Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TTC39A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 22996 tetratricopeptide repeat domain 39A chr1 - 51810285 - 51815785 51810785 Transcription Factor Binding Sites   Download all TFBS in the TTC39A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFYA_MA0060.1 JASPAR - 51806275 51806290 7.0E-06 TTCAACCAATCACTGT 16 POU3F4_POU_DBD_monomeric_9_1 SELEX + 51807969 51807977 7.0E-06 AATGCAAAT 9 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 51812743 51812761 5.0E-06 TATTTGGGTCAGAAGTTTA 19 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 51812856 51812874 5.0E-06 GAATTATGTTACTTGGGCA 19 Gfi_MA0038.1 JASPAR - 51806276 51806285 7.0E-06 CCAATCACTG 10 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 51808010 51808025 8.0E-06 CGAGAAAGAAGTGAAC 16 POU3F3_POU_DBD_dimeric_12_1 SELEX - 51812828 51812839 5.0E-06 AAGAATAAGAAA 12 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 51812747 51812762 4.0E-06 TGGGTCAGAAGTTTAG 16 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 51812747 51812761 3.0E-06 TGGGTCAGAAGTTTA 15 RORA_2_MA0072.1 JASPAR + 51812741 51812754 1.0E-06 AATATTTGGGTCAG 14 V_NFY_Q6_M00185 TRANSFAC - 51806278 51806288 5.0E-06 CAACCAATCAC 11 V_FOXJ1_04_M02854 TRANSFAC + 51807995 51808009 3.0E-06 ACCTCATAACAGTAC 15 V_RORA_Q4_M01138 TRANSFAC + 51812743 51812753 5.0E-06 TATTTGGGTCA 11 V_OCT1_Q5_01_M00930 TRANSFAC - 51807969 51807979 6.0E-06 GTATTTGCATT 11 V_GATA1_03_M00127 TRANSFAC + 51807986 51807999 7.0E-06 AGGAAGATTACCTC 14 V_POU3F2_02_M00464 TRANSFAC + 51812859 51812868 9.0E-06 TTATGTTACT 10 V_HNF4A_04_M02764 TRANSFAC - 51806251 51806267 7.0E-06 GAGGTGGGGTCAAGTAA 17 V_PU1_Q4_M01172 TRANSFAC + 51812832 51812850 1.0E-06 TTATTCTTCTTCCTCATCT 19 V_NFY_Q6_01_M00775 TRANSFAC - 51806279 51806291 1.0E-06 CTTCAACCAATCA 13 V_CEBPB_01_M00109 TRANSFAC + 51812755 51812768 1.0E-06 AAGTTTAGAAATGT 14 V_NFY_C_M00209 TRANSFAC + 51806277 51806290 2.0E-06 AGTGATTGGTTGAA 14 V_RXRA_03_M02791 TRANSFAC + 51806251 51806267 7.0E-06 TTACTTGACCCCACCTC 17 V_SZF11_01_M01109 TRANSFAC - 51807970 51807984 8.0E-06 CCAGGGTATTTGCAT 15 V_MEF2_04_M00233 TRANSFAC - 51812726 51812747 9.0E-06 AAATATTCTTAAAACAGTTGTC 22 V_OCAB_Q6_M02113 TRANSFAC + 51807741 51807751 7.0E-06 ATCTGCACATC 11 V_OCT1_B_M00342 TRANSFAC + 51807969 51807978 2.0E-06 AATGCAAATA 10 V_OCT_Q6_M00795 TRANSFAC - 51807969 51807979 4.0E-06 GTATTTGCATT 11 V_GATA4_Q3_M00632 TRANSFAC + 51808012 51808023 7.0E-06 AGAAAGAAGTGA 12 V_CAAT_01_M00254 TRANSFAC - 51806279 51806290 3.0E-06 TTCAACCAATCA 12 V_RARA_04_M02891 TRANSFAC - 51806252 51806267 7.0E-06 GAGGTGGGGTCAAGTA 16 V_MTF1_06_M02882 TRANSFAC - 51812824 51812837 3.0E-06 GAATAAGAAACAAG 14 V_NFYC_Q5_M02107 TRANSFAC - 51806275 51806288 1.0E-05 CAACCAATCACTGT 14 V_POU5F1_01_M01307 TRANSFAC + 51807969 51807978 1.0E-06 AATGCAAATA 10 V_TAL1_01_M01591 TRANSFAC + 51812840 51812852 1.0E-06 CTTCCTCATCTGT 13 V_OCT1_Q6_M00195 TRANSFAC + 51807966 51807980 4.0E-06 CTCAATGCAAATACC 15 V_NFY_01_M00287 TRANSFAC - 51806275 51806290 1.0E-05 TTCAACCAATCACTGT 16 V_PIT1_Q6_M00802 TRANSFAC + 51806246 51806263 5.0E-06 TCTTCTTACTTGACCCCA 18 V_MEF2_01_M00006 TRANSFAC + 51808055 51808070 2.0E-06 CTTTACAAATGACTTC 16 V_GLIS2_04_M02863 TRANSFAC - 51812733 51812746 5.0E-06 AATATTCTTAAAAC 14 V_RORA2_01_M00157 TRANSFAC + 51812742 51812754 2.0E-06 ATATTTGGGTCAG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.