Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ELAVL3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1995 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) chr19 - 11591303 - 11596803 11591803 Transcription Factor Binding Sites   Download all TFBS in the ELAVL3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HES5_bHLH_DBD_dimeric_12_1 SELEX + 11593507 11593518 6.0E-06 GGGCACGTGCCT 12 HES5_bHLH_DBD_dimeric_12_1 SELEX - 11593507 11593518 4.0E-06 AGGCACGTGCCC 12 SPIC_ETS_full_monomeric_14_1 SELEX - 11593708 11593721 6.0E-06 TAAAACAGGAAGCC 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 11590389 11590399 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 11590465 11590475 1.0E-05 GCCCCGCCCCC 11 RFX4_RFX_DBD_dimeric_16_1 SELEX + 11593256 11593271 2.0E-06 GGTTCCCATGGAAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 11593256 11593271 6.0E-06 GGTTTCCATGGGAACC 16 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 11592939 11592953 8.0E-06 TGATTGGGCAAATTA 15 HEY2_bHLH_full_dimeric_10_1 SELEX + 11593508 11593517 7.0E-06 GGCACGTGCC 10 HEY2_bHLH_full_dimeric_10_1 SELEX - 11593508 11593517 7.0E-06 GGCACGTGCC 10 EWSR1-FLI1_MA0149.1 JASPAR - 11591814 11591831 6.0E-06 GGAGGGAGGGAGGGTGGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 11591815 11591832 7.0E-06 GGGAGGGAGGGAGGGTGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 11591818 11591835 1.0E-06 GGAGGGAGGGAGGGAGGG 18 Esrrb_MA0141.1 JASPAR + 11590616 11590627 1.0E-06 CGCTCAAGGTCA 12 NFYA_MA0060.1 JASPAR - 11591917 11591932 1.0E-06 CGCAGCCAATGAGCGA 16 Ar_MA0007.1 JASPAR - 11593752 11593773 7.0E-06 AGAGGAACAACCAGTGCCAAAA 22 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 11593256 11593271 1.0E-06 GGTTCCCATGGAAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 11593256 11593271 1.0E-06 GGTTTCCATGGGAACC 16 NFATC1_NFAT_full_dimeric_14_1 SELEX + 11593257 11593270 0.0E+00 GTTCCCATGGAAAC 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 11593257 11593270 0.0E+00 GTTTCCATGGGAAC 14 HES7_bHLH_DBD_dimeric_12_1 SELEX + 11593507 11593518 5.0E-06 GGGCACGTGCCT 12 HES7_bHLH_DBD_dimeric_12_1 SELEX - 11593507 11593518 4.0E-06 AGGCACGTGCCC 12 SP1_MA0079.2 JASPAR + 11590390 11590399 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 11590465 11590474 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 11590765 11590774 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 11591119 11591128 3.0E-06 CCCCTCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 11591897 11591906 6.0E-06 AGCAGCTGCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 11590462 11590478 2.0E-06 TAGGCCCCGCCCCCAGG 17 HEY1_bHLH_DBD_dimeric_10_1 SELEX + 11593508 11593517 5.0E-06 GGCACGTGCC 10 HEY1_bHLH_DBD_dimeric_10_1 SELEX - 11593508 11593517 5.0E-06 GGCACGTGCC 10 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 11592006 11592022 9.0E-06 CGCTTTTGGGGGATTCA 17 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 11590619 11590628 3.0E-06 TCAAGGTCAC 10 SOX9_HMG_full_dimeric_16_3 SELEX + 11592619 11592634 7.0E-06 CTGACTGTGGAGTCAT 16 CTCF_C2H2_full_monomeric_17_1 SELEX + 11593580 11593596 1.0E-06 CACGCCACCTAGCGGCC 17 MZF1_5-13_MA0057.1 JASPAR + 11592647 11592656 8.0E-06 CTAGGGGGAA 10 RFX2_RFX_DBD_dimeric_16_1 SELEX + 11593256 11593271 1.0E-06 GGTTCCCATGGAAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 11593256 11593271 1.0E-06 GGTTTCCATGGGAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 11593256 11593271 0.0E+00 GGTTCCCATGGAAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 11593256 11593271 1.0E-06 GGTTTCCATGGGAACC 16 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 11590502 11590516 8.0E-06 TGCCACGCCCTGCCT 15 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 11590618 11590628 5.0E-06 CTCAAGGTCAC 11 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 11590619 11590629 3.0E-06 TCAAGGTCACC 11 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 11593170 11593180 6.0E-06 GTTCCCCACCC 11 REST_MA0138.2 JASPAR + 11592780 11592800 0.0E+00 TTCAGCACCACAGACAGCAAT 21 NFIA_NFI_full_monomeric_10_1 SELEX - 11593752 11593761 5.0E-06 AGTGCCAAAA 10 Zfx_MA0146.1 JASPAR - 11590286 11590299 8.0E-06 GGCGCCTGGGCCTC 14 V_KLF15_Q2_M01714 TRANSFAC - 11593689 11593702 9.0E-06 GGGAAGGGGAGTTG 14 V_STAT3_01_M00225 TRANSFAC - 11593652 11593672 1.0E-05 CCCCATTTCCCGGAGGAGGAT 21 V_USF_Q6_M00187 TRANSFAC + 11593543 11593552 2.0E-06 GTCACGTGGC 10 V_ZFP410_04_M02936 TRANSFAC + 11593604 11593620 6.0E-06 GCTCCCCGCCCCTCTCT 17 V_MAX_Q6_M01830 TRANSFAC - 11593544 11593555 1.0E-05 GCAGCCACGTGA 12 V_NRSF_Q4_M01028 TRANSFAC - 11592781 11592799 1.0E-06 TTGCTGTCTGTGGTGCTGA 19 V_ERR3_Q2_01_M02094 TRANSFAC + 11590617 11590629 1.0E-06 GCTCAAGGTCACC 13 V_LRH1_Q5_01_M02098 TRANSFAC + 11590617 11590627 2.0E-06 GCTCAAGGTCA 11 V_STAT_Q6_M00777 TRANSFAC + 11592536 11592548 8.0E-06 GATCCTTCTTGGA 13 V_EBOX_Q6_01_M01034 TRANSFAC - 11593542 11593551 2.0E-06 CCACGTGACC 10 V_SP1_Q6_01_M00931 TRANSFAC - 11590389 11590398 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 11590466 11590475 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 11592754 11592763 7.0E-06 GGGGCGGGGT 10 V_SP1_03_M02281 TRANSFAC + 11590390 11590399 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 11590465 11590474 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 11590765 11590774 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 11591119 11591128 3.0E-06 CCCCTCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 11590504 11590515 3.0E-06 GCCACGCCCTGC 12 V_SP1_02_M01303 TRANSFAC + 11592754 11592764 8.0E-06 GGGGCGGGGTC 11 V_SP1_02_M01303 TRANSFAC - 11593605 11593615 3.0E-06 GGGGCGGGGAG 11 V_GC_01_M00255 TRANSFAC - 11590387 11590400 3.0E-06 CGGGGGCGGGGCTG 14 V_GC_01_M00255 TRANSFAC + 11590464 11590477 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC - 11591116 11591129 5.0E-06 TGGGGGAGGGGCCG 14 V_FREAC3_01_M00291 TRANSFAC - 11592716 11592731 8.0E-06 CCGACGTAAACATGCA 16 V_FOXO1_02_M00474 TRANSFAC + 11592716 11592729 9.0E-06 TGCATGTTTACGTC 14 V_KROX_Q6_M00982 TRANSFAC - 11590350 11590363 4.0E-06 TCCACCCCCGCCCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 11591120 11591129 4.0E-06 CCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC - 11590388 11590400 2.0E-06 CGGGGGCGGGGCT 13 V_SP1_Q6_M00196 TRANSFAC + 11590464 11590476 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 11591117 11591129 7.0E-06 TGGGGGAGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 11590756 11590769 1.0E-05 AGGGGAGAGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 11590761 11590774 2.0E-06 GGGGGAGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 11590884 11590897 1.0E-05 AGGGGAGAGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 11591821 11591834 3.0E-06 GAGGGAGGGAGGGA 14 V_AP2BETA_Q3_M01858 TRANSFAC - 11590776 11590791 0.0E+00 GCCTCGGGCTGCGGGG 16 V_EGR1_Q6_M01873 TRANSFAC + 11593332 11593341 4.0E-06 GCGGGGGCGG 10 V_EGR1_04_M02848 TRANSFAC + 11590415 11590430 3.0E-06 TGCCGAGTGGGAATCC 16 V_ASCL2_03_M02737 TRANSFAC - 11591893 11591909 1.0E-05 GCTGGCAGCTGCTGCTA 17 V_GLIS2_03_M02759 TRANSFAC + 11592543 11592558 8.0E-06 CTTGGACCCCACAGAA 16 V_REST_01_M01256 TRANSFAC - 11592783 11592804 1.0E-06 TCGGATTGCTGTCTGTGGTGCT 22 V_AHR_01_M00139 TRANSFAC - 11593577 11593594 3.0E-06 CCGCTAGGTGGCGTGCGA 18 V_KLF7_03_M02773 TRANSFAC - 11590463 11590478 6.0E-06 TAGGCCCCGCCCCCAG 16 V_SP3_Q3_M00665 TRANSFAC + 11592749 11592762 9.0E-06 ACACTGGGGCGGGG 14 V_SP1_01_M00008 TRANSFAC + 11592754 11592763 3.0E-06 GGGGCGGGGT 10 V_BLIMP1_Q6_M01066 TRANSFAC - 11591381 11591396 9.0E-06 CCGAAAGGGAATCGGG 16 V_SF1_Q6_01_M01132 TRANSFAC - 11590619 11590627 3.0E-06 TGACCTTGA 9 V_TFIII_Q6_M00706 TRANSFAC + 11590281 11590289 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC + 11590389 11590399 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 11590465 11590475 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 11591118 11591128 5.0E-06 GCCCCTCCCCC 11 V_USF_Q6_01_M00796 TRANSFAC - 11593542 11593553 2.0E-06 AGCCACGTGACC 12 V_ALPHACP1_01_M00687 TRANSFAC - 11591920 11591930 0.0E+00 CAGCCAATGAG 11 V_NFYC_Q5_M02107 TRANSFAC - 11591917 11591930 2.0E-06 CAGCCAATGAGCGA 14 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 11591814 11591822 8.0E-06 GAGGGTGGG 9 V_ERR2_01_M01589 TRANSFAC + 11590619 11590630 0.0E+00 TCAAGGTCACCT 12 V_NFY_01_M00287 TRANSFAC - 11591917 11591932 1.0E-06 CGCAGCCAATGAGCGA 16 V_BDP1_01_M01796 TRANSFAC - 11591792 11591803 6.0E-06 GGACTTGAACAC 12 V_NRSF_01_M00256 TRANSFAC + 11592780 11592800 0.0E+00 TTCAGCACCACAGACAGCAAT 21 V_ASCL2_04_M02841 TRANSFAC + 11592862 11592877 3.0E-06 CAGTCCCCACCCAATC 16 V_REST_02_M02256 TRANSFAC + 11592780 11592800 0.0E+00 TTCAGCACCACAGACAGCAAT 21 V_P53_01_M00034 TRANSFAC + 11590482 11590501 2.0E-06 GGGCGTGCCCGGGCGTGGCC 20 V_P53_01_M00034 TRANSFAC - 11590482 11590501 2.0E-06 GGCCACGCCCGGGCACGCCC 20 V_NFAT2_02_M01749 TRANSFAC - 11593258 11593268 3.0E-06 TTCCATGGGAA 11 V_NFAT2_02_M01749 TRANSFAC + 11593259 11593269 2.0E-06 TCCCATGGAAA 11 V_ZFP281_01_M01597 TRANSFAC - 11591119 11591129 1.0E-06 TGGGGGAGGGG 11 V_SOX14_04_M02901 TRANSFAC - 11592862 11592878 8.0E-06 GGATTGGGTGGGGACTG 17 V_ZFP281_04_M02831 TRANSFAC + 11590763 11590777 4.0E-06 CTCCCCTCCCCCTCC 15 V_ZFP281_04_M02831 TRANSFAC + 11591117 11591131 4.0E-06 GGCCCCTCCCCCATC 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 11591814 11591831 6.0E-06 GGAGGGAGGGAGGGTGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 11591815 11591832 7.0E-06 GGGAGGGAGGGAGGGTGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 11591818 11591835 1.0E-06 GGAGGGAGGGAGGGAGGG 18 V_ERR1_Q2_01_M02093 TRANSFAC + 11590620 11590630 5.0E-06 CAAGGTCACCT 11 V_SP1_Q2_01_M00933 TRANSFAC - 11590349 11590358 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 11590390 11590399 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 11590465 11590474 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 11593607 11593616 7.0E-06 CCCCGCCCCT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 11590352 11590365 4.0E-06 GGCGGGGGTGGAGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 11590764 11590777 2.0E-06 GGAGGGGGAGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 11591118 11591131 1.0E-06 GATGGGGGAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 11591806 11591819 4.0E-06 GGTGGGCGAGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 11592676 11592689 7.0E-06 GTTGGGGGTGGCGC 14 V_NFYA_Q5_M02106 TRANSFAC - 11591917 11591930 1.0E-06 CAGCCAATGAGCGA 14 V_SP1_Q4_01_M00932 TRANSFAC - 11590388 11590400 2.0E-06 CGGGGGCGGGGCT 13 V_SP1_Q4_01_M00932 TRANSFAC + 11590464 11590476 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 11591117 11591129 8.0E-06 TGGGGGAGGGGCC 13 V_RNF96_01_M01199 TRANSFAC - 11593136 11593145 7.0E-06 GCCCGCAGCC 10 V_CEBPA_Q6_M01866 TRANSFAC - 11592941 11592953 9.0E-06 TGATTGGGCAAAT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.