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SEMA3D Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 223117 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D chr7 - 84750747 - 84756247 84751247 Transcription Factor Binding Sites   Download all TFBS in the SEMA3D promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX + 84755173 84755183 4.0E-06 TAGGTGTGATT 11 LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 84755255 84755267 3.0E-06 CTGGAGCCAATTA 13 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 84749494 84749501 5.0E-06 ATAAACAA 8 VSX1_homeodomain_full_monomeric_11_1 SELEX + 84755259 84755269 1.0E-06 AGCCAATTAAC 11 POU2F1_POU_DBD_dimeric_14_1 SELEX + 84755399 84755412 7.0E-06 AATGCATAATCTAA 14 POU3F3_POU_DBD_monomeric_12_1 SELEX + 84755400 84755411 4.0E-06 ATGCATAATCTA 12 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 84755016 84755028 8.0E-06 TTAAAGGATTAAC 13 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 84755038 84755050 4.0E-06 TTTATGGGTTAAA 13 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 84749453 84749464 0.0E+00 TCTAAAAATAGT 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 84755399 84755411 2.0E-06 AATGCATAATCTA 13 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 84755026 84755040 2.0E-06 TAATTGAGATAATTT 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 84755026 84755040 7.0E-06 AAATTATCTCAATTA 15 POU3F4_POU_DBD_monomeric_11_1 SELEX + 84755401 84755411 3.0E-06 TGCATAATCTA 11 ESX1_homeodomain_full_monomeric_10_1 SELEX + 84755260 84755269 9.0E-06 GCCAATTAAC 10 HNF1B_MA0153.1 JASPAR + 84755010 84755021 3.0E-06 TCAATAGTTAAT 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 84749453 84749464 0.0E+00 TCTAAAAATAGT 12 MSX1_homeodomain_full_monomeric_8_1 SELEX + 84755261 84755268 7.0E-06 CCAATTAA 8 OTX2_homeodomain_DBD_dimeric_15_1 SELEX + 84755016 84755030 7.0E-06 GTTAATCCTTTAATT 15 MSX2_homeodomain_DBD_monomeric_8_1 SELEX + 84755261 84755268 7.0E-06 CCAATTAA 8 GBX2_homeodomain_full_monomeric_10_1 SELEX + 84755260 84755269 5.0E-06 GCCAATTAAC 10 LEF1_HMG_DBD_monomeric_15_1 SELEX - 84749420 84749434 0.0E+00 AAAGATGAAAGAAAT 15 MEF2B_MADS_full_dimeric_12_1 SELEX + 84749453 84749464 0.0E+00 TCTAAAAATAGT 12 EOMES_TBX_DBD_monomeric_13_1 SELEX + 84755173 84755185 3.0E-06 TAGGTGTGATTTA 13 T_MA0009.1 JASPAR + 84755172 84755182 2.0E-06 GTAGGTGTGAT 11 Foxq1_MA0040.1 JASPAR + 84749492 84749502 8.0E-06 AGTTGTTTATG 11 MEF2A_MA0052.1 JASPAR - 84749454 84749463 1.0E-06 CTATTTTTAG 10 RAX_homeodomain_DBD_monomeric_10_1 SELEX + 84755260 84755269 7.0E-06 GCCAATTAAC 10 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 84755017 84755024 7.0E-06 TTAATCCT 8 TBR1_TBX_full_monomeric_11_1 SELEX + 84755173 84755183 8.0E-06 TAGGTGTGATT 11 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 84755077 84755090 8.0E-06 AAAATATCAATAGA 14 Gfi_MA0038.1 JASPAR - 84755176 84755185 7.0E-06 TAAATCACAC 10 znf143_MA0088.1 JASPAR - 84755152 84755171 5.0E-06 TTCTCTCCATAATTCATCCC 20 Lhx3_MA0135.1 JASPAR - 84755011 84755023 1.0E-05 GGATTAACTATTG 13 EN1_homeodomain_DBD_monomeric_10_1 SELEX + 84755260 84755269 8.0E-06 GCCAATTAAC 10 HESX1_homeodomain_DBD_monomeric_10_1 SELEX - 84755260 84755269 5.0E-06 GTTAATTGGC 10 BSX_homeodomain_DBD_monomeric_8_1 SELEX + 84755261 84755268 7.0E-06 CCAATTAA 8 POU1F1_POU_DBD_monomeric_17_1 SELEX + 84755397 84755413 8.0E-06 CAAATGCATAATCTAAC 17 TBX21_TBX_full_monomeric_10_1 SELEX + 84755173 84755182 5.0E-06 TAGGTGTGAT 10 PITX1_homeodomain_full_monomeric_9_1 SELEX + 84755016 84755024 9.0E-06 GTTAATCCT 9 Msx3_homeodomain_DBD_monomeric_8_1 SELEX + 84755261 84755268 7.0E-06 CCAATTAA 8 POU3F1_POU_DBD_monomeric_12_2 SELEX + 84755400 84755411 2.0E-06 ATGCATAATCTA 12 MTF1_C2H2_DBD_monomeric_14_1 SELEX - 84755118 84755131 2.0E-06 TGTGCACACAACAC 14 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 84755025 84755041 1.0E-06 TTAATTGAGATAATTTA 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 84755025 84755041 2.0E-06 TAAATTATCTCAATTAA 17 TBX20_TBX_DBD_monomeric_15_1 SELEX + 84755170 84755184 5.0E-06 AAGTAGGTGTGATTT 15 LBX2_homeodomain_DBD_monomeric_10_1 SELEX + 84755260 84755269 1.0E-05 GCCAATTAAC 10 DMBX1_homeodomain_DBD_monomeric_10_1 SELEX - 84755016 84755025 7.0E-06 AAGGATTAAC 10 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 84749494 84749501 5.0E-06 ATAAACAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 84754978 84754990 9.0E-06 AGAAAAACAAAGA 13 DPRX_homeodomain_DBD_monomeric_10_1 SELEX - 84755016 84755025 3.0E-06 AAGGATTAAC 10 RREB1_MA0073.1 JASPAR - 84755107 84755126 0.0E+00 ACACAACACACACACACACA 20 RREB1_MA0073.1 JASPAR - 84755109 84755128 6.0E-06 GCACACAACACACACACACA 20 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 84755077 84755090 3.0E-06 AAAATATCAATAGA 14 V_MEQ_01_M02049 TRANSFAC - 84755114 84755122 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC - 84755135 84755143 7.0E-06 AACACACAC 9 V_OBOX6_01_M01445 TRANSFAC - 84755015 84755029 2.0E-06 ATTAAAGGATTAACT 15 V_ZSCAN4_03_M02838 TRANSFAC - 84755119 84755135 0.0E+00 CACATGTGCACACAACA 17 V_TCF3_01_M01594 TRANSFAC + 84754978 84754990 0.0E+00 TCTTTGTTTTTCT 13 V_LEF1_04_M02774 TRANSFAC + 84749419 84749435 5.0E-06 TATTTCTTTCATCTTTG 17 V_EBF_Q6_M00977 TRANSFAC + 84755435 84755445 8.0E-06 TTCCCTAAGGA 11 V_POU3F3_01_M03090 TRANSFAC + 84755395 84755411 3.0E-06 TCCAAATGCATAATCTA 17 V_OBOX5_05_M03066 TRANSFAC - 84755012 84755028 1.0E-06 TTAAAGGATTAACTATT 17 V_MAFK_03_M02776 TRANSFAC + 84755084 84755098 4.0E-06 ATATTTTGCTGTCTT 15 V_OBOX1_01_M01450 TRANSFAC - 84755013 84755029 1.0E-06 ATTAAAGGATTAACTAT 17 V_HNF1_02_M01379 TRANSFAC + 84755177 84755193 2.0E-06 TGTGATTTAACCAAAAG 17 V_COE1_Q6_M01871 TRANSFAC + 84755310 84755323 1.0E-05 ACTCTTGGGAATCT 14 V_GM397_03_M02760 TRANSFAC - 84755119 84755135 2.0E-06 CACATGTGCACACAACA 17 V_HOXA13_02_M01297 TRANSFAC - 84749415 84749423 3.0E-06 AAATAAACC 9 V_LBX2_01_M01401 TRANSFAC - 84755020 84755036 7.0E-06 TATCTCAATTAAAGGAT 17 V_MEF2_02_M00231 TRANSFAC + 84749447 84749468 0.0E+00 TCAATATCTAAAAATAGTTGCT 22 V_OCTAMER_01_M01324 TRANSFAC + 84755395 84755411 3.0E-06 TCCAAATGCATAATCTA 17 V_TBR2_01_M01774 TRANSFAC + 84755174 84755182 6.0E-06 AGGTGTGAT 9 V_RP58_01_M00532 TRANSFAC - 84755284 84755295 8.0E-06 GGAGCATCTGGA 12 V_GTF2IRD1_01_M01229 TRANSFAC + 84749390 84749398 9.0E-06 GGGATTATA 9 V_PITX2_Q6_M02114 TRANSFAC - 84749389 84749398 3.0E-06 TATAATCCCA 10 V_AREB6_04_M00415 TRANSFAC - 84755300 84755308 8.0E-06 CTGTTTCTA 9 V_AFP1_Q6_M00616 TRANSFAC - 84749471 84749481 2.0E-06 ATAAACTACAT 11 V_AFP1_Q6_M00616 TRANSFAC + 84755264 84755274 1.0E-06 ATTAACTGCAT 11 V_FOXP3_01_M01599 TRANSFAC - 84749494 84749501 5.0E-06 ATAAACAA 8 V_CDX_Q5_M00991 TRANSFAC - 84749417 84749434 8.0E-06 AAAGATGAAAGAAATAAA 18 V_HELIOSA_01_M01003 TRANSFAC - 84755433 84755443 9.0E-06 CTTAGGGAAAT 11 V_CEBPB_01_M00109 TRANSFAC - 84749440 84749453 2.0E-06 ATATTGAGCAATAG 14 V_MEF2A_Q6_M02024 TRANSFAC - 84749453 84749462 0.0E+00 TATTTTTAGA 10 V_HNF1_C_M00206 TRANSFAC + 84755015 84755031 2.0E-06 AGTTAATCCTTTAATTG 17 V_OBOX5_02_M01480 TRANSFAC - 84755012 84755028 1.0E-06 TTAAAGGATTAACTATT 17 V_TCF3_04_M02816 TRANSFAC - 84749419 84749435 2.0E-06 CAAAGATGAAAGAAATA 17 V_FOXA2_02_M02853 TRANSFAC - 84755077 84755091 1.0E-05 CAAAATATCAATAGA 15 V_OCT1_03_M00137 TRANSFAC - 84755349 84755361 2.0E-06 CTCATAATCAGAA 13 V_ARX_01_M01423 TRANSFAC + 84755020 84755036 1.0E-05 ATCCTTTAATTGAGATA 17 V_POLY_C_M00212 TRANSFAC - 84755191 84755208 8.0E-06 CACTAAATCCACCCACTT 18 V_MRF2_01_M00454 TRANSFAC - 84755081 84755094 9.0E-06 CAGCAAAATATCAA 14 V_MRF2_01_M00454 TRANSFAC - 84755136 84755149 9.0E-06 ATGCACAACACACA 14 V_RSRFC4_Q2_M00407 TRANSFAC + 84749451 84749467 1.0E-06 TATCTAAAAATAGTTGC 17 V_OLF1_01_M00261 TRANSFAC + 84755430 84755451 7.0E-06 GCCATTTCCCTAAGGAACACAA 22 V_HNF1B_04_M02266 TRANSFAC + 84755010 84755021 3.0E-06 TCAATAGTTAAT 12 V_HNF1_Q6_01_M01011 TRANSFAC - 84755012 84755032 5.0E-06 TCAATTAAAGGATTAACTATT 21 V_OBOX2_01_M01364 TRANSFAC - 84755013 84755029 2.0E-06 ATTAAAGGATTAACTAT 17 V_MEF2_03_M00232 TRANSFAC + 84749447 84749468 0.0E+00 TCAATATCTAAAAATAGTTGCT 22 V_GR_Q6_M00192 TRANSFAC - 84755441 84755459 5.0E-06 TGGACTCTTTGTGTTCCTT 19 V_MEF2_04_M00233 TRANSFAC + 84749447 84749468 4.0E-06 TCAATATCTAAAAATAGTTGCT 22 V_TCF7_03_M02817 TRANSFAC - 84749419 84749435 0.0E+00 CAAAGATGAAAGAAATA 17 V_POU6F1_01_M00465 TRANSFAC - 84755034 84755044 1.0E-06 CCATAAATTAT 11 V_POU6F1_01_M00465 TRANSFAC - 84755275 84755285 4.0E-06 GAATAGATTAT 11 V_SOX11_03_M02795 TRANSFAC - 84754974 84754990 0.0E+00 AGAAAAACAAAGAATCA 17 V_ARX_02_M02945 TRANSFAC + 84755020 84755036 1.0E-05 ATCCTTTAATTGAGATA 17 V_FOXO1_Q5_M01216 TRANSFAC - 84754980 84754988 1.0E-06 AAAAACAAA 9 V_EVI1_06_M00011 TRANSFAC - 84749478 84749486 7.0E-06 ACTAGATAA 9 V_OTX2_Q3_M01719 TRANSFAC - 84755015 84755027 1.0E-06 TAAAGGATTAACT 13 V_MTF1_06_M02882 TRANSFAC - 84749421 84749434 6.0E-06 AAAGATGAAAGAAA 14 V_TBP_01_M00471 TRANSFAC + 84755003 84755010 8.0E-06 TATAAATT 8 V_OBOX2_02_M03064 TRANSFAC - 84755013 84755029 2.0E-06 ATTAAAGGATTAACTAT 17 V_FAC1_01_M00456 TRANSFAC - 84754978 84754991 7.0E-06 AAGAAAAACAAAGA 14 V_FAC1_01_M00456 TRANSFAC - 84755115 84755128 1.0E-06 GCACACAACACACA 14 V_FAC1_01_M00456 TRANSFAC - 84755136 84755149 1.0E-06 ATGCACAACACACA 14 V_CEBPA_01_M00116 TRANSFAC + 84749440 84749453 4.0E-06 CTATTGCTCAATAT 14 V_GFI1B_01_M01058 TRANSFAC - 84755174 84755185 3.0E-06 TAAATCACACCT 12 V_GFI1B_01_M01058 TRANSFAC + 84755384 84755395 7.0E-06 TAAATCAGAGAT 12 V_PITX1_01_M01484 TRANSFAC - 84755013 84755029 1.0E-06 ATTAAAGGATTAACTAT 17 V_DOBOX5_01_M01463 TRANSFAC - 84755012 84755028 0.0E+00 TTAAAGGATTAACTATT 17 V_OTX2_01_M01387 TRANSFAC - 84755012 84755028 0.0E+00 TTAAAGGATTAACTATT 17 V_PITX2_Q2_M00482 TRANSFAC - 84749388 84749398 1.0E-06 TATAATCCCAG 11 V_RSRFC4_01_M00026 TRANSFAC + 84749451 84749466 8.0E-06 TATCTAAAAATAGTTG 16 V_RSRFC4_01_M00026 TRANSFAC - 84749451 84749466 1.0E-06 CAACTATTTTTAGATA 16 V_CEBPB_Q6_M01896 TRANSFAC - 84749441 84749450 5.0E-06 TTGAGCAATA 10 V_TBX5_Q5_M01044 TRANSFAC - 84755173 84755182 7.0E-06 ATCACACCTA 10 V_SOX8_03_M02808 TRANSFAC + 84755074 84755090 7.0E-06 TACTCTATTGATATTTT 17 V_SRF_06_M02916 TRANSFAC - 84754977 84754993 6.0E-06 GGAAGAAAAACAAAGAA 17 V_HOXD8_01_M01432 TRANSFAC + 84755031 84755047 8.0E-06 GAGATAATTTATGGGTT 17 V_SOX1_03_M02802 TRANSFAC + 84755003 84755018 0.0E+00 TATAAATTCAATAGTT 16 V_SOX1_03_M02802 TRANSFAC - 84755004 84755019 3.0E-06 TAACTATTGAATTTAT 16 V_GSC_01_M01428 TRANSFAC + 84755012 84755028 0.0E+00 AATAGTTAATCCTTTAA 17 V_FOXO1_01_M00473 TRANSFAC - 84749493 84749502 7.0E-06 CATAAACAAC 10 V_SOX2_Q6_M01272 TRANSFAC + 84754974 84754989 2.0E-06 TGATTCTTTGTTTTTC 16 V_PITX2_01_M01447 TRANSFAC - 84755012 84755028 0.0E+00 TTAAAGGATTAACTATT 17 V_PIT1_Q6_M00802 TRANSFAC - 84755151 84755168 9.0E-06 TCTCCATAATTCATCCCA 18 V_MEF2_01_M00006 TRANSFAC - 84749490 84749505 9.0E-06 TTCCATAAACAACTCT 16 V_FOXO4_01_M00472 TRANSFAC - 84749491 84749501 2.0E-06 ATAAACAACTC 11 V_CEBP_Q2_01_M00912 TRANSFAC + 84749442 84749453 3.0E-06 ATTGCTCAATAT 12 V_GFI1_Q6_01_M02010 TRANSFAC - 84755384 84755393 7.0E-06 CTCTGATTTA 10 V_TAACC_B_M00331 TRANSFAC + 84755398 84755420 0.0E+00 AAATGCATAATCTAACCTCAAGA 23 V_OBOX5_01_M01381 TRANSFAC - 84755012 84755028 0.0E+00 TTAAAGGATTAACTATT 17 V_OBOX6_02_M03068 TRANSFAC - 84755015 84755029 2.0E-06 ATTAAAGGATTAACT 15 V_OBOX3_02_M03065 TRANSFAC - 84755013 84755029 1.0E-06 ATTAAAGGATTAACTAT 17 V_OTX1_01_M01366 TRANSFAC - 84755012 84755028 1.0E-06 TTAAAGGATTAACTATT 17 V_OBOX6_06_M03067 TRANSFAC + 84755012 84755028 0.0E+00 AATAGTTAATCCTTTAA 17 V_OBOX3_01_M01466 TRANSFAC - 84755013 84755029 1.0E-06 ATTAAAGGATTAACTAT 17 V_SMAD1_01_M01590 TRANSFAC - 84754977 84754988 0.0E+00 AAAAACAAAGAA 12 V_SOX9_Q4_M01284 TRANSFAC - 84754976 84754986 7.0E-06 AAACAAAGAAT 11 V_CEBPA_Q6_M01866 TRANSFAC - 84749441 84749453 2.0E-06 ATATTGAGCAATA 13 V_NANOG_02_M01247 TRANSFAC - 84754973 84754992 1.0E-06 GAAGAAAAACAAAGAATCAG 20 V_OTX3_01_M01403 TRANSFAC - 84755013 84755029 3.0E-06 ATTAAAGGATTAACTAT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.