Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

APOBEC3F Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 200316 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F chr22 + 39431672 - 39437172 39436672 Transcription Factor Binding Sites   Download all TFBS in the APOBEC3F promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints IRF7_IRF_DBD_dimeric_14_1 SELEX + 39436907 39436920 2.0E-06 CAGAAAGTGAAACC 14 IRF8_IRF_full_dimeric_14_1 SELEX + 39436907 39436920 2.0E-06 CAGAAAGTGAAACC 14 TCF7L1_HMG_full_monomeric_12_1 SELEX + 39433191 39433202 5.0E-06 TAAGATAAAAGA 12 IRF1_MA0050.1 JASPAR + 39436909 39436920 0.0E+00 GAAAGTGAAACC 12 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 39433191 39433202 7.0E-06 TAAGATAAAAGA 12 IRF9_IRF_full_trimeric_15_1 SELEX + 39436906 39436920 6.0E-06 GCAGAAAGTGAAACC 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 39436662 39436676 2.0E-06 GGAAAGAGAAAGTCA 15 IRF4_IRF_full_dimeric_15_1 SELEX + 39436907 39436921 9.0E-06 CAGAAAGTGAAACCC 15 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 39433290 39433305 5.0E-06 AGGTGCAATTAGTTCA 16 IRF3_IRF_full_trimeric_21_1 SELEX - 39436663 39436683 2.0E-06 TGCAAAGGGAAAGAGAAAGTC 21 IRF2_MA0051.1 JASPAR - 39436659 39436676 3.0E-06 GGAAAGAGAAAGTCATTG 18 IRF2_MA0051.1 JASPAR + 39436908 39436925 9.0E-06 AGAAAGTGAAACCCTGGT 18 V_ZFP187_03_M02830 TRANSFAC - 39433295 39433308 8.0E-06 AGATGAACTAATTG 14 V_AR_Q6_01_M01996 TRANSFAC - 39432411 39432425 3.0E-06 CTACTTTCTGTTCTG 15 V_IRF_Q6_01_M00972 TRANSFAC - 39436665 39436675 3.0E-06 GAAAGAGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC + 39436909 39436919 1.0E-06 GAAAGTGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC - 39436662 39436677 0.0E+00 GGGAAAGAGAAAGTCA 16 V_IRF2_Q6_M01882 TRANSFAC - 39436668 39436683 8.0E-06 TGCAAAGGGAAAGAGA 16 V_IRF2_Q6_M01882 TRANSFAC + 39436907 39436922 5.0E-06 CAGAAAGTGAAACCCT 16 V_IRF3_05_M02767 TRANSFAC + 39433171 39433184 6.0E-06 TAGAAAGGAAACGT 14 V_DLX2_01_M01468 TRANSFAC + 39433291 39433306 3.0E-06 GGTGCAATTAGTTCAT 16 V_E2A_Q2_M00804 TRANSFAC + 39437188 39437201 3.0E-06 CCACCTGCCCCAGC 14 V_SOX7_03_M02807 TRANSFAC + 39433244 39433265 4.0E-06 CCTTAGAGACAATAGATGACAA 22 V_IRF3_Q3_M01279 TRANSFAC + 39436668 39436680 1.0E-06 TCTCTTTCCCTTT 13 V_IRF_Q6_M00772 TRANSFAC - 39432412 39432426 2.0E-06 TCTACTTTCTGTTCT 15 V_IRF_Q6_M00772 TRANSFAC - 39436909 39436923 2.0E-06 CAGGGTTTCACTTTC 15 V_TATA_C_M00216 TRANSFAC + 39433282 39433291 5.0E-06 CCTTTAAAAG 10 V_ISRE_01_M00258 TRANSFAC + 39436663 39436677 7.0E-06 GACTTTCTCTTTCCC 15 V_ISRE_01_M00258 TRANSFAC - 39436907 39436921 1.0E-06 GGGTTTCACTTTCTG 15 V_TCF7_03_M02817 TRANSFAC - 39433216 39433232 7.0E-06 GAGACTTCAAAAGAACC 17 V_ICSBP_Q6_M00699 TRANSFAC + 39432413 39432424 6.0E-06 GAACAGAAAGTA 12 V_GR_Q6_02_M01836 TRANSFAC - 39432410 39432422 4.0E-06 CTTTCTGTTCTGC 13 V_MYOD_Q6_01_M00929 TRANSFAC - 39437183 39437200 0.0E+00 CTGGGGCAGGTGGGGAAG 18 V_IRF1_Q6_01_M01881 TRANSFAC + 39436663 39436676 3.0E-06 GACTTTCTCTTTCC 14 V_IRF1_Q6_01_M01881 TRANSFAC - 39436908 39436921 2.0E-06 GGGTTTCACTTTCT 14 V_SOX8_03_M02808 TRANSFAC - 39433246 39433262 1.0E-05 TCATCTATTGTCTCTAA 17 V_MOX1_01_M01443 TRANSFAC + 39433291 39433306 8.0E-06 GGTGCAATTAGTTCAT 16 V_BSX_01_M01442 TRANSFAC + 39433291 39433306 4.0E-06 GGTGCAATTAGTTCAT 16 V_SRY_05_M02917 TRANSFAC + 39433245 39433261 2.0E-06 CTTAGAGACAATAGATG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.