Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SPACA4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 171169 sperm acrosome associated 4 chr19 + 49104999 - 49110499 49109999 Transcription Factor Binding Sites   Download all TFBS in the SPACA4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 49112186 49112204 5.0E-06 CACCCAGCAGAGGTCAGTA 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 49112496 49112508 3.0E-06 GCAAATAATAACA 13 GABPA_MA0062.2 JASPAR - 49108400 49108410 1.0E-06 CCGGAAGTGAA 11 SOX10_HMG_full_dimeric_15_3 SELEX - 49108452 49108466 1.0E-06 CTAAATGGCAGTCAT 15 IRF7_IRF_DBD_dimeric_14_1 SELEX - 49112503 49112516 1.0E-05 AAGAAACTGCAAAT 14 SPIC_ETS_full_monomeric_14_1 SELEX + 49105028 49105041 2.0E-06 AAAAAAAGGAAGTG 14 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX + 49112475 49112492 6.0E-06 GTGACCCTGTGAGGTAGG 18 SOX21_HMG_DBD_dimeric_13_2 SELEX - 49108453 49108465 1.0E-06 TAAATGGCAGTCA 13 SRY_HMG_DBD_dimeric_13_2 SELEX + 49108453 49108465 3.0E-06 TGACTGCCATTTA 13 SOX9_HMG_full_dimeric_17_3 SELEX - 49108451 49108467 0.0E+00 ACTAAATGGCAGTCATT 17 SOX8_HMG_full_dimeric_17_1 SELEX - 49108451 49108467 5.0E-06 ACTAAATGGCAGTCATT 17 HLF_bZIP_full_dimeric_12_1 SELEX + 49107369 49107380 7.0E-06 ACTTATATAATC 12 SOX7_HMG_full_dimeric_17_2 SELEX - 49108451 49108467 1.0E-06 ACTAAATGGCAGTCATT 17 SOX15_HMG_full_dimeric_15_3 SELEX + 49108452 49108466 2.0E-06 ATGACTGCCATTTAG 15 SPIB_ETS_DBD_monomeric_14_1 SELEX + 49105028 49105041 0.0E+00 AAAAAAAGGAAGTG 14 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX + 49112475 49112492 5.0E-06 GTGACCCTGTGAGGTAGG 18 Sox17_HMG_DBD_dimeric_15_2 SELEX + 49108452 49108466 8.0E-06 ATGACTGCCATTTAG 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 49108452 49108466 2.0E-06 CTAAATGGCAGTCAT 15 SOX2_HMG_full_dimeric_15_1 SELEX + 49108452 49108466 5.0E-06 ATGACTGCCATTTAG 15 SOX2_HMG_full_dimeric_15_1 SELEX - 49108452 49108466 4.0E-06 CTAAATGGCAGTCAT 15 HIC2_C2H2_DBD_monomeric_9_1 SELEX - 49112107 49112115 4.0E-06 ATGCCCACT 9 HIC2_C2H2_DBD_monomeric_9_1 SELEX + 49113776 49113784 1.0E-05 ATGCCCACC 9 SRY_MA0084.1 JASPAR - 49108423 49108431 7.0E-06 TAAAACAAT 9 SOX14_HMG_DBD_dimeric_15_1 SELEX + 49108452 49108466 3.0E-06 ATGACTGCCATTTAG 15 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 49112227 49112242 0.0E+00 CTCCCACAATGCACCC 16 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 49112445 49112459 7.0E-06 GGCCACACCCCTCTC 15 Stat3_MA0144.1 JASPAR - 49108443 49108452 7.0E-06 TTCTAGGAAG 10 SOX18_HMG_full_dimeric_15_3 SELEX - 49108452 49108466 4.0E-06 CTAAATGGCAGTCAT 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 49108451 49108467 2.0E-06 ACTAAATGGCAGTCATT 17 SPI1_ETS_full_monomeric_14_1 SELEX + 49105028 49105041 0.0E+00 AAAAAAAGGAAGTG 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 49105022 49105034 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 49112496 49112508 9.0E-06 GCAAATAATAACA 13 Sox1_HMG_DBD_dimeric_15_2 SELEX + 49108452 49108466 3.0E-06 ATGACTGCCATTTAG 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 49108452 49108466 3.0E-06 CTAAATGGCAGTCAT 15 ZNF784_C2H2_full_monomeric_10_1 SELEX - 49112486 49112495 3.0E-06 GCACCTACCT 10 V_MINI20_B_M00324 TRANSFAC + 49113880 49113900 1.0E-06 CACTGCCCCCATGCCAGGGGA 21 V_FOXP1_01_M00987 TRANSFAC + 49112501 49112520 0.0E+00 TTATTTGCAGTTTCTTTCTT 20 V_SPI1_01_M01203 TRANSFAC + 49105028 49105044 0.0E+00 AAAAAAAGGAAGTGATA 17 V_TCF3_01_M01594 TRANSFAC - 49105024 49105036 5.0E-06 CCTTTTTTTTTTT 13 V_BCL6_Q3_01_M02085 TRANSFAC + 49108443 49108452 2.0E-06 CTTCCTAGAA 10 V_FLI1_Q6_M01208 TRANSFAC + 49105033 49105043 5.0E-06 AAGGAAGTGAT 11 V_BCL6_01_M01183 TRANSFAC - 49105024 49105039 7.0E-06 CTTCCTTTTTTTTTTT 16 V_FOXJ1_04_M02854 TRANSFAC - 49112492 49112506 2.0E-06 AAATAATAACAGCAC 15 V_ZFP740_03_M02834 TRANSFAC + 49113777 49113792 8.0E-06 TGCCCACCCCCACCTC 16 V_GKLF_02_M01588 TRANSFAC + 49112446 49112457 4.0E-06 GCCACACCCCTC 12 V_TR4_Q2_M01725 TRANSFAC + 49107273 49107283 3.0E-06 CCTGACCTCTC 11 V_TR4_Q2_M01725 TRANSFAC + 49112187 49112197 7.0E-06 ACTGACCTCTG 11 V_AFP1_Q6_M00616 TRANSFAC - 49112492 49112502 5.0E-06 AATAACAGCAC 11 V_HEN1_01_M00068 TRANSFAC + 49108429 49108450 1.0E-06 TTAAGACCCAGCTGCTTCCTAG 22 V_HEN1_01_M00068 TRANSFAC - 49108429 49108450 4.0E-06 CTAGGAAGCAGCTGGGTCTTAA 22 V_PU1_Q4_M01172 TRANSFAC - 49105029 49105047 0.0E+00 CTCTATCACTTCCTTTTTT 19 V_ZFP691_03_M02833 TRANSFAC + 49108507 49108523 8.0E-06 CCTGCAGTGCTCATCTG 17 V_TCFAP2E_04_M02926 TRANSFAC + 49105017 49105030 2.0E-06 GTCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 49105019 49105032 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 49105020 49105033 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 49105021 49105034 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 49105022 49105035 4.0E-06 AAAAAAAAAAAAAG 14 V_ELF4_04_M02850 TRANSFAC + 49105017 49105033 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 49105018 49105034 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ZFP105_03_M02827 TRANSFAC + 49105019 49105033 1.0E-06 CTCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 49105020 49105034 2.0E-06 TCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 49105021 49105035 1.0E-06 CAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 49105022 49105036 2.0E-06 AAAAAAAAAAAAAGG 15 V_ZFP105_03_M02827 TRANSFAC + 49105023 49105037 1.0E-06 AAAAAAAAAAAAGGA 15 V_ZFP105_03_M02827 TRANSFAC - 49112495 49112509 7.0E-06 TGCAAATAATAACAG 15 V_HIC1_06_M02867 TRANSFAC - 49107305 49107320 3.0E-06 AGTTGTGCCCATTCTA 16 V_AP1_Q4_M00188 TRANSFAC - 49108461 49108471 9.0E-06 ACTGACTAAAT 11 V_FOXK1_04_M02856 TRANSFAC - 49112493 49112507 0.0E+00 CAAATAATAACAGCA 15 V_IK1_01_M00086 TRANSFAC + 49113768 49113780 1.0E-06 CCTTGGGAATGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 49112453 49112466 2.0E-06 TAGGGAGGAGAGGG 14 V_SFPI1_04_M02896 TRANSFAC - 49112139 49112152 3.0E-06 CCAATTAGAGAACC 14 V_ELF5_01_M01197 TRANSFAC + 49105031 49105041 6.0E-06 AAAAGGAAGTG 11 V_OCT1_04_M00138 TRANSFAC - 49112496 49112518 0.0E+00 GAAAGAAACTGCAAATAATAACA 23 V_ERR1_Q3_M01841 TRANSFAC + 49112333 49112347 9.0E-06 CCATGACATAGAGGG 15 V_SPIB_01_M01204 TRANSFAC + 49105028 49105044 0.0E+00 AAAAAAAGGAAGTGATA 17 V_TEL2_Q6_M00678 TRANSFAC + 49108401 49108410 9.0E-06 TCACTTCCGG 10 V_SOX11_03_M02795 TRANSFAC + 49112250 49112266 1.0E-06 CCTAAAACAAAGACTTA 17 V_MINI19_B_M00323 TRANSFAC + 49113880 49113900 4.0E-06 CACTGCCCCCATGCCAGGGGA 21 V_MTF1_06_M02882 TRANSFAC + 49105021 49105034 8.0E-06 CAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 49105022 49105035 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC + 49105023 49105036 6.0E-06 AAAAAAAAAAAAGG 14 V_NFYC_Q5_M02107 TRANSFAC - 49112142 49112155 3.0E-06 CTGCCAATTAGAGA 14 V_HEN1_02_M00058 TRANSFAC + 49108429 49108450 2.0E-06 TTAAGACCCAGCTGCTTCCTAG 22 V_HEN1_02_M00058 TRANSFAC - 49108429 49108450 1.0E-06 CTAGGAAGCAGCTGGGTCTTAA 22 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 49112184 49112198 1.0E-06 GCAGAGGTCAGTAGC 15 V_SRF_06_M02916 TRANSFAC + 49105017 49105033 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 49105018 49105034 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 49105019 49105035 1.0E-06 CTCAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 49105020 49105036 3.0E-06 TCAAAAAAAAAAAAAGG 17 V_SRF_06_M02916 TRANSFAC + 49105021 49105037 0.0E+00 CAAAAAAAAAAAAAGGA 17 V_SRF_06_M02916 TRANSFAC + 49105022 49105038 1.0E-06 AAAAAAAAAAAAAGGAA 17 V_SOX2_Q6_M01272 TRANSFAC - 49112251 49112266 6.0E-06 TAAGTCTTTGTTTTAG 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 49113777 49113790 7.0E-06 GGTGGGGGTGGGCA 14 V_TCF3_05_M02920 TRANSFAC + 49105018 49105032 4.0E-06 TCTCAAAAAAAAAAA 15 V_ATATA_B_M00311 TRANSFAC - 49107369 49107378 4.0E-06 TTATATAAGT 10 V_STAT1_05_M01260 TRANSFAC - 49108434 49108455 8.0E-06 TCATTCTAGGAAGCAGCTGGGT 22 V_NANOG_02_M01247 TRANSFAC + 49105022 49105041 4.0E-06 AAAAAAAAAAAAAGGAAGTG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.