Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DNAH6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1768 dynein, axonemal, heavy chain 6 chr2 + 84738578 - 84744078 84743578 Transcription Factor Binding Sites   Download all TFBS in the DNAH6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints LBX2_homeodomain_DBD_dimeric_13_1 SELEX - 84743490 84743502 8.0E-06 ATCGAGCCAATTA 13 Sox1_HMG_DBD_dimeric_14_1 SELEX + 84743259 84743272 5.0E-06 TGAACGTCAAGTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 84743259 84743272 6.0E-06 TGACTTGACGTTCA 14 VSX1_homeodomain_full_monomeric_11_1 SELEX - 84743488 84743498 2.0E-06 AGCCAATTAGT 11 SOX10_HMG_full_dimeric_14_1 SELEX + 84743259 84743272 9.0E-06 TGAACGTCAAGTCA 14 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 84743490 84743504 1.0E-05 CAATCGAGCCAATTA 15 SOX8_HMG_DBD_dimeric_14_1 SELEX + 84743259 84743272 8.0E-06 TGAACGTCAAGTCA 14 IRF7_IRF_DBD_trimeric_17_1 SELEX + 84743298 84743314 5.0E-06 GAAAAGAAATTCCTGTA 17 ETV2_ETS_DBD_monomeric_11_1 SELEX + 84743612 84743622 8.0E-06 AACAGGAAACA 11 RFX2_RFX_DBD_dimeric_15_1 SELEX - 84743545 84743559 4.0E-06 CGTCGCCAGGCAACG 15 RFX2_RFX_DBD_dimeric_15_1 SELEX + 84743598 84743612 2.0E-06 GGTTGCTACGCAGCA 15 HOXA5_MA0158.1 JASPAR + 84743487 84743494 7.0E-06 CACTAATT 8 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 84743803 84743816 8.0E-06 AGAAAATCAATGGA 14 RFX3_RFX_DBD_dimeric_15_1 SELEX - 84743545 84743559 1.0E-06 CGTCGCCAGGCAACG 15 RFX3_RFX_DBD_dimeric_15_1 SELEX + 84743598 84743612 5.0E-06 GGTTGCTACGCAGCA 15 RFX4_RFX_DBD_dimeric_15_1 SELEX - 84743545 84743559 0.0E+00 CGTCGCCAGGCAACG 15 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX + 84743935 84743943 7.0E-06 CGCTGTTAA 9 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 84743803 84743816 4.0E-06 AGAAAATCAATGGA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 84743291 84743304 6.0E-06 GAAAACAGAAAAGA 14 V_FOXP1_01_M00987 TRANSFAC - 84743348 84743367 9.0E-06 TTAATTCTGTTTGCTTCGTT 20 V_HMGIY_Q3_M01010 TRANSFAC - 84743299 84743313 1.0E-06 ACAGGAATTTCTTTT 15 V_BCL6_01_M01183 TRANSFAC - 84743300 84743315 1.0E-06 TTACAGGAATTTCTTT 16 V_ETS_B_M00340 TRANSFAC + 84743612 84743625 8.0E-06 AACAGGAAACATTC 14 V_IRF_Q6_01_M00972 TRANSFAC + 84743292 84743302 5.0E-06 AAAACAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 84743290 84743305 1.0E-05 GGAAAACAGAAAAGAA 16 V_GBX2_01_M01382 TRANSFAC - 84743484 84743500 9.0E-06 CGAGCCAATTAGTGTCT 17 V_HOXD1_01_M01448 TRANSFAC + 84743485 84743501 9.0E-06 GACACTAATTGGCTCGA 17 V_BARBIE_01_M00238 TRANSFAC - 84743368 84743382 8.0E-06 AGCCAAAGGAGGTGG 15 V_HOXA3_02_M01337 TRANSFAC - 84743488 84743501 4.0E-06 TCGAGCCAATTAGT 14 V_RFX1_01_M00280 TRANSFAC + 84743336 84743352 1.0E-05 TGGTCGATAAGCAACGA 17 V_IRF_Q6_M00772 TRANSFAC - 84743292 84743306 5.0E-06 TTTCTTTTCTGTTTT 15 V_LHX2_01_M01325 TRANSFAC + 84743485 84743501 7.0E-06 GACACTAATTGGCTCGA 17 V_RFXDC2_03_M02790 TRANSFAC - 84743596 84743610 5.0E-06 CTGCGTAGCAACCAG 15 V_HOXA5_03_M02271 TRANSFAC + 84743487 84743494 7.0E-06 CACTAATT 8 V_GR_Q6_M00192 TRANSFAC - 84743776 84743794 7.0E-06 TTGAGCCTTTATGTTCTCC 19 V_SOX9_B1_M00410 TRANSFAC + 84743804 84743817 8.0E-06 GAAAATCAATGGAA 14 V_GR_Q6_02_M01836 TRANSFAC - 84743776 84743788 3.0E-06 CTTTATGTTCTCC 13 V_S8_01_M00099 TRANSFAC - 84743486 84743501 4.0E-06 TCGAGCCAATTAGTGT 16 V_NFYC_Q5_M02107 TRANSFAC - 84743486 84743499 2.0E-06 GAGCCAATTAGTGT 14 V_TAL1_01_M01591 TRANSFAC - 84743295 84743307 1.0E-05 ATTTCTTTTCTGT 13 V_NKX11_01_M01334 TRANSFAC + 84743485 84743501 1.0E-05 GACACTAATTGGCTCGA 17 V_EFC_Q6_M00626 TRANSFAC - 84743546 84743559 4.0E-06 CGTCGCCAGGCAAC 14 V_OG2_02_M01441 TRANSFAC - 84743484 84743500 7.0E-06 CGAGCCAATTAGTGTCT 17 V_SOX5_04_M02910 TRANSFAC + 84743356 84743370 7.0E-06 AAACAGAATTAACCA 15 V_NANOG_02_M01247 TRANSFAC + 84743801 84743820 9.0E-06 AGAGAAAATCAATGGAAAGG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.