Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

EGR3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 1960 early growth response 3 chr8 - 22549402 - 22555815 22549902 Egr3_C2H2_DBD_monomeric_15_1 V_EGR3_01_M00245 Transcription Factor Binding Sites   Download all TFBS in the EGR3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 22551886 22551904 9.0E-06 TGGCCACAGGATGGCAGGA 19 SP8_C2H2_DBD_monomeric_12_1 SELEX - 22552360 22552371 4.0E-06 AACACTCCCACT 12 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 22551301 22551313 8.0E-06 ATAAACACACACA 13 SP3_C2H2_DBD_monomeric_11_1 SELEX + 22549763 22549773 1.0E-05 CCCACACCCCC 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 22552797 22552807 4.0E-06 CCCACGCCCCC 11 POU2F1_POU_DBD_dimeric_14_1 SELEX - 22552972 22552985 7.0E-06 CCAAAATATGCAAA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 22552797 22552807 6.0E-06 CCCACGCCCCC 11 POU3F3_POU_DBD_monomeric_12_1 SELEX + 22552973 22552984 8.0E-06 TTGCATATTTTG 12 SRF_MADS_DBD_dimeric_12_1 SELEX + 22551054 22551065 1.0E-06 CCCATATATGGA 12 SRF_MADS_DBD_dimeric_12_1 SELEX - 22551054 22551065 1.0E-06 TCCATATATGGG 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 22552972 22552984 4.0E-06 TTTGCATATTTTG 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 22552971 22552979 2.0E-06 TATGCAAAT 9 HINFP1_C2H2_full_dimeric_20_1 SELEX - 22553271 22553290 5.0E-06 GCGGACCCCACAGCGTCTCC 20 POU2F3_POU_DBD_monomeric_9_1 SELEX - 22552971 22552979 2.0E-06 TATGCAAAT 9 EWSR1-FLI1_MA0149.1 JASPAR + 22551228 22551245 1.0E-05 GAGAGGAAAGAAGGATAC 18 POU1F1_POU_DBD_monomeric_14_1 SELEX - 22552968 22552981 1.0E-06 AATATGCAAATCTT 14 POU2F2_POU_DBD_monomeric_11_1 SELEX - 22552970 22552980 1.0E-06 ATATGCAAATC 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 22552971 22552979 2.0E-06 TATGCAAAT 9 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 22553647 22553659 8.0E-06 AAGCAACAAGTCC 13 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 22552971 22552979 2.0E-06 TATGCAAAT 9 SRF_MA0083.1 JASPAR + 22551053 22551064 0.0E+00 GCCCATATATGG 12 SRF_MA0083.1 JASPAR - 22551055 22551066 0.0E+00 GTCCATATATGG 12 ZNF238_C2H2_full_monomeric_13_1 SELEX - 22551415 22551427 5.0E-06 TCGCCAGATGTTT 13 POU3F3_POU_DBD_monomeric_13_1 SELEX - 22552969 22552981 0.0E+00 AATATGCAAATCT 13 RUNX2_RUNX_DBD_dimeric_18_1 SELEX - 22551784 22551801 0.0E+00 TCACCACGAAAACCGCAC 18 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 22551307 22551317 8.0E-06 TCAAATAAACA 11 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 22553090 22553099 9.0E-06 AAAAATTAGC 10 MNT_bHLH_DBD_dimeric_10_1 SELEX + 22551833 22551842 6.0E-06 AACACGTGCA 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 22552972 22552985 1.0E-05 CCAAAATATGCAAA 14 SP1_MA0079.2 JASPAR + 22547560 22547569 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 22550843 22550852 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR + 22551304 22551315 1.0E-06 GTGTGTTTATTT 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 22551307 22551317 3.0E-06 TCAAATAAACA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 22551826 22551836 7.0E-06 ATAGATAAACA 11 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 22549324 22549338 1.0E-05 CAGCTACAGGTAGTT 15 PRDM4_C2H2_full_monomeric_13_1 SELEX - 22553081 22553093 7.0E-06 TTTTCAGGCCCCC 13 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 22547437 22547451 5.0E-06 CACACACACTCACAC 15 POU3F1_POU_DBD_monomeric_12_1 SELEX - 22552969 22552980 1.0E-06 ATATGCAAATCT 12 Stat3_MA0144.1 JASPAR - 22550522 22550531 1.0E-05 TGCCTGGAAG 10 SRF_MADS_full_dimeric_16_1 SELEX + 22551052 22551067 0.0E+00 TGCCCATATATGGACA 16 SRF_MADS_full_dimeric_16_1 SELEX - 22551052 22551067 0.0E+00 TGTCCATATATGGGCA 16 POU2F1_POU_DBD_monomeric_12_1 SELEX - 22552970 22552981 0.0E+00 AATATGCAAATC 12 ELF1_ETS_full_monomeric_12_1 SELEX + 22551458 22551469 8.0E-06 AACCCGGAAGGC 12 Sox11_HMG_DBD_dimeric_15_1 SELEX - 22553641 22553655 1.0E-05 AACAAGTCCAGCGTG 15 POU3F2_POU_DBD_monomeric_12_1 SELEX - 22552969 22552980 1.0E-06 ATATGCAAATCT 12 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 22551885 22551902 5.0E-06 CTGCCATCCTGTGGCCAC 18 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 22551303 22551315 2.0E-06 AAATAAACACACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 22551301 22551313 4.0E-06 ATAAACACACACA 13 RREB1_MA0073.1 JASPAR - 22551347 22551366 6.0E-06 CCCCACCCCACCGCCCACCT 20 RREB1_MA0073.1 JASPAR - 22553065 22553084 8.0E-06 CCCCACCCCCACCCCCACCG 20 RREB1_MA0073.1 JASPAR - 22553066 22553085 9.0E-06 CCCCCACCCCCACCCCCACC 20 RUNX3_RUNX_DBD_dimeric_18_1 SELEX - 22551784 22551801 0.0E+00 TCACCACGAAAACCGCAC 18 V_MEQ_01_M02049 TRANSFAC + 22547411 22547419 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC - 22551302 22551310 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC - 22547442 22547461 5.0E-06 GTATGTGTGTGTGTGAGTGT 20 V_SRF_Q6_M00186 TRANSFAC + 22551053 22551066 0.0E+00 GCCCATATATGGAC 14 V_SRF_Q6_M00186 TRANSFAC - 22551053 22551066 0.0E+00 GTCCATATATGGGC 14 V_ER_Q6_02_M00959 TRANSFAC + 22548896 22548906 3.0E-06 TAGGTCACGGT 11 V_TCF3_01_M01594 TRANSFAC - 22551121 22551133 9.0E-06 GCTTTCTAATGTT 13 V_MYOD_Q6_M00184 TRANSFAC + 22553442 22553451 7.0E-06 TCCACCTGTC 10 V_FLI1_Q6_M01208 TRANSFAC + 22553375 22553385 9.0E-06 AAGGAAGTGAG 11 V_POU3F3_01_M03090 TRANSFAC + 22552968 22552984 1.0E-06 AAGATTTGCATATTTTG 17 V_ZFX_01_M01593 TRANSFAC + 22549044 22549059 6.0E-06 CTCCGGGCCGCGGCGC 16 V_OCT1_Q5_01_M00930 TRANSFAC + 22552969 22552979 2.0E-06 AGATTTGCATA 11 V_EGR_Q6_M00807 TRANSFAC - 22550028 22550038 6.0E-06 GTGGGGGCAGC 11 V_OCTAMER_01_M01324 TRANSFAC + 22552968 22552984 1.0E-06 AAGATTTGCATATTTTG 17 V_IRF2_Q6_M01882 TRANSFAC + 22552993 22553008 6.0E-06 TGGAAAAGGAAAGAAG 16 V_RP58_01_M00532 TRANSFAC + 22551414 22551425 1.0E-06 AAAACATCTGGC 12 V_OCT1_01_M00135 TRANSFAC - 22552966 22552984 0.0E+00 CAAAATATGCAAATCTTGG 19 V_POU2F3_01_M01476 TRANSFAC - 22552967 22552982 3.0E-06 AAATATGCAAATCTTG 16 V_FOXJ1_03_M02750 TRANSFAC - 22551301 22551316 5.0E-06 CAAATAAACACACACA 16 V_SP1_03_M02281 TRANSFAC + 22547560 22547569 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 22550843 22550852 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC + 22551304 22551316 7.0E-06 GTGTGTTTATTTG 13 V_OCT_C_M00210 TRANSFAC + 22552968 22552980 2.0E-06 AAGATTTGCATAT 13 V_NERF_Q2_M00531 TRANSFAC - 22553201 22553218 3.0E-06 CAGCAGGAAGCACTCTGG 18 V_SP1_02_M01303 TRANSFAC - 22550841 22550851 3.0E-06 GGGGCGGGGGG 11 V_PU1_Q4_M01172 TRANSFAC + 22548059 22548077 6.0E-06 TCCGCCTTCTTCTCCTTTT 19 V_GM497_04_M02864 TRANSFAC + 22547434 22547449 4.0E-06 ACACACACACACTCAC 16 V_GM497_04_M02864 TRANSFAC + 22547474 22547489 2.0E-06 GCACGCACACACTCGC 16 V_PAX3_B_M00327 TRANSFAC + 22548892 22548912 4.0E-06 CAAGTAGGTCACGGTCTTGTT 21 V_TCFAP2E_04_M02926 TRANSFAC + 22551179 22551192 2.0E-06 CTCTTGAAAAAAAG 14 V_LDSPOLYA_B_M00317 TRANSFAC + 22551299 22551314 8.0E-06 ATTGTGTGTGTTTATT 16 V_TAL1_GATA1_01_M02243 TRANSFAC + 22551817 22551834 9.0E-06 GTTGAAGGGATAGATAAA 18 V_BARBIE_01_M00238 TRANSFAC - 22548066 22548080 1.0E-05 AGCAAAAGGAGAAGA 15 V_SRF_C_M00215 TRANSFAC - 22551051 22551065 0.0E+00 TCCATATATGGGCAG 15 V_ZNF219_01_M01122 TRANSFAC + 22550838 22550849 4.0E-06 CGCCCCCCCGCC 12 V_ZNF219_01_M01122 TRANSFAC - 22553070 22553081 8.0E-06 CACCCCCACCCC 12 V_OCT1_02_M00136 TRANSFAC - 22552970 22552984 1.0E-05 CAAAATATGCAAATC 15 V_GATA3_05_M02859 TRANSFAC - 22551407 22551428 4.0E-06 TTCGCCAGATGTTTTCAACTCT 22 V_KROX_Q6_M00982 TRANSFAC - 22552798 22552811 1.0E-06 GCCGCCCACGCCCC 14 V_KROX_Q6_M00982 TRANSFAC - 22553070 22553083 3.0E-06 CCCACCCCCACCCC 14 V_NFKB_Q6_M00194 TRANSFAC - 22551852 22551865 9.0E-06 TAGGGAATTTACTG 14 V_SP1_Q6_M00196 TRANSFAC - 22550841 22550853 6.0E-06 GGGGGGCGGGGGG 13 V_MAZ_Q6_01_M02023 TRANSFAC + 22552208 22552221 0.0E+00 GGGGGAGGAGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 22552486 22552499 6.0E-06 AGGGGAGGGGAGCG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 22552491 22552504 0.0E+00 AGGGGAGGGGAGGG 14 V_AP2BETA_Q3_M01858 TRANSFAC + 22552512 22552527 3.0E-06 GTGGAGGGCTGGGGAC 16 V_OCT1_05_M00161 TRANSFAC + 22552968 22552981 9.0E-06 AAGATTTGCATATT 14 V_EGR1_Q6_M01873 TRANSFAC + 22552801 22552810 7.0E-06 GCGTGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 22552995 22553009 7.0E-06 TCTTCTTTCCTTTTC 15 V_SOX_Q6_M01014 TRANSFAC - 22547713 22547725 9.0E-06 CGCTTTGTTCAGT 13 V_E4F1_Q6_01_M02091 TRANSFAC + 22551042 22551051 5.0E-06 GTGACGTAGC 10 V_OCT1_04_M00138 TRANSFAC - 22552964 22552986 5.0E-06 GCCAAAATATGCAAATCTTGGGA 23 Tal1_Gata1_MA0140.1 JASPAR + 22551817 22551834 9.0E-06 GTTGAAGGGATAGATAAA 18 V_RREB1_01_M00257 TRANSFAC + 22549762 22549775 2.0E-06 CCCCACACCCCCAC 14 V_RREB1_01_M00257 TRANSFAC - 22553071 22553084 5.0E-06 CCCCACCCCCACCC 14 V_OCAB_Q6_M02113 TRANSFAC - 22552970 22552980 0.0E+00 ATATGCAAATC 11 V_SRF_Q5_02_M01007 TRANSFAC + 22551050 22551068 1.0E-06 GCTGCCCATATATGGACAG 19 V_SRF_Q5_02_M01007 TRANSFAC - 22551051 22551069 0.0E+00 TCTGTCCATATATGGGCAG 19 V_SRF_Q5_02_M01007 TRANSFAC - 22552888 22552906 1.0E-06 CCGCTCCTTGTATGGCTCT 19 V_STAT4_Q5_M02117 TRANSFAC + 22551525 22551534 8.0E-06 TTAAGAGAAA 10 V_SP3_Q3_M00665 TRANSFAC - 22552039 22552052 9.0E-06 AGCCCTGTGGAAGG 14 V_SP3_Q3_M00665 TRANSFAC - 22553197 22553210 6.0E-06 AGCACTCTGGAGGG 14 V_CTCF_02_M01259 TRANSFAC + 22551883 22551902 4.0E-06 CTGTGGCCACAGGATGGCAG 20 V_EGR2_01_M00246 TRANSFAC + 22552799 22552810 1.0E-05 GGGCGTGGGCGG 12 V_MZF1_02_M00084 TRANSFAC - 22547557 22547569 1.0E-05 GGGGGAGGGGGTA 13 V_MZF1_02_M00084 TRANSFAC + 22549977 22549989 1.0E-05 TGGTGAGGGAGAA 13 V_SRF_03_M01304 TRANSFAC + 22551053 22551065 6.0E-06 GCCCATATATGGA 13 V_SRF_03_M01304 TRANSFAC - 22551054 22551066 2.0E-06 GTCCATATATGGG 13 V_OCT1_B_M00342 TRANSFAC - 22552970 22552979 1.0E-06 TATGCAAATC 10 V_OCT_Q6_M00795 TRANSFAC + 22552969 22552979 1.0E-06 AGATTTGCATA 11 V_GATA4_Q3_M00632 TRANSFAC + 22551127 22551138 1.0E-05 AGAAAGCAGGAA 12 V_SP4_Q5_M01273 TRANSFAC + 22550842 22550852 5.0E-06 CCCCCGCCCCC 11 V_HFH8_01_M00294 TRANSFAC + 22551304 22551316 1.0E-06 GTGTGTTTATTTG 13 V_ZIC2_05_M02940 TRANSFAC - 22553209 22553223 7.0E-06 ACGCGCAGCAGGAAG 15 V_CREBP1_Q2_M00179 TRANSFAC + 22551041 22551052 6.0E-06 CGTGACGTAGCT 12 V_TCFE2A_03_M02823 TRANSFAC + 22551830 22551846 9.0E-06 ATAAACACGTGCACTGA 17 V_OCT2_01_M01368 TRANSFAC - 22552967 22552982 3.0E-06 AAATATGCAAATCTTG 16 V_CNOT3_01_M01253 TRANSFAC + 22552922 22552931 8.0E-06 GGCCGCGCCC 10 V_ZBTB3_03_M02825 TRANSFAC - 22553315 22553331 8.0E-06 ATGGGCACTGCAGCCTT 17 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 22551413 22551428 5.0E-06 TTCGCCAGATGTTTTC 16 V_OCT1_Q6_M00195 TRANSFAC - 22552968 22552982 2.0E-06 AAATATGCAAATCTT 15 V_EBNA1_01_M01745 TRANSFAC + 22551531 22551546 3.0E-06 GAAAGGGAGTGCTTCC 16 V_PLAG1_01_M01778 TRANSFAC + 22547944 22547959 9.0E-06 GAGGCACTGGAGGGGA 16 V_ZFP161_04_M02933 TRANSFAC - 22549940 22549953 9.0E-06 TACGCGCAAGGCGT 14 V_SRF_01_M00152 TRANSFAC + 22551051 22551068 0.0E+00 CTGCCCATATATGGACAG 18 V_SRF_01_M00152 TRANSFAC - 22551051 22551068 0.0E+00 CTGTCCATATATGGGCAG 18 V_FOX_Q2_M00809 TRANSFAC + 22551304 22551316 8.0E-06 GTGTGTTTATTTG 13 V_ZFP281_01_M01597 TRANSFAC - 22547560 22547570 3.0E-06 AGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 22553068 22553078 1.0E-06 TGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 22553074 22553084 1.0E-06 TGGGGGTGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC + 22551055 22551069 0.0E+00 CCATATATGGACAGA 15 V_SRF_Q4_M00810 TRANSFAC - 22551048 22551065 4.0E-06 TCCATATATGGGCAGCTA 18 V_SRF_Q4_M00810 TRANSFAC + 22551054 22551071 0.0E+00 CCCATATATGGACAGACA 18 V_SRF_Q4_M00810 TRANSFAC + 22552891 22552908 9.0E-06 GCCATACAAGGAGCGGAT 18 V_SRF_02_M01257 TRANSFAC - 22551049 22551066 1.0E-06 GTCCATATATGGGCAGCT 18 V_SRF_02_M01257 TRANSFAC + 22551053 22551070 0.0E+00 GCCCATATATGGACAGAC 18 V_ZFP281_04_M02831 TRANSFAC - 22553066 22553080 2.0E-06 ACCCCCACCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC - 22553072 22553086 3.0E-06 GCCCCCACCCCCACC 15 V_HFH3_01_M00289 TRANSFAC + 22551304 22551316 2.0E-06 GTGTGTTTATTTG 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 22551228 22551245 1.0E-05 GAGAGGAAAGAAGGATAC 18 V_FOXJ2_01_M00422 TRANSFAC - 22551302 22551319 5.0E-06 CCTCAAATAAACACACAC 18 V_VDR_Q3_M00444 TRANSFAC + 22547586 22547600 3.0E-06 GGGTATAGAGGGAGA 15 V_E4F1_Q6_M00694 TRANSFAC - 22551042 22551051 2.0E-06 GCTACGTCAC 10 V_FOXO1_01_M00473 TRANSFAC - 22551305 22551314 7.0E-06 AATAAACACA 10 V_PAX4_02_M00377 TRANSFAC + 22553089 22553099 1.0E-06 GAAAAATTAGC 11 V_SP1_Q2_01_M00933 TRANSFAC + 22550843 22550852 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 22552828 22552841 1.0E-06 GGTGCGGGAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 22553066 22553079 2.0E-06 GGTGGGGGTGGGGG 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 22553072 22553085 2.0E-06 GGTGGGGGTGGGGG 14 V_P300_01_M00033 TRANSFAC + 22551532 22551545 6.0E-06 AAAGGGAGTGCTTC 14 V_ZIC1_05_M02939 TRANSFAC - 22553209 22553223 8.0E-06 ACGCGCAGCAGGAAG 15 V_EGR3_01_M00245 TRANSFAC + 22552799 22552810 9.0E-06 GGGCGTGGGCGG 12 V_AP2_Q3_M00800 TRANSFAC + 22552196 22552211 4.0E-06 GCCCGCGGGCGAGGGG 16 V_AP2_Q3_M00800 TRANSFAC - 22553351 22553366 7.0E-06 CCCCGCAGGCTGAGCT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.