Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ELF3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 1999 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) chr1 + 201974689 - 201980189 201979689 ELF3_ETS_DBD_monomeric_12_1 ELF3_ETS_full_monomeric_13_1 V_ESE1_01_M01977 V_ESE1_Q3_M01214 V_ESE1_02_M02055 Transcription Factor Binding Sites   Download all TFBS in the ELF3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 201978772 201978789 8.0E-06 TTGGTAAATATATTAATA 18 CTCF_MA0139.1 JASPAR + 201978839 201978857 0.0E+00 TGACCACTAGAGGGCAGCA 19 FOXO4_forkhead_DBD_dimeric_14_1 SELEX + 201978775 201978788 7.0E-06 GTAAATATATTAAT 14 NF-kappaB_MA0061.1 JASPAR - 201979627 201979636 4.0E-06 GGGGATTTCC 10 POU2F1_POU_DBD_dimeric_14_1 SELEX + 201979580 201979593 0.0E+00 ACTGAATATGCAAA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 201979580 201979593 3.0E-06 TTTGCATATTCAGT 14 Tp53_p53l_DBD_dimeric_18_1 SELEX - 201979338 201979355 3.0E-06 GCAAGTGAGGGAACATGA 18 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 201975264 201975276 1.0E-05 AAAATTAAGTTAC 13 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 201979719 201979730 4.0E-06 GCTCTAAATAGA 12 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 201979586 201979594 2.0E-06 TATGCAAAT 9 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 201977454 201977465 9.0E-06 GGTTCTCCCACA 12 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 201977499 201977509 4.0E-06 TGCCTCAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 201977499 201977509 1.0E-06 AGCCTGAGGCA 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 201977552 201977562 1.0E-05 AGCCCCAGGCT 11 POU2F3_POU_DBD_monomeric_9_1 SELEX + 201979586 201979594 2.0E-06 TATGCAAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX + 201979584 201979597 0.0E+00 AATATGCAAATCAC 14 STAT1_MA0137.2 JASPAR - 201979224 201979238 6.0E-06 TTTTTCCCAGAACAC 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 201979719 201979730 7.0E-06 GCTCTAAATAGA 12 POU2F2_POU_DBD_monomeric_11_1 SELEX + 201979585 201979595 1.0E-06 ATATGCAAATC 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 201977499 201977509 2.0E-06 TGCCTCAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 201977499 201977509 3.0E-06 AGCCTGAGGCA 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 201977552 201977562 9.0E-06 AGCCCCAGGCT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 201979586 201979594 2.0E-06 TATGCAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 201979586 201979594 2.0E-06 TATGCAAAT 9 Pax4_MA0068.1 JASPAR + 201978777 201978806 4.0E-06 AAATATATTAATACTATGCATTCCCTCTTC 30 REL_MA0101.1 JASPAR - 201979627 201979636 1.0E-06 GGGGATTTCC 10 PROP1_homeodomain_full_dimeric_11_1 SELEX - 201975265 201975275 1.0E-05 TAACTTAATTT 11 POU3F3_POU_DBD_monomeric_13_1 SELEX + 201979584 201979596 0.0E+00 AATATGCAAATCA 13 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 201975324 201975340 9.0E-06 TTGTTCAGGAAAGGTCA 17 RELA_MA0107.1 JASPAR - 201979627 201979636 2.0E-06 GGGGATTTCC 10 HSF4_HSF_DBD_trimeric_13_1 SELEX - 201978858 201978870 6.0E-06 TTCCAGTACCTTC 13 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 201979580 201979593 0.0E+00 ACTGAATATGCAAA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 201979580 201979593 2.0E-06 TTTGCATATTCAGT 14 HIC2_C2H2_DBD_monomeric_9_1 SELEX + 201979432 201979440 1.0E-05 ATGCCCACC 9 HIC2_C2H2_DBD_monomeric_9_1 SELEX - 201984232 201984240 4.0E-06 ATGCCCACT 9 POU2F3_POU_DBD_dimeric_12_1 SELEX + 201979581 201979592 1.0E-06 CTGAATATGCAA 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 201979581 201979592 8.0E-06 TTGCATATTCAG 12 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 201975264 201975276 8.0E-06 GTAACTTAATTTT 13 PHOX2B_homeodomain_full_dimeric_11_1 SELEX - 201975265 201975275 3.0E-06 TAACTTAATTT 11 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 201975264 201975276 9.0E-06 AAAATTAAGTTAC 13 SPDEF_ETS_full_putative-multimer_15_1 SELEX - 201979561 201979575 1.0E-05 CTTGGCCCGGATCTT 15 SOX9_HMG_full_dimeric_16_3 SELEX - 201975359 201975374 5.0E-06 AGGAAAATACTGTCAT 16 CTCF_C2H2_full_monomeric_17_1 SELEX - 201978840 201978856 4.0E-06 GCTGCCCTCTAGTGGTC 17 Lhx3_MA0135.1 JASPAR - 201975286 201975298 5.0E-06 AAATTTAATAGTC 13 Gata1_MA0035.2 JASPAR - 201977286 201977296 6.0E-06 TGAGATAAGGA 11 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 201978785 201978801 9.0E-06 TAATACTATGCATTCCC 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 201979283 201979299 9.0E-06 AAATTCCAGAGATTCAG 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 201975265 201975275 4.0E-06 TAACTTAATTT 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 201975264 201975276 4.0E-06 GTAACTTAATTTT 13 POU3F1_POU_DBD_monomeric_12_1 SELEX + 201979585 201979596 1.0E-06 ATATGCAAATCA 12 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 201975264 201975276 6.0E-06 GTAACTTAATTTT 13 FEV_MA0156.1 JASPAR + 201979625 201979632 1.0E-05 CAGGAAAT 8 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 201977499 201977509 2.0E-06 TGCCTCAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 201977499 201977509 1.0E-06 AGCCTGAGGCA 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 201977552 201977562 8.0E-06 AGCCCCAGGCT 11 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 201979581 201979592 1.0E-06 CTGAATATGCAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 201979581 201979592 5.0E-06 TTGCATATTCAG 12 HNF4A_MA0114.1 JASPAR + 201979614 201979626 6.0E-06 AGTCTAAAGGCCA 13 POU2F1_POU_DBD_monomeric_12_1 SELEX + 201979584 201979595 0.0E+00 AATATGCAAATC 12 TEAD1_TEA_full_dimeric_17_1 SELEX + 201978785 201978801 5.0E-06 TAATACTATGCATTCCC 17 TEAD1_TEA_full_dimeric_17_1 SELEX - 201979283 201979299 3.0E-06 AAATTCCAGAGATTCAG 17 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX - 201975265 201975275 3.0E-06 TAACTTAATTT 11 FOXO3_forkhead_full_dimeric_14_1 SELEX + 201978775 201978788 8.0E-06 GTAAATATATTAAT 14 FOXO3_forkhead_full_dimeric_14_1 SELEX - 201978775 201978788 7.0E-06 ATTAATATATTTAC 14 REST_MA0138.2 JASPAR - 201979204 201979224 8.0E-06 CCCAGGACTCTGGCCAGGGGC 21 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 201984143 201984154 7.0E-06 TTTCCCTACACT 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 201979585 201979596 1.0E-06 ATATGCAAATCA 12 FOXO6_forkhead_DBD_dimeric_14_1 SELEX + 201978775 201978788 7.0E-06 GTAAATATATTAAT 14 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 201978775 201978788 5.0E-06 ATTAATATATTTAC 14 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 201977499 201977509 3.0E-06 TGCCTCAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 201977499 201977509 2.0E-06 AGCCTGAGGCA 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 201977552 201977562 6.0E-06 AGCCCCAGGCT 11 TEAD1_MA0090.1 JASPAR + 201977462 201977473 1.0E-06 CACATTCCTGGG 12 V_NFKAPPAB65_01_M00052 TRANSFAC - 201979627 201979636 3.0E-06 GGGGATTTCC 10 V_STAT5A_Q6_M01890 TRANSFAC - 201979227 201979239 9.0E-06 GTTTTTCCCAGAA 13 V_DBX1_01_M01483 TRANSFAC - 201975285 201975301 4.0E-06 AAGAAATTTAATAGTCA 17 V_DBX1_01_M01483 TRANSFAC + 201978777 201978793 1.0E-06 AAATATATTAATACTAT 17 V_DEC2_Q2_M01843 TRANSFAC - 201977425 201977434 9.0E-06 GCTCACGTGC 10 V_MEQCJUN_02_M02048 TRANSFAC - 201978812 201978822 9.0E-06 GGTCACGTCAT 11 V_AR_02_M00953 TRANSFAC + 201979210 201979236 8.0E-06 GGCCAGAGTCCTGGGTGTTCTGGGAAA 27 V_E2F4_Q6_M02090 TRANSFAC - 201979786 201979795 1.0E-05 GCGGGAGAGA 10 V_STAT3STAT3_Q3_M01220 TRANSFAC + 201979226 201979239 3.0E-06 GTTCTGGGAAAAAC 14 V_RELBP52_01_M01239 TRANSFAC - 201979627 201979636 1.0E-06 GGGGATTTCC 10 V_PROP1_01_M01294 TRANSFAC - 201978776 201978786 9.0E-06 TAATATATTTA 11 V_OCT1_Q5_01_M00930 TRANSFAC - 201979586 201979596 0.0E+00 TGATTTGCATA 11 V_DR4_Q2_M00965 TRANSFAC - 201975324 201975340 5.0E-06 TGACCTTTCCTGAACAA 17 V_OCT1_01_M00135 TRANSFAC + 201979581 201979599 0.0E+00 CTGAATATGCAAATCACCT 19 V_POU2F3_01_M01476 TRANSFAC + 201979583 201979598 2.0E-06 GAATATGCAAATCACC 16 V_HNF3_Q6_01_M01012 TRANSFAC + 201975316 201975333 8.0E-06 CACTGTGTTTGTTCAGGA 18 V_GATA_C_M00203 TRANSFAC - 201977284 201977294 1.0E-06 AGATAAGGAAT 11 V_P50RELAP65_Q5_01_M01224 TRANSFAC - 201977535 201977546 7.0E-06 GGATTTTCCCCA 12 V_HNF4A_03_M02220 TRANSFAC + 201979614 201979626 6.0E-06 AGTCTAAAGGCCA 13 V_OCT_C_M00210 TRANSFAC - 201979585 201979597 1.0E-06 GTGATTTGCATAT 13 V_TR4_Q2_M01725 TRANSFAC - 201975332 201975342 8.0E-06 AGTGACCTTTC 11 V_SP1_02_M01303 TRANSFAC - 201977199 201977209 5.0E-06 GGGGTGGGGAG 11 V_COUPTF_Q6_M01036 TRANSFAC - 201979609 201979631 2.0E-06 TTTCCTGGCCTTTAGACTGGGCT 23 V_GM497_04_M02864 TRANSFAC - 201977486 201977501 7.0E-06 GCAGGCACACCCTCCA 16 V_OCT2_02_M01761 TRANSFAC + 201979582 201979591 1.0E-06 TGAATATGCA 10 V_OCT2_02_M01761 TRANSFAC - 201979582 201979591 2.0E-06 TGCATATTCA 10 V_TAL1_GATA1_01_M02243 TRANSFAC - 201977257 201977274 0.0E+00 CTGGCAGCTTGAGATAAG 18 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 201977225 201977239 3.0E-06 TGAGGTCAGTGCCTT 15 V_TRF1_01_M01237 TRANSFAC - 201979237 201979251 7.0E-06 CTAGGTTTAGGGGTT 15 V_ZNF219_01_M01122 TRANSFAC + 201977204 201977215 7.0E-06 CACCCCCATCCC 12 V_POU3F2_01_M00463 TRANSFAC + 201978775 201978788 3.0E-06 GTAAATATATTAAT 14 V_HNF3G_Q4_M02015 TRANSFAC + 201975321 201975328 7.0E-06 TGTTTGTT 8 V_OCT1_02_M00136 TRANSFAC + 201979581 201979595 1.0E-06 CTGAATATGCAAATC 15 V_HNF1_Q6_M00790 TRANSFAC - 201979512 201979529 4.0E-06 GGTTTAATGATTGTCAGA 18 V_NFAT_Q6_M00302 TRANSFAC + 201978863 201978874 6.0E-06 TACTGGAAAACT 12 V_XFD3_01_M00269 TRANSFAC + 201978772 201978785 4.0E-06 TTGGTAAATATATT 14 V_CREL_01_M00053 TRANSFAC - 201979627 201979636 1.0E-06 GGGGATTTCC 10 V_ZBED6_01_M01598 TRANSFAC + 201977557 201977568 3.0E-06 CAGGCTCTCCTG 12 V_E12_Q6_M00693 TRANSFAC - 201979454 201979464 7.0E-06 GGCAGGTGGCG 11 V_HOXA3_07_M02869 TRANSFAC + 201978776 201978789 8.0E-06 TAAATATATTAATA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 201977197 201977210 1.0E-05 GGGGGTGGGGAGAA 14 V_HNF3_Q6_M00791 TRANSFAC - 201975319 201975331 2.0E-06 CTGAACAAACACA 13 V_OCT1_05_M00161 TRANSFAC - 201979584 201979597 0.0E+00 GTGATTTGCATATT 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 201975321 201975331 5.0E-06 TGTTTGTTCAG 11 V_HNF1_Q6_01_M01011 TRANSFAC + 201975256 201975276 4.0E-06 TTCAAGCAAAAATTAAGTTAC 21 V_GR_01_M00955 TRANSFAC + 201979210 201979236 5.0E-06 GGCCAGAGTCCTGGGTGTTCTGGGAAA 27 Tal1_Gata1_MA0140.1 JASPAR - 201977257 201977274 0.0E+00 CTGGCAGCTTGAGATAAG 18 V_NFKAPPAB50_01_M00051 TRANSFAC - 201979627 201979636 6.0E-06 GGGGATTTCC 10 V_GATA1_09_M02254 TRANSFAC - 201977286 201977296 6.0E-06 TGAGATAAGGA 11 V_TEF_01_M01305 TRANSFAC + 201977462 201977473 1.0E-06 CACATTCCTGGG 12 V_OCAB_Q6_M02113 TRANSFAC + 201979585 201979595 0.0E+00 ATATGCAAATC 11 V_MEF2_Q6_01_M00941 TRANSFAC + 201979716 201979727 6.0E-06 GGCTCTATTTAG 12 V_CDC5_01_M00478 TRANSFAC - 201978779 201978790 1.0E-05 GTATTAATATAT 12 V_NCX_02_M01420 TRANSFAC + 201978777 201978793 1.0E-06 AAATATATTAATACTAT 17 V_STAT4_Q5_M02117 TRANSFAC + 201979227 201979236 7.0E-06 TTCTGGGAAA 10 V_TBP_06_M02814 TRANSFAC + 201978774 201978789 2.0E-06 GGTAAATATATTAATA 16 V_CTCF_02_M01259 TRANSFAC + 201978836 201978855 0.0E+00 TTCTGACCACTAGAGGGCAG 20 V_STAT3_03_M01595 TRANSFAC - 201979538 201979553 6.0E-06 AGTGCTGGGAAATCAG 16 V_NR1B1_Q6_M02110 TRANSFAC + 201975333 201975342 6.0E-06 AAAGGTCACT 10 V_CTCF_01_M01200 TRANSFAC + 201978838 201978857 0.0E+00 CTGACCACTAGAGGGCAGCA 20 V_OCT1_B_M00342 TRANSFAC + 201979586 201979595 1.0E-06 TATGCAAATC 10 V_AP1_Q2_01_M00924 TRANSFAC - 201984195 201984206 5.0E-06 TGACTCACACTT 12 V_OCT_Q6_M00795 TRANSFAC - 201979586 201979596 0.0E+00 TGATTTGCATA 11 V_HOXD9_Q2_M01834 TRANSFAC + 201979518 201979527 5.0E-06 AATCATTAAA 10 V_ALPHACP1_01_M00687 TRANSFAC + 201979639 201979649 1.0E-06 CATCCAATGAG 11 V_IPF1_05_M01255 TRANSFAC + 201979518 201979529 3.0E-06 AATCATTAAACC 12 V_SMAD4_04_M02898 TRANSFAC + 201977375 201977391 2.0E-06 TTCACCCCGCCATCCCG 17 V_OCT2_01_M01368 TRANSFAC + 201979583 201979598 2.0E-06 GAATATGCAAATCACC 16 V_OCT1_Q6_M00195 TRANSFAC + 201979583 201979597 0.0E+00 GAATATGCAAATCAC 15 V_TEF1_Q6_03_M01817 TRANSFAC - 201977463 201977471 9.0E-06 CAGGAATGT 9 V_XBP1_01_M00251 TRANSFAC + 201978809 201978825 6.0E-06 TGAATGACGTGACCCAG 17 V_VDR_Q6_M00961 TRANSFAC + 201978878 201978889 6.0E-06 CCGAGTGAACCA 12 V_STAT1STAT1_Q3_M01212 TRANSFAC - 201979225 201979237 2.0E-06 TTTTCCCAGAACA 13 V_REST_02_M02256 TRANSFAC - 201979204 201979224 8.0E-06 CCCAGGACTCTGGCCAGGGGC 21 V_STAT6_02_M00500 TRANSFAC - 201979626 201979633 1.0E-05 GATTTCCT 8 V_ZFP281_01_M01597 TRANSFAC - 201977201 201977211 1.0E-06 TGGGGGTGGGG 11 V_MEF3_B_M00319 TRANSFAC + 201979655 201979667 9.0E-06 AGCTCAGGTTACT 13 V_BBX_03_M02739 TRANSFAC - 201978801 201978815 8.0E-06 TCATTCAAAGAAGAG 15 V_SRF_02_M01257 TRANSFAC + 201977319 201977336 8.0E-06 GCCCCAAGAAGGCAAGGG 18 V_RARA_03_M02787 TRANSFAC + 201975329 201975344 1.0E-05 CAGGAAAGGTCACTGG 16 V_NFKAPPAB_01_M00054 TRANSFAC - 201979627 201979636 4.0E-06 GGGGATTTCC 10 V_ZFP281_04_M02831 TRANSFAC + 201977199 201977213 7.0E-06 CTCCCCACCCCCATC 15 V_NFE2_Q6_M02104 TRANSFAC - 201984208 201984223 5.0E-06 CCTGACTAAGCTGAGC 16 V_PR_02_M00957 TRANSFAC + 201979210 201979236 2.0E-06 GGCCAGAGTCCTGGGTGTTCTGGGAAA 27 V_ARP1_01_M00155 TRANSFAC + 201979284 201979299 4.0E-06 TGAATCTCTGGAATTT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 201977200 201977213 5.0E-06 GATGGGGGTGGGGA 14 V_FEV_01_M02269 TRANSFAC + 201979625 201979632 1.0E-05 CAGGAAAT 8 V_STAT1_Q6_M01823 TRANSFAC + 201979227 201979236 2.0E-06 TTCTGGGAAA 10 V_DTYPEPA_B_M00334 TRANSFAC + 201979519 201979528 5.0E-06 ATCATTAAAC 10 V_GLIS2_04_M02863 TRANSFAC - 201978778 201978791 4.0E-06 AGTATTAATATATT 14 V_SOX14_03_M02798 TRANSFAC + 201978774 201978789 1.0E-05 GGTAAATATATTAATA 16 V_T3RALPHA_Q6_M01724 TRANSFAC - 201977231 201977241 1.0E-06 TTTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.