139304643 139304659 8.0E-06 CCCCAGCTAAATTGTGA 17 V_ZFP281_01_M01597 TRANSFAC + 139305059 139305069 3.0E-06 AGGGGGAGGGG 11 V_ZFP281_04_M02831 TRANSFAC - 139305057 139305071 7.0E-06 TTCCCCTCCCCCTCG 15 V_SRF_06_M02916 TRANSFAC - 139303575 139303591 6.0E-06 AAAAGAAAAAAACCAAA 17 V_SRF_06_M02916 TRANSFAC - 139303576 139303592 4.0E-06 CAAAAGAAAAAAACCAA 17 V_SRF_06_M02916 TRANSFAC - 139303577 139303593 5.0E-06 GCAAAAGAAAAAAACCA 17 V_SRF_06_M02916 TRANSFAC - 139303579 139303595 1.0E-05 GTGCAAAAGAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 139303632 139303648 0.0E+00 AAAAAAAAAAAAAGTTC 17 V_SRF_06_M02916 TRANSFAC - 139303633 139303649 0.0E+00 AAAAAAAAAAAAAAGTT 17 V_SRF_06_M02916 TRANSFAC - 139303634 139303650 0.0E+00 AAAAAAAAAAAAAAAGT 17 V_SRF_06_M02916 TRANSFAC - 139303635 139303651 0.0E+00 CAAAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC - 139303636 139303652 0.0E+00 TCAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 139303637 139303653 0.0E+00 CTCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 139303638 139303654 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 139303639 139303655 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_CTF1_01_M01196 TRANSFAC - 139307560 139307573 3.0E-06 TGGCATGCAGCCAA 14 V_CTF1_01_M01196 TRANSFAC + 139307561 139307574 4.0E-06 TGGCTGCATGCCAG 14 V_AP2ALPHA_02_M01045 TRANSFAC + 139305039 139305053 6.0E-06 AACGCCTTGGGCCGT 15 V_ELK1_03_M01163 TRANSFAC + 139305083 139305093 1.0E-05 AAGCGGAAGTG 11 V_ZID_01_M00085 TRANSFAC + 139304894 139304906 9.0E-06 CGGCTCCATGGCC 13 V_PBX1_04_M01357 TRANSFAC - 139304440 139304456 4.0E-06 TGACCCATCAATGTGCA 17 V_TCF3_05_M02920 TRANSFAC - 139303640 139303654 4.0E-06 TCTCAAAAAAAAAAA 15 TLX1_NFIC_MA0119.1 JASPAR - 139307560 139307573 3.0E-06 TGGCATGCAGCCAA 14 TLX1_NFIC_MA0119.1 JASPAR + 139307561 139307574 4.0E-06 TGGCTGCATGCCAG 14 V_SMAD1_01_M01590 TRANSFAC - 139303581 139303592 7.0E-06 CAAAAGAAAAAA 12 V_NANOG_02_M01247 TRANSFAC - 139303577 139303596 0.0E+00 TGTGCAAAAGAAAAAAACCA 20 V_NANOG_02_M01247 TRANSFAC - 139303633 139303652 4.0E-06 TCAAAAAAAAAAAAAAAGTT 20 V_OCT4_01_M01125 TRANSFAC + 139303583 139303597 7.0E-06 TTTTCTTTTGCACAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.