Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MIER3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 166968 mesoderm induction early response 1, family member 3 chr5 - 56247454 - 56252954 56247954 Transcription Factor Binding Sites   Download all TFBS in the MIER3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 56247299 56247312 1.0E-06 GGGGTTAAAGGGCA 14 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 56247299 56247309 1.0E-05 GTTAAAGGGCA 11 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 56247299 56247312 1.0E-06 GGGGTTAAAGGGCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 56247299 56247312 3.0E-06 GGGGTTAAAGGGCA 14 EWSR1-FLI1_MA0149.1 JASPAR - 56247220 56247237 1.0E-06 TGGAGGAAGGAAGGCTGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 56247224 56247241 6.0E-06 GGGCTGGAGGAAGGAAGG 18 NFYA_MA0060.1 JASPAR + 56247985 56248000 8.0E-06 CTGAGCCAATCGCAGC 16 GCM1_GCM_full_dimeric_16_1 SELEX + 56247928 56247943 2.0E-06 ATATTGGTACCTTTAG 16 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 56247159 56247174 1.0E-05 CACCGCCCCCTCCCCC 16 ONECUT1_CUT_full_monomeric_14_1 SELEX + 56246336 56246349 4.0E-06 TAAAAATCAATGAA 14 SP1_MA0079.2 JASPAR + 56247165 56247174 3.0E-06 CCCCTCCCCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 56246336 56246349 1.0E-06 TAAAAATCAATGAA 14 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 56247298 56247312 2.0E-06 GGGGTTAAAGGGCAG 15 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 56247299 56247312 1.0E-06 GGGGTTAAAGGGCA 14 YY2_C2H2_full_monomeric_11_1 SELEX + 56247922 56247932 2.0E-06 TCCGCCATATT 11 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX - 56247299 56247312 5.0E-06 GGGGTTAAAGGGCA 14 MAFK_bZIP_full_monomeric_12_1 SELEX - 56246745 56246756 8.0E-06 AAACTTGCTGAG 12 NHLH1_bHLH_full_dimeric_10_1 SELEX + 56246579 56246588 9.0E-06 CGCAGCTGCC 10 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 56247299 56247312 1.0E-06 GGGGTTAAAGGGCA 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 56246336 56246349 1.0E-06 TAAAAATCAATGAA 14 Zfx_MA0146.1 JASPAR + 56247698 56247711 7.0E-06 GCCGCCGCGGCCTA 14 V_AP2ALPHA_Q6_M01857 TRANSFAC + 56248085 56248095 6.0E-06 CGCCCCCGGCC 11 V_HNF3B_01_M00131 TRANSFAC - 56246437 56246451 2.0E-06 TGTCCTATTTTCTTA 15 V_NFKB_C_M00208 TRANSFAC - 56247343 56247354 8.0E-06 CGGGACTCCCCA 12 V_STAT5A_Q6_M01890 TRANSFAC + 56247354 56247366 9.0E-06 GCTCTTCTGAGAA 13 V_ZFX_01_M01593 TRANSFAC - 56247699 56247714 1.0E-06 GACTAGGCCGCGGCGG 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 56248193 56248204 1.0E-05 ACTTTACACCAG 12 V_STAT_Q6_M00777 TRANSFAC + 56246731 56246743 8.0E-06 GTCGCTTCTTGGA 13 V_MAF_Q6_M00648 TRANSFAC + 56248216 56248231 7.0E-06 TGGAGGCAAGTGGGGG 16 V_SP1_03_M02281 TRANSFAC + 56247165 56247174 3.0E-06 CCCCTCCCCC 10 V_NKX24_01_M01350 TRANSFAC + 56246327 56246342 9.0E-06 TGAAACTCTTAAAAAT 16 V_PPAR_DR1_Q2_M00763 TRANSFAC + 56247299 56247311 7.0E-06 TGCCCTTTAACCC 13 V_SP1_02_M01303 TRANSFAC + 56247339 56247349 5.0E-06 GGGGTGGGGAG 11 V_NFY_Q6_01_M00775 TRANSFAC + 56247984 56247996 8.0E-06 CCTGAGCCAATCG 13 V_RPC155_01_M01798 TRANSFAC - 56246457 56246472 5.0E-06 TTGGAAGTTCGAGCCC 16 V_HNF6_Q6_M00639 TRANSFAC + 56246337 56246348 0.0E+00 AAAAATCAATGA 12 V_SOX7_03_M02807 TRANSFAC + 56246334 56246355 4.0E-06 CTTAAAAATCAATGAAGAAAAA 22 V_SP4_03_M02810 TRANSFAC + 56247157 56247173 5.0E-06 CACACCGCCCCCTCCCC 17 V_KROX_Q6_M00982 TRANSFAC + 56247160 56247173 1.0E-05 ACCGCCCCCTCCCC 14 V_KROX_Q6_M00982 TRANSFAC + 56248128 56248141 3.0E-06 GCCGCCCCCGCGCC 14 V_EGR1_Q6_M01873 TRANSFAC - 56248129 56248138 4.0E-06 GCGGGGGCGG 10 V_PAX5_01_M00143 TRANSFAC + 56246335 56246362 3.0E-06 TTAAAAATCAATGAAGAAAAACCTGCAG 28 V_ASCL2_03_M02737 TRANSFAC + 56246576 56246592 7.0E-06 CTCCGCAGCTGCCAAAA 17 V_YY1_Q6_02_M01035 TRANSFAC + 56247922 56247932 4.0E-06 TCCGCCATATT 11 V_HBP1_03_M02762 TRANSFAC + 56246338 56246353 5.0E-06 AAAATCAATGAAGAAA 16 V_SP1SP3_Q4_M01219 TRANSFAC + 56247161 56247171 1.0E-06 CCGCCCCCTCC 11 V_NFKAPPAB50_01_M00051 TRANSFAC + 56247344 56247353 8.0E-06 GGGGAGTCCC 10 V_ATF3_Q6_M00513 TRANSFAC - 56246429 56246442 6.0E-06 TTCTTACGTCTTCG 14 V_PTF1BETA_Q6_M00657 TRANSFAC + 56246350 56246363 7.0E-06 GAAAAACCTGCAGG 14 V_YY1_03_M02044 TRANSFAC + 56247922 56247933 2.0E-06 TCCGCCATATTG 12 V_MTF1_06_M02882 TRANSFAC + 56248425 56248438 8.0E-06 ATCTATGAAATAGA 14 V_TAL1_01_M01591 TRANSFAC - 56246487 56246499 1.0E-06 TTTTCTTCTCTCT 13 V_TAL1_01_M01591 TRANSFAC - 56246761 56246773 3.0E-06 TTTGCTTCTCTGC 13 V_PLAG1_01_M01778 TRANSFAC - 56246640 56246655 5.0E-06 GAGGCAGCCAAGAGGG 16 V_HDX_01_M01333 TRANSFAC + 56246333 56246349 3.0E-06 TCTTAAAAATCAATGAA 17 V_NFY_01_M00287 TRANSFAC + 56247985 56248000 8.0E-06 CTGAGCCAATCGCAGC 16 V_STAT1STAT1_Q3_M01212 TRANSFAC + 56246753 56246765 5.0E-06 GTTTCCAAGCAGA 13 V_ZFP281_01_M01597 TRANSFAC - 56247165 56247175 2.0E-06 GGGGGGAGGGG 11 V_BBX_03_M02739 TRANSFAC + 56246338 56246352 0.0E+00 AAAATCAATGAAGAA 15 V_BBX_03_M02739 TRANSFAC - 56246338 56246352 5.0E-06 TTCTTCATTGATTTT 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 56247220 56247237 1.0E-06 TGGAGGAAGGAAGGCTGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 56247224 56247241 6.0E-06 GGGCTGGAGGAAGGAAGG 18 V_RXRLXRB_01_M01198 TRANSFAC - 56247299 56247311 4.0E-06 GGGTTAAAGGGCA 13 V_MAFK_04_M02880 TRANSFAC + 56246586 56246600 1.0E-06 GCCAAAAGTGCAAGA 15 V_TAACC_B_M00331 TRANSFAC + 56246760 56246782 6.0E-06 AGCAGAGAAGCAAAACCCAGAGC 23 V_PBX1_04_M01357 TRANSFAC + 56246335 56246351 5.0E-06 TTAAAAATCAATGAAGA 17 V_TR4_03_M01782 TRANSFAC - 56247299 56247311 4.0E-06 GGGTTAAAGGGCA 13 V_NANOG_02_M01247 TRANSFAC + 56246334 56246353 5.0E-06 CTTAAAAATCAATGAAGAAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.