Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GDPD4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 220032 glycerophosphodiester phosphodiesterase domain containing 4 chr11 - 76997963 - 77003463 76998463 Transcription Factor Binding Sites   Download all TFBS in the GDPD4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU3F3_POU_DBD_monomeric_12_1 SELEX - 76998766 76998777 0.0E+00 TTGCATATATTA 12 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 76998758 76998771 3.0E-06 AAATTAGATAATAT 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 76998758 76998771 1.0E-05 ATATTATCTAATTT 14 POU3F2_POU_DBD_monomeric_13_1 SELEX - 76998766 76998778 0.0E+00 TTTGCATATATTA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX - 76998766 76998776 1.0E-06 TGCATATATTA 11 HNF1B_MA0153.1 JASPAR + 76998863 76998874 7.0E-06 CTAATAAGTGAC 12 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 76998426 76998442 6.0E-06 AAGGTCAACAGGATTGA 17 EBF1_MA0154.1 JASPAR + 76994461 76994470 5.0E-06 ACTCAAGGGA 10 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 76998757 76998769 9.0E-06 ATTATCTAATTTG 13 Klf4_MA0039.2 JASPAR - 76999658 76999667 5.0E-06 TGGGTGGGGC 10 POU4F3_POU_DBD_monomeric_16_1 SELEX - 76998938 76998953 6.0E-06 ATTCATAATTGAAGCT 16 POU4F3_POU_DBD_monomeric_16_1 SELEX + 76998941 76998956 7.0E-06 TTCAATTATGAATGAT 16 RUNX3_RUNX_full_monomeric_10_1 SELEX - 76998356 76998365 5.0E-06 CAACCACAAA 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 76998950 76998962 9.0E-06 GAATGATGGAATC 13 SOX15_HMG_full_dimeric_15_1 SELEX + 76998846 76998860 1.0E-05 GAAAATACCATCGTT 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 76998992 76999002 8.0E-06 AAAAATAAACT 11 PBX1_MA0070.1 JASPAR - 76998947 76998958 6.0E-06 CCATCATTCATA 12 POU1F1_POU_DBD_monomeric_17_1 SELEX - 76998764 76998780 1.0E-05 CGTTTGCATATATTATC 17 POU1F1_POU_DBD_monomeric_17_1 SELEX - 76998940 76998956 4.0E-06 ATCATTCATAATTGAAG 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 76998758 76998768 9.0E-06 TTATCTAATTT 11 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 76998757 76998769 1.0E-05 ATTATCTAATTTG 13 Stat3_MA0144.1 JASPAR + 76994289 76994298 1.0E-05 TGCCTGGAAG 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 77001373 77001381 9.0E-06 CACATAAAA 9 POU3F1_POU_DBD_monomeric_12_2 SELEX - 76998766 76998777 2.0E-06 TTGCATATATTA 12 TEAD1_TEA_full_dimeric_17_1 SELEX - 76998971 76998987 9.0E-06 ACATTTCAGCCATTGTT 17 CPEB1_RRM_full_monomeric_8_1 SELEX + 76999643 76999650 4.0E-06 AATAAAAA 8 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 76998758 76998771 6.0E-06 AAATTAGATAATAT 14 Sox2_MA0143.1 JASPAR - 76998964 76998978 9.0E-06 CCATTGTTGTTTTGA 15 NFE2L2_MA0150.1 JASPAR + 76998345 76998355 2.0E-06 GTGACAAAGCA 11 POU4F1_POU_DBD_monomeric_14_1 SELEX - 76998940 76998953 4.0E-06 ATTCATAATTGAAG 14 POU4F1_POU_DBD_monomeric_14_1 SELEX + 76998941 76998954 9.0E-06 TTCAATTATGAATG 14 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 76998840 76998851 7.0E-06 GTACATGAAAAT 12 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 76999008 76999021 5.0E-06 GCCAACAAAAAATA 14 V_DMRT4_01_M01149 TRANSFAC + 76998983 76998995 4.0E-06 AATGTGACAAGTT 13 V_FOXP1_01_M00987 TRANSFAC + 76994419 76994438 8.0E-06 CTATTTTTGCTGTCTTGTGG 20 V_AP1_Q2_M00173 TRANSFAC + 76998869 76998879 0.0E+00 AGTGACTCAGA 11 V_POU3F3_01_M03090 TRANSFAC - 76998766 76998782 3.0E-06 CACGTTTGCATATATTA 17 V_OSF2_Q6_M00731 TRANSFAC - 76998356 76998363 1.0E-05 ACCACAAA 8 V_MAFK_03_M02776 TRANSFAC + 76994420 76994434 9.0E-06 TATTTTTGCTGTCTT 15 V_RORA1_01_M00156 TRANSFAC - 76998435 76998447 3.0E-06 TTAAGAAGGTCAA 13 V_EVI1_04_M00081 TRANSFAC - 76998402 76998416 3.0E-06 GAATAAGACAGAAAA 15 V_BCL6_01_M01183 TRANSFAC - 76998470 76998485 4.0E-06 TATTTTATTTGTCTTT 16 V_AML3_Q6_M01856 TRANSFAC - 76998357 76998364 1.0E-05 AACCACAA 8 V_HOXA13_02_M01297 TRANSFAC + 76998476 76998484 4.0E-06 AAATAAAAT 9 V_HOXA13_02_M01297 TRANSFAC + 77001374 77001382 7.0E-06 ACATAAAAC 9 V_PROP1_01_M01294 TRANSFAC - 76998753 76998763 5.0E-06 TAATTTGATTC 11 V_OCTAMER_01_M01324 TRANSFAC - 76998766 76998782 3.0E-06 CACGTTTGCATATATTA 17 V_NFAT3_Q3_M01734 TRANSFAC + 76998996 76999005 4.0E-06 TATTTTTCCT 10 V_HNF3_Q6_01_M01012 TRANSFAC - 76998468 76998485 4.0E-06 TATTTTATTTGTCTTTCC 18 V_GKLF_02_M01588 TRANSFAC + 76999658 76999669 5.0E-06 GCCCCACCCAAC 12 V_CMYB_Q5_M01821 TRANSFAC - 76998924 76998934 8.0E-06 CCTAACTGATT 11 V_HOXD13_01_M01404 TRANSFAC + 76998472 76998487 8.0E-06 AGACAAATAAAATAAT 16 V_PSX1_01_M01435 TRANSFAC - 76998732 76998748 3.0E-06 AGCATTTATTAGTTGGT 17 V_REX1_01_M01695 TRANSFAC - 76998973 76998982 7.0E-06 TCAGCCATTG 10 V_ELF4_04_M02850 TRANSFAC + 76999006 76999022 7.0E-06 TTGCCAACAAAAAATAT 17 V_HELIOSA_02_M01004 TRANSFAC - 76998998 76999008 1.0E-05 CAAAGGAAAAA 11 V_EN1_02_M01365 TRANSFAC + 76998732 76998747 6.0E-06 ACCAACTAATAAATGC 16 V_POU3F2_01_M00463 TRANSFAC + 76998474 76998487 1.0E-06 ACAAATAAAATAAT 14 V_ZFP105_03_M02827 TRANSFAC + 76998473 76998487 4.0E-06 GACAAATAAAATAAT 15 V_ZFP105_03_M02827 TRANSFAC + 76998964 76998978 7.0E-06 TCAAAACAACAATGG 15 V_HOXB13_01_M01467 TRANSFAC + 76998472 76998487 6.0E-06 AGACAAATAAAATAAT 16 V_GATA3_05_M02859 TRANSFAC - 76998743 76998764 6.0E-06 CTAATTTGATTCTTTCAGCATT 22 V_GATA3_05_M02859 TRANSFAC - 76998948 76998969 2.0E-06 TTTTGAAGATTCCATCATTCAT 22 V_NFAT_Q6_M00302 TRANSFAC - 76998997 76999008 0.0E+00 CAAAGGAAAAAT 12 V_AML2_01_M01759 TRANSFAC - 76998357 76998364 1.0E-05 AACCACAA 8 V_AP1_Q4_M00188 TRANSFAC + 76998869 76998879 2.0E-06 AGTGACTCAGA 11 V_HNF1B_04_M02266 TRANSFAC + 76998863 76998874 7.0E-06 CTAATAAGTGAC 12 V_IRF3_Q3_M01279 TRANSFAC + 76998995 76999007 0.0E+00 TTATTTTTCCTTT 13 V_EVI1_01_M00078 TRANSFAC + 76998758 76998773 8.0E-06 AAATTAGATAATATAT 16 V_HNF3_Q6_M00791 TRANSFAC + 76998470 76998482 4.0E-06 AAAGACAAATAAA 13 V_STAT5A_02_M00460 TRANSFAC + 76994289 76994312 3.0E-06 TGCCTGGAAGAGCAATTCCAAAAA 24 V_PAX2_01_M00098 TRANSFAC + 76998941 76998959 6.0E-06 TTCAATTATGAATGATGGA 19 V_PAX2_01_M00098 TRANSFAC - 76998942 76998960 5.0E-06 TTCCATCATTCATAATTGA 19 V_SOX12_04_M02900 TRANSFAC + 76998342 76998357 6.0E-06 AAGGTGACAAAGCATT 16 V_RREB1_01_M00257 TRANSFAC + 76999659 76999672 6.0E-06 CCCCACCCAACCAA 14 V_EBF1_01_M02267 TRANSFAC + 76994461 76994470 5.0E-06 ACTCAAGGGA 10 V_ISGF3G_03_M02771 TRANSFAC + 76999640 76999654 9.0E-06 CAGAATAAAAACTAA 15 V_POU6F1_01_M00465 TRANSFAC + 76998939 76998949 1.0E-05 GCTTCAATTAT 11 V_IRX3_01_M01318 TRANSFAC - 77001394 77001410 8.0E-06 ACCTAACATGTAGTCTA 17 V_IRX3_01_M01318 TRANSFAC + 77001395 77001411 9.0E-06 AGACTACATGTTAGGTC 17 V_HOXD9_Q2_M01834 TRANSFAC + 76998474 76998483 8.0E-06 ACAAATAAAA 10 V_CIZ_01_M00734 TRANSFAC + 76999013 76999021 6.0E-06 CAAAAAATA 9 V_AP1FJ_Q2_M00172 TRANSFAC + 76998869 76998879 1.0E-06 AGTGACTCAGA 11 V_FOXL1_02_M02857 TRANSFAC + 76998961 76998976 2.0E-06 TCTTCAAAACAACAAT 16 V_LUN1_01_M00480 TRANSFAC - 76995021 76995037 7.0E-06 TCCCAGCTACTTAGAAG 17 V_HDX_01_M01333 TRANSFAC + 76999564 76999580 1.0E-05 CTGACAAAATCATAGAC 17 V_CPHX_01_M01478 TRANSFAC + 76998747 76998760 7.0E-06 CTGAAAGAATCAAA 14 V_ZBTB4_04_M02929 TRANSFAC + 76999558 76999573 1.0E-05 AAACCACTGACAAAAT 16 V_DMRT7_01_M01151 TRANSFAC - 76998979 76998992 7.0E-06 TTGTCACATTTCAG 14 V_FOX_Q2_M00809 TRANSFAC - 76998471 76998483 6.0E-06 TTTTATTTGTCTT 13 V_PLZF_02_M01075 TRANSFAC - 76999010 76999038 5.0E-06 TTGTTCTATCTCTGAAATATTTTTTGTTG 29 V_SOX2_01_M02246 TRANSFAC - 76998964 76998978 9.0E-06 CCATTGTTGTTTTGA 15 V_NUR77_Q5_M01217 TRANSFAC + 76998435 76998444 9.0E-06 TTGACCTTCT 10 V_PIT1_Q6_M00802 TRANSFAC - 76998937 76998954 1.0E-06 CATTCATAATTGAAGCTA 18 V_SRY_05_M02917 TRANSFAC + 76998965 76998981 5.0E-06 CAAAACAACAATGGCTG 17 V_NFE2L2_01_M02263 TRANSFAC + 76998345 76998355 2.0E-06 GTGACAAAGCA 11 V_GATA6_04_M02757 TRANSFAC + 76998758 76998774 1.0E-05 AAATTAGATAATATATG 17 V_TCF11MAFG_01_M00284 TRANSFAC + 76998340 76998361 1.0E-06 GGAAGGTGACAAAGCATTTGTG 22 V_SOX5_04_M02910 TRANSFAC - 76998939 76998953 7.0E-06 ATTCATAATTGAAGC 15 V_TCF3_05_M02920 TRANSFAC - 76998992 76999006 5.0E-06 AAGGAAAAATAAACT 15 V_AR_Q6_M00962 TRANSFAC - 76998420 76998428 6.0E-06 TGAGCACAA 9 V_EVI1_03_M00080 TRANSFAC + 76998763 76998773 8.0E-06 AGATAATATAT 11 V_RORA2_01_M00157 TRANSFAC - 76998435 76998447 1.0E-05 TTAAGAAGGTCAA 13 V_SOX14_03_M02798 TRANSFAC + 76998787 76998802 6.0E-06 TCAAATTGCAATATGC 16 V_NANOG_02_M01247 TRANSFAC + 76998964 76998983 4.0E-06 TCAAAACAACAATGGCTGAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.