Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DHODH Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1723 dihydroorotate dehydrogenase (quinone) chr16 + 72037642 - 72043142 72042642 Transcription Factor Binding Sites   Download all TFBS in the DHODH promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 72042236 72042253 3.0E-06 AGTTTATATATTAACATA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 72042236 72042253 7.0E-06 TATGTTAATATATAAACT 18 TBX20_TBX_full_monomeric_11_1 SELEX - 72047437 72047447 7.0E-06 AAGTTGTGAAA 11 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 72042296 72042304 6.0E-06 GTGATAAAA 9 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 72042238 72042250 7.0E-06 GTTAATATATAAA 13 POU2F1_POU_DBD_dimeric_14_1 SELEX + 72042246 72042259 7.0E-06 TTAACATATTCATC 14 NFIA_NFI_full_dimeric_15_1 SELEX + 72047528 72047542 6.0E-06 CTGGCCTGGTGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 72047528 72047542 6.0E-06 CTGGCACCAGGCCAG 15 TBX5_TBX_DBD_dimeric_20_1 SELEX + 72047342 72047361 2.0E-06 AGGTGTTGTCCTCAACACCT 20 TBX5_TBX_DBD_dimeric_20_1 SELEX - 72047342 72047361 2.0E-06 AGGTGTTGAGGACAACACCT 20 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 72042245 72042253 5.0E-06 TATGTTAAT 9 ZNF435_C2H2_full_dimeric_18_1 SELEX - 72042956 72042973 1.0E-06 TGTGTTCACTAAGCACCC 18 POU2F3_POU_DBD_monomeric_9_1 SELEX - 72042245 72042253 6.0E-06 TATGTTAAT 9 SOX8_HMG_full_dimeric_17_1 SELEX - 72042272 72042288 1.0E-05 AATAAATTTTACTGCTG 17 NFIX_NFI_full_dimeric_15_2 SELEX + 72047528 72047542 9.0E-06 CTGGCCTGGTGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 72047528 72047542 8.0E-06 CTGGCACCAGGCCAG 15 POU1F1_POU_DBD_monomeric_14_1 SELEX - 72042242 72042255 3.0E-06 AATATGTTAATATA 14 POU2F2_POU_DBD_monomeric_11_1 SELEX - 72042244 72042254 3.0E-06 ATATGTTAATA 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 72042245 72042253 5.0E-06 TATGTTAAT 9 Pax4_MA0068.1 JASPAR + 72042231 72042260 2.0E-06 GAAAAAGTTTATATATTAACATATTCATCT 30 POU3F3_POU_DBD_monomeric_13_1 SELEX - 72042243 72042255 0.0E+00 AATATGTTAATAT 13 Foxq1_MA0040.1 JASPAR + 72042233 72042243 6.0E-06 AAAAGTTTATA 11 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 72042295 72042305 1.0E-05 AGTGATAAAAA 11 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 72047510 72047523 2.0E-06 TTGGAATATTCAGA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 72047510 72047523 1.0E-06 TCTGAATATTCCAA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX - 72042247 72042258 3.0E-06 ATGAATATGTTA 12 NFATC1_NFAT_full_dimeric_20_1 SELEX - 72040936 72040955 4.0E-06 AATGGAATAAGTTAATTCAG 20 Lhx3_MA0135.1 JASPAR + 72040938 72040950 3.0E-06 GAATTAACTTATT 13 Lhx3_MA0135.1 JASPAR + 72042280 72042292 2.0E-06 AAATTTATTTTTT 13 TBX4_TBX_DBD_dimeric_20_1 SELEX + 72047342 72047361 2.0E-06 AGGTGTTGTCCTCAACACCT 20 TBX4_TBX_DBD_dimeric_20_1 SELEX - 72047342 72047361 1.0E-06 AGGTGTTGAGGACAACACCT 20 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 72039139 72039153 6.0E-06 GAACAACAAGTGGCT 15 POU3F1_POU_DBD_monomeric_12_1 SELEX - 72042243 72042254 2.0E-06 ATATGTTAATAT 12 INSM1_MA0155.1 JASPAR - 72039113 72039124 3.0E-06 TGTAAGGGGGTA 12 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 72040945 72040957 1.0E-05 TTAATGGAATAAG 13 TBX2_TBX_full_dimeric_18_1 SELEX - 72047343 72047360 9.0E-06 GGTGTTGAGGACAACACC 18 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 72047277 72047287 6.0E-06 ACCCTCAGGCA 11 NFIB_NFI_full_dimeric_15_1 SELEX + 72047528 72047542 6.0E-06 CTGGCCTGGTGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 72047528 72047542 7.0E-06 CTGGCACCAGGCCAG 15 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 72042247 72042258 1.0E-05 TAACATATTCAT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 72042247 72042258 3.0E-06 ATGAATATGTTA 12 POU2F1_POU_DBD_monomeric_12_1 SELEX - 72042244 72042255 1.0E-06 AATATGTTAATA 12 NR3C1_MA0113.1 JASPAR + 72039163 72039180 6.0E-06 GGGAGGATACTGTCCTTG 18 POU3F2_POU_DBD_monomeric_12_1 SELEX - 72042243 72042254 3.0E-06 ATATGTTAATAT 12 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 72042243 72042253 9.0E-06 TATGTTAATAT 11 TBX1_TBX_DBD_dimeric_20_1 SELEX + 72042321 72042340 8.0E-06 TGGTGTGAAACACAGTGTTT 20 HNF1A_MA0046.1 JASPAR - 72042238 72042251 2.0E-06 TGTTAATATATAAA 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 72042279 72042292 1.0E-05 AAAAAATAAATTTT 14 V_HOXA9_01_M01351 TRANSFAC + 72042271 72042287 1.0E-06 ACAGCAGTAAAATTTAT 17 V_CEBPG_Q6_M00622 TRANSFAC + 72047433 72047445 7.0E-06 TTGATTTCACAAC 13 V_DBX1_01_M01483 TRANSFAC + 72042280 72042296 8.0E-06 AAATTTATTTTTTAAAG 17 V_FREAC7_01_M00293 TRANSFAC + 72047298 72047313 5.0E-06 TCTGTATAAACACAGA 16 V_OSF2_Q6_M00731 TRANSFAC - 72047594 72047601 1.0E-05 ACCACAAA 8 V_ZFP410_04_M02936 TRANSFAC - 72043056 72043072 4.0E-06 GACCCCCGCCCCTAACA 17 V_GATA2_02_M00348 TRANSFAC + 72039130 72039139 5.0E-06 ACAGATAACA 10 V_SMAD3_Q6_01_M01888 TRANSFAC - 72047292 72047304 2.0E-06 ATACAGACACAGC 13 V_NF1A_Q6_M02103 TRANSFAC + 72047528 72047543 2.0E-06 CTGGCCTGGTGCCAGA 16 V_HMGIY_Q3_M01010 TRANSFAC - 72042208 72042222 1.0E-06 AGTTGATTTTTCTTA 15 V_HMGIY_Q3_M01010 TRANSFAC + 72042281 72042295 7.0E-06 AATTTATTTTTTAAA 15 V_BCL6_01_M01183 TRANSFAC + 72043041 72043056 1.0E-06 TTTTAGGTAAAGTTTT 16 V_EOMES_03_M02747 TRANSFAC - 72047434 72047450 8.0E-06 GGAAAGTTGTGAAATCA 17 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 72043076 72043088 4.0E-06 AAGAACTTTTCAC 13 V_OCT1_01_M00135 TRANSFAC - 72042240 72042258 1.0E-06 ATGAATATGTTAATATATA 19 V_NKX25_Q6_M02108 TRANSFAC + 72047373 72047383 7.0E-06 CACACTTGCAG 11 V_FOXO3A_Q1_M01137 TRANSFAC - 72042281 72042292 3.0E-06 AAAAAATAAATT 12 V_POU3F2_02_M00464 TRANSFAC - 72042245 72042254 1.0E-06 ATATGTTAAT 10 V_MAF_Q6_M00648 TRANSFAC + 72047260 72047275 4.0E-06 TAGAAGGAAGTGCGGG 16 V_FOXJ1_03_M02750 TRANSFAC + 72047300 72047315 6.0E-06 TGTATAAACACAGATG 16 V_HFH4_01_M00742 TRANSFAC + 72042233 72042245 7.0E-06 AAAAGTTTATATA 13 V_TR4_Q2_M01725 TRANSFAC + 72047331 72047341 1.0E-06 CCTGACCTCTG 11 V_BRN2_01_M00145 TRANSFAC - 72047386 72047401 1.0E-06 CACATTCTAAATGAGC 16 V_NR3C1_01_M02219 TRANSFAC + 72039163 72039180 6.0E-06 GGGAGGATACTGTCCTTG 18 V_CEBPB_01_M00109 TRANSFAC - 72047434 72047447 3.0E-06 AAGTTGTGAAATCA 14 V_OCT2_02_M01761 TRANSFAC + 72047512 72047521 3.0E-06 GGAATATTCA 10 V_OCT2_02_M01761 TRANSFAC - 72047512 72047521 1.0E-06 TGAATATTCC 10 V_NKX62_Q2_M00489 TRANSFAC - 72042279 72042290 7.0E-06 AAAATAAATTTT 12 V_BARBIE_01_M00238 TRANSFAC - 72042252 72042266 1.0E-05 ATATAAAGATGAATA 15 V_ELF4_04_M02850 TRANSFAC + 72042192 72042208 5.0E-06 TTTCCTTAAAAAACCTT 17 V_ELF4_04_M02850 TRANSFAC - 72042234 72042250 2.0E-06 GTTAATATATAAACTTT 17 V_ELF4_04_M02850 TRANSFAC - 72042279 72042295 0.0E+00 TTTAAAAAATAAATTTT 17 V_ELF4_04_M02850 TRANSFAC - 72042280 72042296 0.0E+00 CTTTAAAAAATAAATTT 17 V_ELF4_04_M02850 TRANSFAC - 72042281 72042297 2.0E-06 ACTTTAAAAAATAAATT 17 V_ETV7_01_M02071 TRANSFAC - 72042814 72042823 3.0E-06 CCCGGAAACA 10 V_POU3F2_01_M00463 TRANSFAC + 72040936 72040949 3.0E-06 CTGAATTAACTTAT 14 V_POU3F2_01_M00463 TRANSFAC - 72042245 72042258 1.0E-06 ATGAATATGTTAAT 14 V_OCT1_02_M00136 TRANSFAC + 72047511 72047525 7.0E-06 TGGAATATTCAGATG 15 V_ZFP105_03_M02827 TRANSFAC - 72042281 72042295 4.0E-06 TTTAAAAAATAAATT 15 V_GATA3_05_M02859 TRANSFAC - 72042292 72042313 1.0E-06 TTGTACAGTTTTTATCACTTTA 22 V_HNF1_Q6_M00790 TRANSFAC - 72039144 72039161 1.0E-05 TGGTTACTGAACAACAAG 18 V_HNF1_Q6_M00790 TRANSFAC - 72042235 72042252 5.0E-06 ATGTTAATATATAAACTT 18 V_NKX61_01_M00424 TRANSFAC - 72040948 72040960 7.0E-06 ACTTTAATGGAAT 13 V_AMEF2_Q6_M00403 TRANSFAC - 72042233 72042250 8.0E-06 GTTAATATATAAACTTTT 18 V_HOXB9_01_M01426 TRANSFAC + 72042271 72042286 6.0E-06 ACAGCAGTAAAATTTA 16 V_RXRA_04_M02895 TRANSFAC + 72042230 72042245 5.0E-06 TGAAAAAGTTTATATA 16 V_RFX4_04_M02893 TRANSFAC - 72039152 72039166 5.0E-06 TCCCATGGTTACTGA 15 V_RFX4_04_M02893 TRANSFAC - 72047417 72047431 4.0E-06 AATCCTGGTTACCGG 15 V_HNF3_Q6_M00791 TRANSFAC + 72042306 72042318 6.0E-06 CTGTACAAATATT 13 V_HNF1_Q6_01_M01011 TRANSFAC + 72042234 72042254 1.0E-06 AAAGTTTATATATTAACATAT 21 V_HNF1_Q6_01_M01011 TRANSFAC - 72042234 72042254 3.0E-06 ATATGTTAATATATAAACTTT 21 V_HNF1_Q6_01_M01011 TRANSFAC - 72042278 72042298 6.0E-06 CACTTTAAAAAATAAATTTTA 21 V_CDX1_01_M01373 TRANSFAC + 72042270 72042285 9.0E-06 CACAGCAGTAAAATTT 16 V_OCT1_04_M00138 TRANSFAC - 72042238 72042260 0.0E+00 AGATGAATATGTTAATATATAAA 23 V_OCT1_04_M00138 TRANSFAC - 72042244 72042266 0.0E+00 ATATAAAGATGAATATGTTAATA 23 V_BBX_04_M02843 TRANSFAC - 72042239 72042255 6.0E-06 AATATGTTAATATATAA 17 V_HFH1_01_M00129 TRANSFAC + 72042233 72042244 2.0E-06 AAAAGTTTATAT 12 V_CDC5_01_M00478 TRANSFAC + 72040938 72040949 8.0E-06 GAATTAACTTAT 12 V_NCX_02_M01420 TRANSFAC + 72042239 72042255 5.0E-06 TTATATATTAACATATT 17 V_NCX_02_M01420 TRANSFAC - 72042240 72042256 9.0E-06 GAATATGTTAATATATA 17 V_SMAD4_Q6_M00733 TRANSFAC + 72042666 72042680 3.0E-06 GGCGTGGAGACACCT 15 V_POU6F1_01_M00465 TRANSFAC + 72042277 72042287 5.0E-06 GTAAAATTTAT 11 V_TBP_06_M02814 TRANSFAC - 72042234 72042249 1.0E-06 TTAATATATAAACTTT 16 V_TBP_06_M02814 TRANSFAC + 72042236 72042251 3.0E-06 AGTTTATATATTAACA 16 V_TBP_06_M02814 TRANSFAC - 72042236 72042251 5.0E-06 TGTTAATATATAAACT 16 V_TBP_06_M02814 TRANSFAC + 72042238 72042253 7.0E-06 TTTATATATTAACATA 16 V_SIX2_01_M01433 TRANSFAC - 72039105 72039121 7.0E-06 AAGGGGGTATCTTGATA 17 V_INSM1_01_M02268 TRANSFAC - 72039113 72039124 3.0E-06 TGTAAGGGGGTA 12 V_ISGF4G_04_M02875 TRANSFAC + 72042300 72042313 6.0E-06 TAAAAACTGTACAA 14 V_AP1_Q2_01_M00924 TRANSFAC + 72047400 72047411 8.0E-06 TGACTCAGACTT 12 V_BCL6B_04_M02844 TRANSFAC - 72043056 72043071 0.0E+00 ACCCCCGCCCCTAACA 16 V_HFH8_01_M00294 TRANSFAC - 72047300 72047312 2.0E-06 CTGTGTTTATACA 13 V_GATA1_05_M00346 TRANSFAC + 72039130 72039139 1.0E-06 ACAGATAACA 10 V_MTF1_06_M02882 TRANSFAC + 72042205 72042218 9.0E-06 CCTTAAGAAAAATC 14 V_AP3_Q6_M00690 TRANSFAC - 72047256 72047263 5.0E-06 TCTAAATT 8 V_BRN4_01_M01473 TRANSFAC + 72040935 72040951 7.0E-06 GCTGAATTAACTTATTC 17 V_OCT2_01_M01368 TRANSFAC - 72042241 72042256 1.0E-05 GAATATGTTAATATAT 16 V_HNF1_01_M00132 TRANSFAC - 72039146 72039160 9.0E-06 GGTTACTGAACAACA 15 V_HNF1_01_M00132 TRANSFAC - 72042237 72042251 2.0E-06 TGTTAATATATAAAC 15 V_FOXJ3_06_M02855 TRANSFAC - 72042331 72042347 1.0E-05 AGCATCAAAACACTGTG 17 V_T3R_Q6_M00963 TRANSFAC + 72039171 72039179 3.0E-06 ACTGTCCTT 9 V_NRSF_01_M00256 TRANSFAC + 72039182 72039202 7.0E-06 TTCAGCAACTCAGTTAGACGC 21 V_FOX_Q2_M00809 TRANSFAC + 72042237 72042249 8.0E-06 GTTTATATATTAA 13 V_PLZF_02_M01075 TRANSFAC - 72042174 72042202 1.0E-06 TTTTAAGGAAATTAAAACATTTTCTTGAG 29 V_PLZF_02_M01075 TRANSFAC - 72042277 72042305 1.0E-06 TTTTTATCACTTTAAAAAATAAATTTTAC 29 V_CEBPB_Q6_M01896 TRANSFAC - 72047435 72047444 7.0E-06 TTGTGAAATC 10 V_MYF6_03_M02781 TRANSFAC - 72039138 72039153 7.0E-06 GAACAACAAGTGGCTG 16 V_GATA2_03_M00349 TRANSFAC + 72039130 72039139 5.0E-06 ACAGATAACA 10 V_SRF_06_M02916 TRANSFAC - 72042279 72042295 2.0E-06 TTTAAAAAATAAATTTT 17 V_SRF_06_M02916 TRANSFAC - 72042280 72042296 0.0E+00 CTTTAAAAAATAAATTT 17 V_SRF_06_M02916 TRANSFAC - 72042281 72042297 4.0E-06 ACTTTAAAAAATAAATT 17 V_ZIC3_04_M02837 TRANSFAC - 72047492 72047506 2.0E-06 CACCCCCGGGGGATT 15 V_ZIC3_04_M02837 TRANSFAC + 72047493 72047507 5.0E-06 ATCCCCCGGGGGTGC 15 V_ZIC1_04_M02835 TRANSFAC + 72047493 72047506 3.0E-06 ATCCCCCGGGGGTG 14 V_SOX18_04_M02905 TRANSFAC + 72040933 72040948 9.0E-06 GTGCTGAATTAACTTA 16 V_SOX18_04_M02905 TRANSFAC + 72047250 72047265 5.0E-06 GGGGTGAATTTAGAAG 16 V_PLAGL1_03_M02786 TRANSFAC + 72042788 72042803 8.0E-06 GTGTGGGCCCCCCTGG 16 V_PIT1_Q6_M00802 TRANSFAC + 72042252 72042269 0.0E+00 TATTCATCTTTATATCAA 18 V_CTF1_01_M01196 TRANSFAC - 72047528 72047541 1.0E-06 TGGCACCAGGCCAG 14 V_MEF2_01_M00006 TRANSFAC - 72042280 72042295 2.0E-06 TTTAAAAAATAAATTT 16 V_SP1_Q2_01_M00933 TRANSFAC - 72043060 72043069 7.0E-06 CCCCGCCCCT 10 V_CEBP_Q2_01_M00912 TRANSFAC + 72047436 72047447 4.0E-06 ATTTCACAACTT 12 V_HOXA10_01_M01464 TRANSFAC + 72042271 72042286 5.0E-06 ACAGCAGTAAAATTTA 16 V_HOXA10_01_M01464 TRANSFAC - 72042278 72042293 4.0E-06 TAAAAAATAAATTTTA 16 V_GATA6_04_M02757 TRANSFAC + 72042292 72042308 1.0E-05 TAAAGTGATAAAAACTG 17 V_ZFP128_04_M02932 TRANSFAC - 72042238 72042251 8.0E-06 TGTTAATATATAAA 14 V_HNF1A_01_M02162 TRANSFAC - 72042238 72042251 2.0E-06 TGTTAATATATAAA 14 TLX1_NFIC_MA0119.1 JASPAR - 72047528 72047541 1.0E-06 TGGCACCAGGCCAG 14 V_ZIC2_04_M02836 TRANSFAC - 72047492 72047506 2.0E-06 CACCCCCGGGGGATT 15 V_ZIC2_04_M02836 TRANSFAC + 72047493 72047507 6.0E-06 ATCCCCCGGGGGTGC 15 V_GLIS2_04_M02863 TRANSFAC - 72042240 72042253 5.0E-06 TATGTTAATATATA 14 V_PAX4_04_M00380 TRANSFAC + 72042232 72042261 6.0E-06 AAAAAGTTTATATATTAACATATTCATCTT 30 V_ZIC1_05_M02939 TRANSFAC + 72042267 72042281 5.0E-06 CAACACAGCAGTAAA 15 V_GATA1_06_M00347 TRANSFAC + 72039130 72039139 5.0E-06 ACAGATAACA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.