Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SHANK2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 22941 SH3 and multiple ankyrin repeat domains 2 chr11 - 70935308 - 70940808 70935808 Transcription Factor Binding Sites   Download all TFBS in the SHANK2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NF-kappaB_MA0061.1 JASPAR + 70940120 70940129 1.0E-06 GGGAATTTCC 10 NF-kappaB_MA0061.1 JASPAR - 70940121 70940130 9.0E-06 GGGAAATTCC 10 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 70940179 70940190 6.0E-06 AATAAAAACAAA 12 NFKB1_MA0105.1 JASPAR + 70940120 70940130 9.0E-06 GGGAATTTCCC 11 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 70940066 70940081 9.0E-06 TGAATTTTGTTAAATG 16 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 70940119 70940131 8.0E-06 TGGGAATTTCCCC 13 REL_MA0101.1 JASPAR + 70940120 70940129 2.0E-06 GGGAATTTCC 10 RELA_MA0107.1 JASPAR + 70940120 70940129 1.0E-06 GGGAATTTCC 10 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 70940195 70940206 1.0E-05 TTTCCCCATATG 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 70940177 70940186 9.0E-06 CAAATAAAAA 10 CPEB1_RRM_full_monomeric_8_1 SELEX + 70940179 70940186 4.0E-06 AATAAAAA 8 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 70940176 70940188 3.0E-06 CCAAATAAAAACA 13 V_NFKAPPAB65_01_M00052 TRANSFAC + 70940120 70940129 1.0E-06 GGGAATTTCC 10 V_NFKB_C_M00208 TRANSFAC + 70940119 70940130 4.0E-06 TGGGAATTTCCC 12 V_NFKB_Q6_01_M00774 TRANSFAC - 70940119 70940134 0.0E+00 GTGGGGGAAATTCCCA 16 V_HSF1_Q6_M01023 TRANSFAC - 70933506 70933522 3.0E-06 CCTCTGGGAGCTTCGTA 17 V_HMGIY_Q3_M01010 TRANSFAC - 70940183 70940197 6.0E-06 AAAGCATTTTGTTTT 15 V_BCL6_01_M01183 TRANSFAC - 70940178 70940193 3.0E-06 CATTTTGTTTTTATTT 16 V_FOXO4_02_M00476 TRANSFAC - 70940179 70940192 3.0E-06 ATTTTGTTTTTATT 14 V_HOXA13_02_M01297 TRANSFAC + 70940178 70940186 4.0E-06 AAATAAAAA 9 V_RELBP52_01_M01239 TRANSFAC + 70940120 70940129 7.0E-06 GGGAATTTCC 10 V_MAFB_03_M02879 TRANSFAC + 70940280 70940294 5.0E-06 ATATGGCAAAAAAAC 15 V_CEBP_01_M00159 TRANSFAC - 70940170 70940182 2.0E-06 TATTTGGTGAATC 13 V_FOXO3A_Q1_M01137 TRANSFAC + 70940181 70940192 1.0E-06 TAAAAACAAAAT 12 V_P50P50_Q3_M01223 TRANSFAC + 70940118 70940130 4.0E-06 ATGGGAATTTCCC 13 V_P50P50_Q3_M01223 TRANSFAC - 70940120 70940132 5.0E-06 GGGGGAAATTCCC 13 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 70940121 70940132 1.0E-06 GGAATTTCCCCC 12 V_FOXA2_02_M02853 TRANSFAC + 70940179 70940193 6.0E-06 AATAAAAACAAAATG 15 V_PR_Q2_M00960 TRANSFAC + 70940139 70940148 4.0E-06 TAAAGAACAT 10 V_ZFP105_03_M02827 TRANSFAC + 70940175 70940189 2.0E-06 ACCAAATAAAAACAA 15 V_ZFP105_03_M02827 TRANSFAC + 70940178 70940192 4.0E-06 AAATAAAAACAAAAT 15 V_HOXB13_01_M01467 TRANSFAC + 70940174 70940189 8.0E-06 CACCAAATAAAAACAA 16 V_FOXO1_02_M00474 TRANSFAC - 70940179 70940192 8.0E-06 ATTTTGTTTTTATT 14 V_CREL_01_M00053 TRANSFAC + 70940120 70940129 2.0E-06 GGGAATTTCC 10 V_NFKB_Q6_M00194 TRANSFAC + 70940118 70940131 0.0E+00 ATGGGAATTTCCCC 14 V_NFKB_Q6_M00194 TRANSFAC - 70940119 70940132 5.0E-06 GGGGGAAATTCCCA 14 V_NKX52_01_M01315 TRANSFAC + 70940061 70940077 8.0E-06 AAAAGCATTTAACAAAA 17 V_CDC5_01_M00478 TRANSFAC + 70940066 70940077 5.0E-06 CATTTAACAAAA 12 V_FOXO1_Q5_M01216 TRANSFAC + 70940182 70940190 1.0E-06 AAAAACAAA 9 V_MTF1_06_M02882 TRANSFAC + 70940178 70940191 2.0E-06 AAATAAAAACAAAA 14 V_BARHL1_01_M01332 TRANSFAC + 70940060 70940075 2.0E-06 AAAAAGCATTTAACAA 16 V_FOXL1_02_M02857 TRANSFAC + 70940178 70940193 1.0E-06 AAATAAAAACAAAATG 16 V_FOXL1_04_M02753 TRANSFAC + 70940177 70940193 3.0E-06 CAAATAAAAACAAAATG 17 V_FOXO3_01_M00477 TRANSFAC - 70940179 70940192 4.0E-06 ATTTTGTTTTTATT 14 V_MEF3_B_M00319 TRANSFAC - 70940155 70940167 1.0E-05 GGCTCATGTTTCT 13 V_NFKAPPAB_01_M00054 TRANSFAC + 70940120 70940129 1.0E-06 GGGAATTTCC 10 V_NFKAPPAB_01_M00054 TRANSFAC - 70940121 70940130 7.0E-06 GGGAAATTCC 10 V_FOXO1_01_M00473 TRANSFAC + 70940181 70940190 9.0E-06 TAAAAACAAA 10 V_SOX2_Q6_M01272 TRANSFAC - 70940181 70940196 5.0E-06 AAGCATTTTGTTTTTA 16 V_BARHL2_01_M01446 TRANSFAC + 70940060 70940075 0.0E+00 AAAAAGCATTTAACAA 16 V_FOXO4_01_M00472 TRANSFAC + 70940182 70940192 1.0E-05 AAAAACAAAAT 11 V_FOXK1_03_M02752 TRANSFAC + 70940177 70940193 3.0E-06 CAAATAAAAACAAAATG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.