Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

R3HCC1


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
203069 R3H domain and coiled-coil containing 1 chr8 +23140611 - 23146111 23145611

Transcription Factor Binding Sites

 
Download all TFBS in the R3HCC1 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
POU2F1_POU_DBD_dimeric_14_1 SELEX + 23145441 23145454 2.0E-06 CATGAATATGAAAG 14
POU2F1_POU_DBD_dimeric_14_1 SELEX - 23145441 23145454 4.0E-06 CTTTCATATTCATG 14
SPIC_ETS_full_monomeric_14_1 SELEX - 23145097 23145110 1.0E-06 ATAAAGAGGAAGGA 14
RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 23145282 23145299 6.0E-06 TAAGATCAATTAAGTTCA 18
SOX9_HMG_full_dimeric_17_3 SELEX + 23145447 23145463 5.0E-06 TATGAAAGCTAGTCGTG 17
ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 23145282 23145298 7.0E-06 AAGATCAATTAAGTTCA 17
RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 23145282 23145298 1.0E-06 AAGATCAATTAAGTTCA 17
Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 23145282 23145299 2.0E-06 TAAGATCAATTAAGTTCA 18
SPIB_ETS_DBD_monomeric_14_1 SELEX - 23145097 23145110 4.0E-06 ATAAAGAGGAAGGA 14
RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 23144957 23144975 7.0E-06 CTTGTGGGTTACTGGGTTG 19
RUNX3_RUNX_full_monomeric_10_1 SELEX - 23145206 23145215 3.0E-06 AAACCGCAAT 10
RUNX3_RUNX_full_monomeric_10_1 SELEX + 23145230 23145239 3.0E-06 AAACCACAAT 10
RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 23145207 23145215 3.0E-06 AAACCGCAA 9
RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 23145230 23145238 8.0E-06 AAACCACAA 9
SOX8_HMG_full_dimeric_13_1 SELEX + 23145448 23145460 1.0E-05 ATGAAAGCTAGTC 13
RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 23145282 23145298 5.0E-06 AAGATCAATTAAGTTCA 17
Pou2f2_POU_DBD_dimeric_14_1 SELEX + 23145441 23145454 4.0E-06 CATGAATATGAAAG 14
POU2F3_POU_DBD_dimeric_12_1 SELEX + 23145442 23145453 1.0E-06 ATGAATATGAAA 12
FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX - 23145456 23145469 9.0E-06 GAGTGACACGACTA 14
RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 23145282 23145298 2.0E-06 AAGATCAATTAAGTTCA 17
SOX14_HMG_DBD_dimeric_12_1 SELEX + 23145235 23145246 7.0E-06 ACAATTACTTTG 12
POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 23145442 23145453 1.0E-06 ATGAATATGAAA 12
POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 23145442 23145453 8.0E-06 TTTCATATTCAT 12
Meis2_MEIS_DBD_dimeric_12_1 SELEX - 23146023 23146034 1.0E-05 TGACAGGTGGGA 12
Sox3_HMG_DBD_dimeric_17_3 SELEX + 23145447 23145463 7.0E-06 TATGAAAGCTAGTCGTG 17
SPI1_ETS_full_monomeric_14_1 SELEX - 23145097 23145110 5.0E-06 ATAAAGAGGAAGGA 14
POU3F3_POU_DBD_dimeric_12_1 SELEX + 23145442 23145453 1.0E-06 ATGAATATGAAA 12
POU3F3_POU_DBD_dimeric_12_1 SELEX - 23145442 23145453 6.0E-06 TTTCATATTCAT 12
ELF5_MA0136.1 JASPAR + 23145093 23145101 9.0E-06 AACTTCCTT 9
HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 23145285 23145295 6.0E-06 ATCAATTAAGT 11
V_MINI20_B_M00324 TRANSFAC - 23146047 23146067 1.0E-06 GGAAGACACCATCCAAGCAGA 21
V_AREB6_01_M00412 TRANSFAC + 23145413 23145425 3.0E-06 ATTTCACCTGTCT 13
V_SPI1_01_M01203 TRANSFAC - 23145094 23145110 5.0E-06 ATAAAGAGGAAGGAAGT 17
V_MSX3_01_M01341 TRANSFAC - 23145284 23145299 2.0E-06 TAAGATCAATTAAGTT 16
V_TCF3_01_M01594 TRANSFAC - 23145322 23145334 2.0E-06 CTTTTCTTTTTTT 13
V_TCF3_01_M01594 TRANSFAC - 23145443 23145455 6.0E-06 GCTTTCATATTCA 13
V_EBF_Q6_M00977 TRANSFAC - 23149333 23149343 1.0E-06 GTCCCTTGAGA 11
V_AML3_Q6_M01856 TRANSFAC + 23145231 23145238 1.0E-05 AACCACAA 8
V_ISL2_01_M01328 TRANSFAC - 23145284 23145299 1.0E-06 TAAGATCAATTAAGTT 16
V_IRF_Q6_01_M00972 TRANSFAC + 23145323 23145333 6.0E-06 AAAAAAGAAAA 11
V_AP2_Q6_01_M00915 TRANSFAC + 23145552 23145564 6.0E-06 CCTCCCCCAGGCC 13
V_MAF_Q6_M00648 TRANSFAC - 23145089 23145104 6.0E-06 AGGAAGGAAGTTTCTG 16
V_PRX2_Q2_M02115 TRANSFAC + 23145365 23145373 7.0E-06 TCAAAGTAA 9
V_PU1_Q4_M01172 TRANSFAC + 23145091 23145109 3.0E-06 GAAACTTCCTTCCTCTTTA 19
V_HMGA2_01_M01300 TRANSFAC + 23145204 23145218 6.0E-06 TAATTGCGGTTTTTT 15
V_SOX7_03_M02807 TRANSFAC - 23145281 23145302 6.0E-06 TTGTAAGATCAATTAAGTTCAA 22
V_CART1_01_M00416 TRANSFAC + 23145285 23145302 9.0E-06 ACTTAATTGATCTTACAA 18
V_HNF1_Q6_M00790 TRANSFAC + 23145214 23145231 1.0E-06 TTTTTACTTATTAGCAAA 18
V_SOX8_04_M02912 TRANSFAC - 23145436 23145449 3.0E-06 ATATTCATGGCAAA 14
V_NKX61_01_M00424 TRANSFAC + 23145284 23145296 9.0E-06 AACTTAATTGATC 13
V_AML2_01_M01759 TRANSFAC + 23145231 23145238 1.0E-05 AACCACAA 8
V_NKX25_02_M00241 TRANSFAC + 23145286 23145293 7.0E-06 CTTAATTG 8
V_LEF1_03_M02878 TRANSFAC - 23145284 23145299 1.0E-06 TAAGATCAATTAAGTT 16
V_HNF1_Q6_01_M01011 TRANSFAC - 23145212 23145232 4.0E-06 TTTTGCTAATAAGTAAAAAAC 21
V_SZF11_01_M01109 TRANSFAC - 23146026 23146040 3.0E-06 CCAGGGTGACAGGTG 15
V_IRF3_06_M02871 TRANSFAC - 23145011 23145024 4.0E-06 GTAAAAAGGTCTAA 14
V_TAL1BETAE47_01_M00065 TRANSFAC - 23145384 23145399 5.0E-06 TTGCACAGATGGTACA 16
V_MUSCLE_INI_B_M00321 TRANSFAC - 23145561 23145581 8.0E-06 ACGCAGCGCCACCGCGCGGCC 21
V_SPIB_01_M01204 TRANSFAC - 23145094 23145110 4.0E-06 ATAAAGAGGAAGGAAGT 17
V_RREB1_01_M00257 TRANSFAC - 23148146 23148159 4.0E-06 ACCCAAATCCACAC 14
V_NKX3A_01_M00451 TRANSFAC - 23145215 23145226 2.0E-06 TAATAAGTAAAA 12
V_SOX17_04_M02904 TRANSFAC - 23145437 23145453 7.0E-06 TTTCATATTCATGGCAA 17
V_S8_01_M00099 TRANSFAC - 23145284 23145299 6.0E-06 TAAGATCAATTAAGTT 16
V_MINI19_B_M00323 TRANSFAC - 23146047 23146067 3.0E-06 GGAAGACACCATCCAAGCAGA 21
V_MTF1_06_M02882 TRANSFAC - 23145213 23145226 2.0E-06 TAATAAGTAAAAAA 14
V_GATA1_01_M00075 TRANSFAC + 23144941 23144950 3.0E-06 CGTGATAGTG 10
V_MYOD_Q6_01_M00929 TRANSFAC - 23145411 23145428 8.0E-06 CCCAGACAGGTGAAATAA 18
V_AREB6_02_M00413 TRANSFAC + 23145414 23145425 6.0E-06 TTTCACCTGTCT 12
V_BARHL1_01_M01332 TRANSFAC - 23145284 23145299 2.0E-06 TAAGATCAATTAAGTT 16
V_TAL1ALPHAE47_01_M00066 TRANSFAC - 23145384 23145399 4.0E-06 TTGCACAGATGGTACA 16
V_HEN1_02_M00058 TRANSFAC + 23145487 23145508 1.0E-06 GTTGGTGGCAGGTGCGCCCCCT 22
V_CBF_01_M01079 TRANSFAC + 23145203 23145218 6.0E-06 GTAATTGCGGTTTTTT 16
V_TCF7L2_04_M02922 TRANSFAC - 23145284 23145299 5.0E-06 TAAGATCAATTAAGTT 16
V_BBX_03_M02739 TRANSFAC - 23145284 23145298 5.0E-06 AAGATCAATTAAGTT 15
V_TBX22_01_M01195 TRANSFAC + 23145002 23145020 5.0E-06 TGGTGTGAATTAGACCTTT 19
V_SRF_06_M02916 TRANSFAC + 23145315 23145331 1.0E-05 ATGGAAGAAAAAAAGAA 17
V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 23145230 23145237 1.0E-05 TGTGGTTT 8
V_EFC_Q6_M00626 TRANSFAC + 23145237 23145250 9.0E-06 AATTACTTTGCACC 14
V_BARHL2_01_M01446 TRANSFAC - 23145284 23145299 0.0E+00 TAAGATCAATTAAGTT 16
V_TFE_Q6_M01029 TRANSFAC + 23146153 23146160 1.0E-05 TCATGTGA 8
V_ELF5_04_M02241 TRANSFAC + 23145093 23145101 9.0E-06 AACTTCCTT 9
V_CP2_01_M00072 TRANSFAC + 23144954 23144964 6.0E-06 GCCCAACCCAG 11
V_BARX1_01_M01340 TRANSFAC + 23145200 23145215 6.0E-06 AAAGTAATTGCGGTTT 16
V_COUP_DR1_Q6_M00765 TRANSFAC + 23145863 23145875 4.0E-06 TGACCCCTGACTT 13
V_MIF1_01_M00279 TRANSFAC - 23145235 23145252 9.0E-06 TTGGTGCAAAGTAATTGT 18
V_SMAD1_01_M01590 TRANSFAC + 23145324 23145335 1.0E-06 AAAAAGAAAAGA 12
V_NANOG_02_M01247 TRANSFAC + 23145320 23145339 3.0E-06 AGAAAAAAAGAAAAGAGCCC 20
V_HSF1_Q6_01_M02017 TRANSFAC - 23145375 23145388 3.0E-06 GTACATTCTAGAGT 14
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL