Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FAM9C Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 171484 family with sequence similarity 9, member C chrX - 13062417 - 13067917 13062917 Transcription Factor Binding Sites   Download all TFBS in the FAM9C promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NEUROD2_bHLH_full_dimeric_10_1 SELEX + 13066701 13066710 2.0E-06 GCCATATGTT 10 NEUROD2_bHLH_full_dimeric_10_1 SELEX - 13066701 13066710 1.0E-05 AACATATGGC 10 NFIA_NFI_full_dimeric_15_1 SELEX + 13061458 13061472 2.0E-06 TTGGCTCTCCGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 13061458 13061472 2.0E-06 TTGGCGGAGAGCCAA 15 ALX3_homeodomain_full_monomeric_10_1 SELEX - 13064339 13064348 8.0E-06 TCCAATTATA 10 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 13064123 13064136 3.0E-06 AAATTAGCCAATGA 14 SOX2_HMG_full_dimeric_17_1 SELEX - 13064274 13064290 9.0E-06 TGAAAATTACATTGATC 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 13064336 13064352 4.0E-06 GTCTATAATTGGAAACA 17 ZNF435_C2H2_full_dimeric_18_1 SELEX + 13064567 13064584 2.0E-06 ATTCTTTTCAGAACACCA 18 GRHL1_CP2_full_dimeric_12_1 SELEX + 13064760 13064771 4.0E-06 GAAACAGGTTTT 12 GRHL1_CP2_full_dimeric_12_1 SELEX - 13064760 13064771 4.0E-06 AAAACCTGTTTC 12 NFIX_NFI_full_dimeric_15_2 SELEX + 13061458 13061472 6.0E-06 TTGGCTCTCCGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 13061458 13061472 6.0E-06 TTGGCGGAGAGCCAA 15 POU1F1_POU_DBD_monomeric_14_1 SELEX - 13064281 13064294 3.0E-06 CATATGAAAATTAC 14 NFYA_MA0060.1 JASPAR + 13064125 13064140 3.0E-06 ATTAGCCAATGAGACA 16 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX + 13064785 13064797 6.0E-06 AGCCTTTAGGGCA 13 POU2F2_POU_DBD_monomeric_11_1 SELEX - 13064283 13064293 8.0E-06 ATATGAAAATT 11 MSX1_homeodomain_full_monomeric_8_1 SELEX + 13061469 13061476 7.0E-06 CCAATTAA 8 TFAP2C_TFAP_full_dimeric_13_1 SELEX + 13064785 13064797 8.0E-06 AGCCTTTAGGGCA 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX - 13064785 13064797 9.0E-06 TGCCCTAAAGGCT 13 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 13064860 13064875 8.0E-06 TAAATTTGCTTAAACA 16 MSX2_homeodomain_DBD_monomeric_8_1 SELEX + 13061469 13061476 7.0E-06 CCAATTAA 8 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 13064860 13064875 7.0E-06 TAAATTTGCTTAAACA 16 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 13061468 13061478 8.0E-06 GCCAATTAAAG 11 POU3F3_POU_DBD_monomeric_13_1 SELEX + 13064862 13064874 3.0E-06 TTTAAGCAAATTT 13 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 13066701 13066710 7.0E-06 GCCATATGTT 10 RAX_homeodomain_DBD_monomeric_10_1 SELEX + 13061468 13061477 8.0E-06 GCCAATTAAA 10 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 13066700 13066711 9.0E-06 GAACATATGGCC 12 SOX14_HMG_DBD_dimeric_13_1 SELEX - 13064276 13064288 1.0E-06 AAAATTACATTGA 13 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 13066701 13066710 9.0E-06 GCCATATGTT 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 13066701 13066710 4.0E-06 AACATATGGC 10 BSX_homeodomain_DBD_monomeric_8_1 SELEX + 13061469 13061476 7.0E-06 CCAATTAA 8 POU3F1_POU_DBD_monomeric_12_1 SELEX - 13064282 13064293 2.0E-06 ATATGAAAATTA 12 TBX2_TBX_full_dimeric_18_1 SELEX + 13066459 13066476 2.0E-06 AGTGTTGAGATTGACACA 18 Atoh1_bHLH_DBD_dimeric_10_1 SELEX + 13066701 13066710 1.0E-05 GCCATATGTT 10 Atoh1_bHLH_DBD_dimeric_10_1 SELEX - 13066701 13066710 2.0E-06 AACATATGGC 10 Msx3_homeodomain_DBD_monomeric_8_1 SELEX + 13061469 13061476 7.0E-06 CCAATTAA 8 FEV_MA0156.1 JASPAR + 13064853 13064860 1.0E-05 CAGGAAAT 8 NFIB_NFI_full_dimeric_15_1 SELEX + 13061458 13061472 3.0E-06 TTGGCTCTCCGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 13061458 13061472 2.0E-06 TTGGCGGAGAGCCAA 15 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 13064785 13064797 3.0E-06 AGCCTTTAGGGCA 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 13064785 13064797 5.0E-06 TGCCCTAAAGGCT 13 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 13066701 13066710 4.0E-06 AACATATGGC 10 LBX2_homeodomain_DBD_monomeric_10_1 SELEX + 13061468 13061477 6.0E-06 GCCAATTAAA 10 GRHL1_CP2_DBD_dimeric_10_1 SELEX + 13064761 13064770 8.0E-06 AAACAGGTTT 10 GRHL1_CP2_DBD_dimeric_10_1 SELEX - 13064761 13064770 7.0E-06 AAACCTGTTT 10 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 13064123 13064136 4.0E-06 AAATTAGCCAATGA 14 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 13064123 13064136 9.0E-06 TCATTGGCTAATTT 14 POU3F2_POU_DBD_monomeric_12_1 SELEX - 13064282 13064293 1.0E-06 ATATGAAAATTA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 13064863 13064874 7.0E-06 TTAAGCAAATTT 12 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 13066701 13066710 1.0E-05 GCCATATGTT 10 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 13066701 13066710 6.0E-06 AACATATGGC 10 OLIG2_bHLH_full_dimeric_10_1 SELEX + 13066701 13066710 7.0E-06 GCCATATGTT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX - 13066701 13066710 5.0E-06 AACATATGGC 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 13066701 13066710 9.0E-06 GCCATATGTT 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 13066701 13066710 5.0E-06 AACATATGGC 10 V_FOXP1_01_M00987 TRANSFAC - 13064340 13064359 7.0E-06 GTGTATGTGTTTCCAATTAT 20 V_FOXP1_01_M00987 TRANSFAC - 13064354 13064373 5.0E-06 TAGTTGGTGTATGTGTGTAT 20 V_FOXP1_01_M00987 TRANSFAC - 13064688 13064707 8.0E-06 ATTTGTGTATTGAGTTGTTT 20 V_CDP_03_M01342 TRANSFAC + 13066492 13066508 9.0E-06 ACTGTTTGATTAGCTAG 17 V_CEBPG_Q6_M00622 TRANSFAC - 13064545 13064557 6.0E-06 CCTATTTAAAATT 13 V_HNF3B_01_M00131 TRANSFAC + 13066489 13066503 4.0E-06 GTAACTGTTTGATTA 15 V_OSF2_Q6_M00731 TRANSFAC + 13066426 13066433 1.0E-05 ACCACAAA 8 V_ATF5_01_M01295 TRANSFAC - 13064208 13064218 8.0E-06 CTTCTTTCTTA 11 V_NF1_Q6_01_M00806 TRANSFAC - 13061456 13061472 3.0E-06 TTGGCGGAGAGCCAAAA 17 V_NFY_Q6_M00185 TRANSFAC + 13064127 13064137 3.0E-06 TAGCCAATGAG 11 V_NF1A_Q6_M02103 TRANSFAC + 13061458 13061473 2.0E-06 TTGGCTCTCCGCCAAT 16 V_HMGIY_Q3_M01010 TRANSFAC + 13064278 13064292 3.0E-06 AATGTAATTTTCATA 15 V_BCL6_01_M01183 TRANSFAC + 13064604 13064619 9.0E-06 CCTGAAGAAATTCTTT 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 13064616 13064627 8.0E-06 AAAGTTTAAAAG 12 V_STAT_Q6_M00777 TRANSFAC - 13064678 13064690 6.0E-06 TTTCTTTCTGGGA 13 V_SPDEF_04_M02915 TRANSFAC + 13066395 13066410 3.0E-06 CTAAACATCCTACAAT 16 V_LBX2_01_M01401 TRANSFAC - 13061464 13061480 7.0E-06 AGCTTTAATTGGCGGAG 17 V_MAFB_03_M02879 TRANSFAC - 13064535 13064549 1.0E-05 AAATTGCAGAATCCT 15 V_OCT1_Q5_01_M00930 TRANSFAC + 13064282 13064292 1.0E-06 TAATTTTCATA 11 V_MEF2_02_M00231 TRANSFAC + 13064540 13064561 7.0E-06 TCTGCAATTTTAAATAGGCACA 22 V_GATA1_03_M00127 TRANSFAC + 13064482 13064495 5.0E-06 ATGGGGATTACAGA 14 V_SOX11_04_M02899 TRANSFAC - 13066575 13066588 9.0E-06 TAAATTGTTGTGCA 14 V_CUX1_03_M02958 TRANSFAC + 13066492 13066508 9.0E-06 ACTGTTTGATTAGCTAG 17 V_OCT_C_M00210 TRANSFAC + 13064281 13064293 2.0E-06 GTAATTTTCATAT 13 V_NFY_Q6_01_M00775 TRANSFAC + 13064124 13064136 0.0E+00 AATTAGCCAATGA 13 V_CDX_Q5_M00991 TRANSFAC + 13064697 13064714 6.0E-06 AATACACAAATCATTAAG 18 V_HBP1_Q2_M01661 TRANSFAC + 13066659 13066667 8.0E-06 TTCAATGAG 9 V_MEF2A_Q6_M02024 TRANSFAC - 13064546 13064555 9.0E-06 TATTTAAAAT 10 V_AR_03_M00956 TRANSFAC - 13064570 13064596 9.0E-06 AACTTGGACACTTGGTGTTCTGAAAAG 27 V_TAL1_GATA1_01_M02243 TRANSFAC - 13064639 13064656 1.0E-06 TTGGGAAAAAGAGATAAA 18 V_NFY_C_M00209 TRANSFAC - 13064125 13064138 4.0E-06 TCTCATTGGCTAAT 14 V_ETS_Q4_M00771 TRANSFAC - 13064853 13064864 9.0E-06 AAACATTTCCTG 12 V_COMP1_01_M00057 TRANSFAC + 13064838 13064861 5.0E-06 TATCTACAAAGACCACAGGAAATG 24 V_SOX13_03_M02797 TRANSFAC + 13066575 13066590 7.0E-06 TGCACAACAATTTATC 16 V_CEBPE_Q6_M01868 TRANSFAC - 13064538 13064551 1.0E-06 TAAAATTGCAGAAT 14 V_ARX_01_M01423 TRANSFAC + 13061464 13061480 5.0E-06 CTCCGCCAATTAAAGCT 17 V_TEF_Q6_M00672 TRANSFAC + 13064859 13064870 4.0E-06 ATGTTTAAGCAA 12 V_RSRFC4_Q2_M00407 TRANSFAC - 13061438 13061454 8.0E-06 AGTCTACAAATAGTACG 17 V_IRX4_01_M01410 TRANSFAC - 13066616 13066632 7.0E-06 ATCCAACATGTAACATC 17 V_IRX4_01_M01410 TRANSFAC + 13066617 13066633 6.0E-06 ATGTTACATGTTGGATT 17 V_ARID3A_02_M02839 TRANSFAC - 13064283 13064297 5.0E-06 AAGCATATGAAAATT 15 V_OCT1_05_M00161 TRANSFAC + 13064281 13064294 1.0E-06 GTAATTTTCATATG 14 V_MEF2_03_M00232 TRANSFAC - 13064730 13064751 9.0E-06 AGAGTTGCTTCAAATAGACTTC 22 V_TATA_C_M00216 TRANSFAC + 13064411 13064420 3.0E-06 TCTTTAAAAG 10 V_OCT1_04_M00138 TRANSFAC + 13064414 13064436 5.0E-06 TTAAAAGAATGTCAAATCAAGGA 23 V_RAX_01_M01389 TRANSFAC - 13061464 13061480 2.0E-06 AGCTTTAATTGGCGGAG 17 Tal1_Gata1_MA0140.1 JASPAR - 13064639 13064656 1.0E-06 TTGGGAAAAAGAGATAAA 18 V_HBP1_03_M02762 TRANSFAC + 13066656 13066671 3.0E-06 ACATTCAATGAGTGTT 16 V_HMX1_02_M01481 TRANSFAC + 13061465 13061481 7.0E-06 TCCGCCAATTAAAGCTT 17 V_SOX12_04_M02900 TRANSFAC + 13064696 13064711 6.0E-06 CAATACACAAATCATT 16 V_MEF2_04_M00233 TRANSFAC - 13064730 13064751 1.0E-06 AGAGTTGCTTCAAATAGACTTC 22 V_TCF7_03_M02817 TRANSFAC - 13064612 13064628 9.0E-06 CAAAGTTTAAAAGAATT 17 V_IRX3_01_M01318 TRANSFAC - 13066616 13066632 8.0E-06 ATCCAACATGTAACATC 17 V_IRX3_01_M01318 TRANSFAC + 13066617 13066633 1.0E-06 ATGTTACATGTTGGATT 17 V_ARX_02_M02945 TRANSFAC + 13061464 13061480 5.0E-06 CTCCGCCAATTAAAGCT 17 V_OCT_Q6_M00795 TRANSFAC + 13064282 13064292 1.0E-06 TAATTTTCATA 11 V_IRX5_01_M01472 TRANSFAC - 13066616 13066632 8.0E-06 ATCCAACATGTAACATC 17 V_IRX5_01_M01472 TRANSFAC + 13066617 13066633 1.0E-06 ATGTTACATGTTGGATT 17 V_GATA4_Q3_M00632 TRANSFAC + 13064210 13064221 7.0E-06 AGAAAGAAGACA 12 V_EN2_01_M01455 TRANSFAC - 13061464 13061480 8.0E-06 AGCTTTAATTGGCGGAG 17 V_IRX3_02_M01485 TRANSFAC + 13066617 13066633 2.0E-06 ATGTTACATGTTGGATT 17 V_CAAT_01_M00254 TRANSFAC + 13064125 13064136 0.0E+00 ATTAGCCAATGA 12 V_ALPHACP1_01_M00687 TRANSFAC + 13064127 13064137 1.0E-06 TAGCCAATGAG 11 V_MTF1_06_M02882 TRANSFAC + 13066744 13066757 3.0E-06 AAATTTGAAAACTA 14 V_AP3_Q6_M00690 TRANSFAC + 13066741 13066748 5.0E-06 TCTAAATT 8 V_CEBPA_01_M00116 TRANSFAC - 13064860 13064873 5.0E-06 AATTTGCTTAAACA 14 V_OCT1_Q6_M00195 TRANSFAC - 13064281 13064295 4.0E-06 GCATATGAAAATTAC 15 V_ZSCAN4_04_M02942 TRANSFAC + 13066681 13066696 4.0E-06 CCAGGCACATTATATA 16 V_NFY_01_M00287 TRANSFAC + 13064125 13064140 4.0E-06 ATTAGCCAATGAGACA 16 V_PITX2_Q2_M00482 TRANSFAC - 13064483 13064493 7.0E-06 TGTAATCCCCA 11 V_PLZF_02_M01075 TRANSFAC + 13064403 13064431 2.0E-06 CTCATTTTTCTTTAAAAGAATGTCAAATC 29 V_ETS1_B_M00339 TRANSFAC + 13064852 13064866 2.0E-06 ACAGGAAATGTTTAA 15 V_IRX2_01_M01405 TRANSFAC - 13066616 13066632 9.0E-06 ATCCAACATGTAACATC 17 V_IRX2_01_M01405 TRANSFAC + 13066617 13066633 1.0E-06 ATGTTACATGTTGGATT 17 V_IRF1_Q6_01_M01881 TRANSFAC - 13064524 13064537 9.0E-06 CCTTTTCAGTTTGT 14 V_SOX8_03_M02808 TRANSFAC - 13066575 13066591 6.0E-06 GGATAAATTGTTGTGCA 17 V_SRF_06_M02916 TRANSFAC - 13064404 13064420 5.0E-06 CTTTTAAAGAAAAATGA 17 V_SOX18_04_M02905 TRANSFAC + 13066739 13066754 5.0E-06 ATTCTAAATTTGAAAA 16 V_SMAD3_Q6_M00701 TRANSFAC - 13066564 13066572 3.0E-06 TGTCTGTCT 9 V_SOX1_03_M02802 TRANSFAC + 13064386 13064401 5.0E-06 TAAGAATTCAATGCTG 16 V_NKX12_01_M01427 TRANSFAC + 13061464 13061480 9.0E-06 CTCCGCCAATTAAAGCT 17 V_PR_02_M00957 TRANSFAC - 13064570 13064596 5.0E-06 AACTTGGACACTTGGTGTTCTGAAAAG 27 V_DR3_Q4_M00966 TRANSFAC + 13066527 13066547 4.0E-06 AATCTCCTTTTTGCACTCTGT 21 V_CTF1_01_M01196 TRANSFAC + 13061459 13061472 6.0E-06 TGGCTCTCCGCCAA 14 V_MEF2A_05_M01301 TRANSFAC - 13064547 13064558 7.0E-06 GCCTATTTAAAA 12 V_SOX5_07_M02909 TRANSFAC - 13066575 13066591 0.0E+00 GGATAAATTGTTGTGCA 17 V_IRXB3_01_M01377 TRANSFAC + 13066617 13066633 3.0E-06 ATGTTACATGTTGGATT 17 TLX1_NFIC_MA0119.1 JASPAR + 13061459 13061472 6.0E-06 TGGCTCTCCGCCAA 14 V_FEV_01_M02269 TRANSFAC + 13064853 13064860 1.0E-05 CAGGAAAT 8 V_NF1_Q6_M00193 TRANSFAC - 13061457 13061474 6.0E-06 AATTGGCGGAGAGCCAAA 18 V_NANOG_02_M01247 TRANSFAC + 13064202 13064221 8.0E-06 TAACATTAAGAAAGAAGACA 20 V_OCT4_01_M01125 TRANSFAC - 13066740 13066754 8.0E-06 TTTTCAAATTTAGAA 15 V_TCF4_01_M01705 TRANSFAC - 13064298 13064306 5.0E-06 TCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.