Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

EFNA4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1945 ephrin-A4 chr1 + 155031212 - 155036712 155036212 Transcription Factor Binding Sites   Download all TFBS in the EFNA4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 155034145 155034163 0.0E+00 TGACCACCAGATGGTGGTA 19 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 155037305 155037313 8.0E-06 GTTAATCCC 9 NFIA_NFI_full_dimeric_15_1 SELEX - 155034228 155034242 7.0E-06 TTGGAGGCATGCCAG 15 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 155036995 155037011 7.0E-06 GTATTATTAGCCCATTA 17 SOX21_HMG_DBD_dimeric_13_2 SELEX + 155036155 155036167 1.0E-05 GGAAAGTTATTCA 13 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 155036097 155036109 5.0E-06 ACAGAGGGTTAAC 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 155036155 155036167 3.0E-06 TGAATAACTTTCC 13 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 155037033 155037049 6.0E-06 CAGGGTAAGTGAGGTCA 17 NR2F1_MA0017.1 JASPAR - 155035901 155035914 7.0E-06 TAACCTTTGCCCAG 14 PITX1_homeodomain_full_monomeric_8_1 SELEX - 155037305 155037312 1.0E-05 TTAATCCC 8 MEF2B_MADS_full_dimeric_12_1 SELEX + 155037001 155037012 5.0E-06 GCTAATAATACC 12 Tcfcp2l1_MA0145.1 JASPAR + 155036274 155036287 3.0E-06 CCAGACCAAACCGG 14 POU6F2_POU_DBD_dimeric_16_1 SELEX + 155036994 155037009 1.0E-06 ATAATGGGCTAATAAT 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 155036994 155037009 0.0E+00 ATTATTAGCCCATTAT 16 SP1_MA0079.2 JASPAR - 155036546 155036555 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 155036553 155036562 3.0E-06 CCCCTCCCCC 10 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 155033705 155033719 3.0E-06 TGCACACACTCCCAT 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 155036995 155037007 8.0E-06 TATTAGCCCATTA 13 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 155037305 155037312 1.0E-05 TTAATCCC 8 EN1_homeodomain_full_dimeric_14_1 SELEX + 155036995 155037008 2.0E-06 TAATGGGCTAATAA 14 EN1_homeodomain_full_dimeric_14_1 SELEX - 155036995 155037008 1.0E-06 TTATTAGCCCATTA 14 NFIB_NFI_full_dimeric_15_1 SELEX - 155034228 155034242 6.0E-06 TTGGAGGCATGCCAG 15 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 155036995 155037008 1.0E-06 TAATGGGCTAATAA 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 155036995 155037008 1.0E-06 TTATTAGCCCATTA 14 REST_MA0138.2 JASPAR + 155037814 155037834 3.0E-06 TTCAGTACTGTGGGGAGCAGC 21 NRF1_NRF_full_dimeric_12_1 SELEX + 155034249 155034260 8.0E-06 TGCGCATGCCCT 12 POU4F1_POU_DBD_monomeric_14_1 SELEX - 155037509 155037522 9.0E-06 CTGAATTTTTAACA 14 RREB1_MA0073.1 JASPAR - 155037778 155037797 6.0E-06 CCCCATACCACAAACACAGC 20 V_CEBPG_Q6_M00622 TRANSFAC + 155035921 155035933 7.0E-06 CTTATTTAAAATC 13 RXR_RAR_DR5_MA0159.1 JASPAR + 155037801 155037817 9.0E-06 GGTTCATGCAGCATTCA 17 V_AREB6_01_M00412 TRANSFAC + 155036983 155036995 3.0E-06 ATCTCACCTGTAT 13 V_STAT5A_Q6_M01890 TRANSFAC + 155035938 155035950 9.0E-06 AAACTTCTAATAA 13 V_ZSCAN4_03_M02838 TRANSFAC - 155033709 155033725 1.0E-06 GAGGTGTGCACACACTC 17 V_ZFP187_03_M02830 TRANSFAC + 155036995 155037008 8.0E-06 TAATGGGCTAATAA 14 V_GEN_INI_B_M00315 TRANSFAC + 155036975 155036982 1.0E-05 CCTCATTT 8 V_EBF_Q6_M00977 TRANSFAC - 155035763 155035773 9.0E-06 TTCCCTAAAGA 11 V_OBOX5_05_M03066 TRANSFAC + 155037301 155037317 4.0E-06 GCAGGGGATTAACTATA 17 V_GCM_Q2_M00634 TRANSFAC + 155034253 155034264 6.0E-06 CATGCCCTCATT 12 V_OSF2_Q6_M00731 TRANSFAC - 155037784 155037791 1.0E-05 ACCACAAA 8 V_SOX14_05_M02902 TRANSFAC - 155036526 155036540 9.0E-06 CTCAAACAAAGGAGC 15 V_ZFP410_04_M02936 TRANSFAC - 155035347 155035363 3.0E-06 TACTCCCGCCCCACACA 17 V_GATA2_02_M00348 TRANSFAC + 155037426 155037435 2.0E-06 AGTGATAAGA 10 TAL1_TCF3_MA0091.1 JASPAR + 155034147 155034158 2.0E-06 CCACCATCTGGT 12 V_NRSF_Q4_M01028 TRANSFAC + 155036306 155036324 8.0E-06 CTGCTGCCCCTGCTGCGGA 19 V_OBOX1_01_M01450 TRANSFAC + 155037300 155037316 0.0E+00 TGCAGGGGATTAACTAT 17 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 155037508 155037519 0.0E+00 AATTTTTAACAG 12 V_COE1_Q6_M01871 TRANSFAC + 155034306 155034319 3.0E-06 CCTCTGGGGAATCT 14 V_GM397_03_M02760 TRANSFAC - 155033709 155033725 1.0E-06 GAGGTGTGCACACACTC 17 V_SATB1_Q3_M01723 TRANSFAC - 155035914 155035929 7.0E-06 TTAAATAAGGGTACAT 16 V_SP1_Q6_01_M00931 TRANSFAC + 155036168 155036177 7.0E-06 GGGGCGGGGT 10 V_DR4_Q2_M00965 TRANSFAC + 155036394 155036410 1.0E-06 GGAACTCCAGTAACCCC 17 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 155035903 155035915 9.0E-06 ATAACCTTTGCCC 13 V_GLI1_Q2_M01042 TRANSFAC + 155037742 155037751 4.0E-06 GACCACCCAC 10 V_GLI1_01_M01702 TRANSFAC + 155037742 155037752 2.0E-06 GACCACCCACT 11 V_EAR2_Q2_M01728 TRANSFAC - 155035901 155035914 5.0E-06 TAACCTTTGCCCAG 14 V_MAF_Q6_M00648 TRANSFAC - 155036207 155036222 0.0E+00 AAGAGGGAAGTTGCGG 16 V_SP1_03_M02281 TRANSFAC - 155036546 155036555 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 155036553 155036562 3.0E-06 CCCCTCCCCC 10 V_AREB6_04_M00415 TRANSFAC + 155036904 155036912 8.0E-06 CTGTTTCTT 9 V_PPAR_DR1_Q2_M00763 TRANSFAC - 155035902 155035914 1.0E-05 TAACCTTTGCCCA 13 V_SP1_02_M01303 TRANSFAC + 155036168 155036178 8.0E-06 GGGGCGGGGTC 11 V_MYBL1_04_M02884 TRANSFAC + 155034016 155034030 8.0E-06 TACCCAACTGCAGTT 15 V_CDX_Q5_M00991 TRANSFAC - 155036891 155036908 2.0E-06 AACAGAAGGACCAATAAA 18 V_MEF2A_Q6_M02024 TRANSFAC + 155035923 155035932 9.0E-06 TATTTAAAAT 10 V_MEF2A_Q6_M02024 TRANSFAC - 155035995 155036004 8.0E-06 TATTTTTAGG 10 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 155036397 155036411 6.0E-06 TGGGGTTACTGGAGT 15 V_PPARGRXRA_01_M02262 TRANSFAC + 155035900 155035914 1.0E-05 TCTGGGCAAAGGTTA 15 V_COMP1_01_M00057 TRANSFAC + 155037406 155037429 3.0E-06 TCATTACAATACCAATAACAAGTG 24 V_GLI3_02_M01704 TRANSFAC + 155037742 155037752 2.0E-06 GACCACCCACT 11 V_ZNF219_01_M01122 TRANSFAC - 155036548 155036559 1.0E-06 CTCCCCCCTCCC 12 V_ROAZ_01_M00467 TRANSFAC + 155034113 155034126 7.0E-06 GCAGCAAAGGGTGA 14 V_OBOX5_02_M01480 TRANSFAC + 155037301 155037317 4.0E-06 GCAGGGGATTAACTATA 17 V_GEN_INI3_B_M00314 TRANSFAC + 155036975 155036982 1.0E-05 CCTCATTT 8 V_ZIC3_01_M00450 TRANSFAC - 155037742 155037750 6.0E-06 TGGGTGGTC 9 V_HNF4_01_B_M00411 TRANSFAC + 155035901 155035915 6.0E-06 CTGGGCAAAGGTTAT 15 V_COUP_01_M00158 TRANSFAC - 155035901 155035914 7.0E-06 TAACCTTTGCCCAG 14 V_ZBED6_01_M01598 TRANSFAC - 155037382 155037393 3.0E-06 CAGGCTCTCCTG 12 V_MRF2_01_M00454 TRANSFAC + 155037407 155037420 1.0E-06 CATTACAATACCAA 14 V_OLF1_01_M00261 TRANSFAC - 155034300 155034321 1.0E-06 AGAGATTCCCCAGAGGGGTTCA 22 V_SP1_Q6_M00196 TRANSFAC + 155036166 155036178 7.0E-06 CAGGGGCGGGGTC 13 V_SP1_Q6_M00196 TRANSFAC + 155036552 155036564 7.0E-06 GGGGGGAGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 155036694 155036706 4.0E-06 GGGGGGCGGAGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 155036121 155036134 9.0E-06 CTGGGTGGAGAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 155036546 155036559 7.0E-06 GGGGGAGGGGGGAG 14 V_PAX2_01_M00098 TRANSFAC - 155037417 155037435 7.0E-06 TCTTATCACTTGTTATTGG 19 V_LXR_DR4_Q3_M00766 TRANSFAC + 155036394 155036409 8.0E-06 GGAACTCCAGTAACCC 16 V_OBOX2_01_M01364 TRANSFAC + 155037300 155037316 0.0E+00 TGCAGGGGATTAACTAT 17 V_IRF3_06_M02871 TRANSFAC - 155036227 155036240 3.0E-06 AGAGAAAGGTACAA 14 V_PITX3_01_M01343 TRANSFAC + 155037302 155037317 2.0E-06 CAGGGGATTAACTATA 16 V_PPARG_03_M00528 TRANSFAC + 155035898 155035914 1.0E-06 TATCTGGGCAAAGGTTA 17 V_TAL1BETAE47_01_M00065 TRANSFAC - 155034146 155034161 4.0E-06 ACCACCAGATGGTGGT 16 V_CRX_02_M01436 TRANSFAC + 155037300 155037315 3.0E-06 TGCAGGGGATTAACTA 16 V_KLF7_03_M02773 TRANSFAC - 155036165 155036180 3.0E-06 CTGACCCCGCCCCTGA 16 V_ZIC1_01_M00448 TRANSFAC - 155037742 155037750 6.0E-06 TGGGTGGTC 9 V_ARID3A_04_M02735 TRANSFAC + 155035918 155035934 8.0E-06 ACCCTTATTTAAAATCT 17 V_SMAD4_Q6_M00733 TRANSFAC - 155034384 155034398 0.0E+00 GTCGGTCAGCCAGCT 15 V_STAF_02_M00264 TRANSFAC - 155033693 155033713 2.0E-06 CACTCCCATCATCCAAGCAGA 21 V_SP1_01_M00008 TRANSFAC + 155036168 155036177 3.0E-06 GGGGCGGGGT 10 V_CTCF_02_M01259 TRANSFAC - 155034147 155034166 1.0E-06 CATTGACCACCAGATGGTGG 20 V_CTCF_01_M01200 TRANSFAC - 155034145 155034164 0.0E+00 TTGACCACCAGATGGTGGTA 20 V_GLI3_Q5_01_M01657 TRANSFAC - 155037743 155037751 6.0E-06 GTGGGTGGT 9 V_PAX8_B_M00328 TRANSFAC - 155037765 155037782 6.0E-06 ACAGCGAAGCATGACTTA 18 V_BCL6B_04_M02844 TRANSFAC - 155035347 155035362 2.0E-06 ACTCCCGCCCCACACA 16 V_GLI3_01_M01596 TRANSFAC - 155037741 155037751 2.0E-06 GTGGGTGGTCC 11 V_SP4_Q5_M01273 TRANSFAC - 155036553 155036563 5.0E-06 GCCCCTCCCCC 11 V_MTF1_06_M02882 TRANSFAC - 155035921 155035934 8.0E-06 AGATTTTAAATAAG 14 V_LBP9_01_M01592 TRANSFAC + 155036274 155036290 1.0E-06 CCAGACCAAACCGGACC 17 V_GLI2_01_M01703 TRANSFAC + 155037742 155037752 3.0E-06 GACCACCCACT 11 V_GABPBETA_Q3_M01876 TRANSFAC - 155035795 155035805 7.0E-06 AGCGGAAGGGA 11 V_AP4_01_M00005 TRANSFAC - 155036739 155036756 5.0E-06 AGCCACAGCTCCAGCCTG 18 V_OBOX2_02_M03064 TRANSFAC + 155037300 155037316 0.0E+00 TGCAGGGGATTAACTAT 17 V_AREB6_02_M00413 TRANSFAC + 155036984 155036995 4.0E-06 TCTCACCTGTAT 12 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 155034146 155034161 5.0E-06 ACCACCAGATGGTGGT 16 V_LUN1_01_M00480 TRANSFAC - 155038132 155038148 3.0E-06 TCCCAGCTACTTGGGAG 17 V_GATA3_02_M00350 TRANSFAC + 155037426 155037435 6.0E-06 AGTGATAAGA 10 V_HDX_01_M01333 TRANSFAC + 155035923 155035939 7.0E-06 TATTTAAAATCTTCCAA 17 V_HNF4_Q6_01_M01031 TRANSFAC + 155035902 155035915 4.0E-06 TGGGCAAAGGTTAT 14 V_PITX1_01_M01484 TRANSFAC + 155037300 155037316 0.0E+00 TGCAGGGGATTAACTAT 17 V_GEN_INI2_B_M00313 TRANSFAC + 155036975 155036982 1.0E-05 CCTCATTT 8 V_PXR_Q2_M00964 TRANSFAC + 155036173 155036184 9.0E-06 GGGGTCAGTGAA 12 V_BDP1_01_M01796 TRANSFAC + 155034295 155034306 5.0E-06 TGACTTGAACCC 12 V_DOBOX5_01_M01463 TRANSFAC + 155037301 155037317 1.0E-06 GCAGGGGATTAACTATA 17 V_NRF2_Q4_M00821 TRANSFAC + 155037761 155037773 8.0E-06 TTCCTAAGTCATG 13 V_ZBTB12_03_M02824 TRANSFAC - 155035266 155035282 9.0E-06 CCCGGGTTCTAGAAGCA 17 V_OTX2_01_M01387 TRANSFAC + 155037301 155037317 4.0E-06 GCAGGGGATTAACTATA 17 V_REST_02_M02256 TRANSFAC + 155037814 155037834 3.0E-06 TTCAGTACTGTGGGGAGCAGC 21 V_RSRFC4_01_M00026 TRANSFAC + 155036999 155037014 9.0E-06 GGGCTAATAATACCTA 16 V_T3RBETA_Q6_01_M02119 TRANSFAC + 155037034 155037050 2.0E-06 AGGGTAAGTGAGGTCAT 17 V_ZFP281_01_M01597 TRANSFAC + 155036545 155036555 7.0E-06 CGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 155036552 155036562 2.0E-06 GGGGGGAGGGG 11 V_RXR_RAR_01_M02272 TRANSFAC + 155037801 155037817 9.0E-06 GGTTCATGCAGCATTCA 17 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 155036399 155036413 3.0E-06 CCTGGGGTTACTGGA 15 V_ZFP281_04_M02831 TRANSFAC - 155036549 155036563 6.0E-06 GCCCCTCCCCCCTCC 15 V_ZFP281_04_M02831 TRANSFAC - 155036550 155036564 4.0E-06 CGCCCCTCCCCCCTC 15 V_GATA2_03_M00349 TRANSFAC + 155037426 155037435 5.0E-06 AGTGATAAGA 10 V_VDR_Q3_M00444 TRANSFAC + 155037035 155037049 0.0E+00 GGGTAAGTGAGGTCA 15 V_EFC_Q6_M00626 TRANSFAC - 155034286 155034299 3.0E-06 AGTCAACATGCAAA 14 V_SOX4_01_M01308 TRANSFAC - 155036529 155036536 1.0E-05 AACAAAGG 8 V_GSC_01_M01428 TRANSFAC - 155037301 155037317 1.0E-06 TATAGTTAATCCCCTGC 17 V_PITX2_01_M01447 TRANSFAC + 155037301 155037317 6.0E-06 GCAGGGGATTAACTATA 17 V_GLI_Q2_M01037 TRANSFAC - 155037741 155037752 1.0E-06 AGTGGGTGGTCC 12 V_SP1_Q2_01_M00933 TRANSFAC - 155036167 155036176 7.0E-06 CCCCGCCCCT 10 V_MEF2A_05_M01301 TRANSFAC - 155037002 155037013 3.0E-06 AGGTATTATTAG 12 V_GATA5_03_M02756 TRANSFAC + 155037423 155037439 4.0E-06 ACAAGTGATAAGAGCTT 17 V_UF1H3BETA_Q6_M01068 TRANSFAC + 155036543 155036556 1.0E-06 GGCGGGGGAGGGGG 14 V_HNF4_01_M00134 TRANSFAC + 155035899 155035917 2.0E-06 ATCTGGGCAAAGGTTATGT 19 V_GATA6_04_M02757 TRANSFAC + 155037423 155037439 4.0E-06 ACAAGTGATAAGAGCTT 17 V_SP1_Q4_01_M00932 TRANSFAC + 155036166 155036178 9.0E-06 CAGGGGCGGGGTC 13 V_SP1_Q4_01_M00932 TRANSFAC + 155036552 155036564 9.0E-06 GGGGGGAGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC - 155036694 155036706 6.0E-06 GGGGGGCGGAGCC 13 V_OBOX5_01_M01381 TRANSFAC + 155037301 155037317 3.0E-06 GCAGGGGATTAACTATA 17 V_OBOX3_02_M03065 TRANSFAC + 155037300 155037316 0.0E+00 TGCAGGGGATTAACTAT 17 V_ZIC2_01_M00449 TRANSFAC - 155037742 155037750 6.0E-06 TGGGTGGTC 9 V_OTX1_01_M01366 TRANSFAC + 155037301 155037317 3.0E-06 GCAGGGGATTAACTATA 17 V_SEF1_C_M00214 TRANSFAC - 155036405 155036423 2.0E-06 GGCCCGGCTACCTGGGGTT 19 V_OBOX6_06_M03067 TRANSFAC - 155037301 155037317 3.0E-06 TATAGTTAATCCCCTGC 17 V_OBOX3_01_M01466 TRANSFAC + 155037300 155037316 0.0E+00 TGCAGGGGATTAACTAT 17 V_SOX9_Q4_M01284 TRANSFAC - 155036527 155036537 2.0E-06 AAACAAAGGAG 11 PPARG_RXRA_MA0065.2 JASPAR + 155035900 155035914 1.0E-05 TCTGGGCAAAGGTTA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.