Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ACAN Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 176 aggrecan chr15 + 89341673 - 89347173 89346673 Transcription Factor Binding Sites   Download all TFBS in the ACAN promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 89343438 89343448 2.0E-06 AATGAGTCATG 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 89343438 89343448 1.0E-06 CATGACTCATT 11 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 89343457 89343465 9.0E-06 GTCATAAAA 9 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 89345658 89345668 8.0E-06 TCTGAAGGTCA 11 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 89343461 89343476 2.0E-06 TAAAAGCACATAAATG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 89343461 89343476 1.0E-06 TAAAAGCACATAAATG 16 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 89343456 89343465 6.0E-06 TGTCATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 89343457 89343465 9.0E-06 GTCATAAAA 9 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 89345653 89345668 9.0E-06 AGAACTCTGAAGGTCA 16 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 89345660 89345669 6.0E-06 TGAAGGTCAC 10 JDP2_bZIP_full_dimeric_9_1 SELEX + 89343439 89343447 4.0E-06 ATGAGTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 89343439 89343447 2.0E-06 ATGACTCAT 9 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 89343457 89343466 8.0E-06 GTCATAAAAG 10 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 89343457 89343465 7.0E-06 GTCATAAAA 9 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 89343457 89343465 6.0E-06 GTCATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 89343457 89343465 6.0E-06 GTCATAAAA 9 V_BACH2_01_M00490 TRANSFAC + 89343438 89343448 9.0E-06 AATGAGTCATG 11 V_ATF5_01_M01295 TRANSFAC - 89343543 89343553 2.0E-06 CTTCTCCCTTT 11 V_NKX29_01_M01352 TRANSFAC + 89343460 89343476 7.0E-06 ATAAAAGCACATAAATG 17 V_ZTA_Q2_M00711 TRANSFAC - 89343440 89343452 2.0E-06 TCATCATGACTCA 13 V_STAT4_Q4_M01666 TRANSFAC + 89343486 89343499 2.0E-06 TTACCAGAAGCACA 14 V_AP1_Q6_M00174 TRANSFAC - 89343438 89343448 4.0E-06 CATGACTCATT 11 V_BACH1_01_M00495 TRANSFAC + 89343436 89343450 0.0E+00 CAAATGAGTCATGAT 15 V_AP1_Q6_01_M00925 TRANSFAC - 89343439 89343447 4.0E-06 ATGACTCAT 9 V_JUNDM2_04_M02876 TRANSFAC - 89343436 89343451 7.0E-06 CATCATGACTCATTTG 16 V_AP1_C_M00199 TRANSFAC + 89343439 89343447 8.0E-06 ATGAGTCAT 9 V_PPARA_02_M00518 TRANSFAC + 89343504 89343522 0.0E+00 CCAGGTTATTGAGGTGAGC 19 V_AP1_Q4_01_M00926 TRANSFAC + 89343440 89343447 1.0E-05 TGAGTCAT 8 V_ZSCAN4_04_M02942 TRANSFAC + 89343462 89343477 2.0E-06 AAAAGCACATAAATGT 16 V_NKX3A_02_M01383 TRANSFAC + 89343460 89343476 8.0E-06 ATAAAAGCACATAAATG 17 V_FRA1_Q5_M01267 TRANSFAC + 89343440 89343447 1.0E-05 TGAGTCAT 8 V_MEF2_01_M00006 TRANSFAC - 89350936 89350951 4.0E-06 TTTTAAAAGTAAACTC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.