Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MCF2L2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23101 MCF.2 cell line derived transforming sequence-like 2 chr3 - 183145355 - 183150855 183145855 Transcription Factor Binding Sites   Download all TFBS in the MCF2L2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 183146793 183146804 0.0E+00 TGACAGGTGACA 12 RFX4_RFX_DBD_dimeric_16_1 SELEX - 183148522 183148537 7.0E-06 TATCTCCATGGAAACC 16 GATA5_GATA_DBD_monomeric_8_1 SELEX - 183148599 183148606 7.0E-06 AGATAAGA 8 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 183146793 183146804 0.0E+00 TGACAGGTGACA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 183146793 183146804 1.0E-06 TGACAGGTGACA 12 GATA4_GATA_DBD_monomeric_8_1 SELEX - 183148599 183148606 7.0E-06 AGATAAGA 8 Tcfcp2l1_MA0145.1 JASPAR - 183148342 183148355 7.0E-06 CCGGCCTAAGCCAG 14 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 183146793 183146804 0.0E+00 TGACAGGTGACA 12 NFATC1_NFAT_full_dimeric_14_1 SELEX + 183148523 183148536 3.0E-06 GTTTCCATGGAGAT 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 183148523 183148536 1.0E-05 ATCTCCATGGAAAC 14 TCF4_bHLH_full_dimeric_10_1 SELEX + 183146670 183146679 9.0E-06 CACACCTGCA 10 Gata1_MA0035.2 JASPAR - 183148598 183148608 2.0E-06 AGAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX - 183148599 183148606 7.0E-06 AGATAAGA 8 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 183146793 183146804 2.0E-06 TGACAGGTGACA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 183146793 183146804 0.0E+00 TGACAGGTGACA 12 PLAG1_MA0163.1 JASPAR + 183146258 183146271 7.0E-06 GGGGCTCTCGGGGA 14 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 183146793 183146804 2.0E-06 TGACAGGTGACA 12 V_GATA1_Q6_M02004 TRANSFAC - 183148597 183148611 7.0E-06 GTCAGAGATAAGAGC 15 V_GATA2_02_M00348 TRANSFAC - 183148599 183148608 0.0E+00 AGAGATAAGA 10 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 183146791 183146804 8.0E-06 TGACAGGTGACAGA 14 V_SP1_02_M01303 TRANSFAC + 183146388 183146398 3.0E-06 GGGGCGGGGAG 11 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 183148322 183148336 3.0E-06 TGAGGTTACTGGATC 15 V_E2F1_01_M01250 TRANSFAC - 183145894 183145901 1.0E-05 CGTTTCTT 8 V_NFE4_Q5_M02105 TRANSFAC + 183145928 183145939 2.0E-06 CTCCCTCGCCAC 12 V_GATA1_09_M02254 TRANSFAC - 183148598 183148608 2.0E-06 AGAGATAAGAG 11 V_STAT4_Q5_M02117 TRANSFAC - 183145256 183145265 0.0E+00 TTATAAGAAA 10 V_LMO2COM_01_M00277 TRANSFAC + 183146162 183146173 0.0E+00 CGCCAGGTGCAG 12 V_BLIMP1_Q6_M01066 TRANSFAC - 183148502 183148517 5.0E-06 AGGACTGTGAAAGTAC 16 V_HFH8_01_M00294 TRANSFAC - 183145259 183145271 6.0E-06 GCTTGTTTATAAG 13 V_SIRT6_01_M01797 TRANSFAC - 183148599 183148606 7.0E-06 AGATAAGA 8 V_FOXL1_04_M02753 TRANSFAC + 183145257 183145273 6.0E-06 TTCTTATAAACAAGCCT 17 V_GATA3_02_M00350 TRANSFAC - 183148599 183148608 1.0E-06 AGAGATAAGA 10 V_E2F6_01_M01252 TRANSFAC - 183145894 183145901 1.0E-05 CGTTTCTT 8 V_TCF7_04_M02921 TRANSFAC + 183145255 183145269 1.0E-06 CTTTCTTATAAACAA 15 V_E47_01_M00002 TRANSFAC - 183146667 183146681 5.0E-06 AGTGCAGGTGTGGCC 15 V_NFAT2_02_M01749 TRANSFAC - 183148524 183148534 1.0E-06 CTCCATGGAAA 11 V_NFAT2_02_M01749 TRANSFAC + 183148525 183148535 5.0E-06 TTCCATGGAGA 11 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 183148324 183148338 0.0E+00 GCTGAGGTTACTGGA 15 V_GATA2_03_M00349 TRANSFAC - 183148599 183148608 0.0E+00 AGAGATAAGA 10 V_GATA1_06_M00347 TRANSFAC - 183148599 183148608 3.0E-06 AGAGATAAGA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.