Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RBM46 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 166863 RNA binding motif protein 46 chr4 + 155697426 - 155702926 155702426 Transcription Factor Binding Sites   Download all TFBS in the RBM46 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ZNF713_C2H2_full_monomeric_17_1 SELEX + 155700616 155700632 8.0E-06 GAGAAAAAAGACAAAAA 17 STAT1_MA0137.2 JASPAR + 155700674 155700688 5.0E-06 TATTTCCAAGAACAA 15 STAT1_MA0137.2 JASPAR + 155700740 155700754 1.0E-06 CCATTCCTAGAAATT 15 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 155700739 155700755 4.0E-06 TAATTTCTAGGAATGGC 17 V_STAT5A_Q6_M01890 TRANSFAC + 155700673 155700685 2.0E-06 CTATTTCCAAGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 155700743 155700755 0.0E+00 TAATTTCTAGGAA 13 V_BCL6_Q3_01_M02085 TRANSFAC + 155700742 155700751 6.0E-06 ATTCCTAGAA 10 V_BCL6_Q3_01_M02085 TRANSFAC - 155700744 155700753 5.0E-06 ATTTCTAGGA 10 V_BCL6B_03_M02740 TRANSFAC - 155700739 155700754 0.0E+00 AATTTCTAGGAATGGC 16 V_STAT_Q6_M00777 TRANSFAC - 155700678 155700690 4.0E-06 GATTGTTCTTGGA 13 V_STAT_Q6_M00777 TRANSFAC - 155700744 155700756 7.0E-06 GTAATTTCTAGGA 13 V_FOXJ1_04_M02854 TRANSFAC + 155700696 155700710 9.0E-06 ACCTCACAACATCTC 15 V_IRF_Q6_01_M00972 TRANSFAC + 155700629 155700639 8.0E-06 AAAAGGGAAAC 11 V_IRF3_05_M02767 TRANSFAC + 155700628 155700641 1.0E-05 AAAAAGGGAAACAA 14 V_STAT5B_01_M00459 TRANSFAC + 155700674 155700688 7.0E-06 TATTTCCAAGAACAA 15 V_STAT5B_01_M00459 TRANSFAC - 155700674 155700688 3.0E-06 TTGTTCTTGGAAATA 15 V_STAT5B_01_M00459 TRANSFAC + 155700740 155700754 5.0E-06 CCATTCCTAGAAATT 15 V_STAT5B_01_M00459 TRANSFAC - 155700740 155700754 1.0E-05 AATTTCTAGGAATGG 15 V_STAT6_01_M00494 TRANSFAC + 155700674 155700681 7.0E-06 TATTTCCA 8 V_PU1_Q4_M01172 TRANSFAC - 155700628 155700646 4.0E-06 TTTTCTTGTTTCCCTTTTT 19 V_BCL6_02_M01185 TRANSFAC - 155700742 155700755 3.0E-06 TAATTTCTAGGAAT 14 V_IRX4_01_M01410 TRANSFAC + 155700750 155700766 4.0E-06 AAATTACTTGTTTTAAA 17 V_IRF3_Q3_M01279 TRANSFAC - 155700630 155700642 2.0E-06 CTTGTTTCCCTTT 13 V_IRF_Q6_M00772 TRANSFAC - 155700629 155700643 5.0E-06 TCTTGTTTCCCTTTT 15 V_BCL6_Q3_M01171 TRANSFAC - 155700744 155700753 5.0E-06 ATTTCTAGGA 10 V_IRX3_01_M01318 TRANSFAC + 155700750 155700766 8.0E-06 AAATTACTTGTTTTAAA 17 V_IRX5_01_M01472 TRANSFAC + 155700750 155700766 4.0E-06 AAATTACTTGTTTTAAA 17 V_GATA4_Q3_M00632 TRANSFAC + 155700617 155700628 3.0E-06 AGAAAAAAGACA 12 V_IRX3_02_M01485 TRANSFAC + 155700750 155700766 8.0E-06 AAATTACTTGTTTTAAA 17 V_FOXL1_02_M02857 TRANSFAC - 155700753 155700768 3.0E-06 AATTTAAAACAAGTAA 16 V_PARP_Q3_M01211 TRANSFAC - 155700673 155700682 2.0E-06 TTGGAAATAG 10 V_STAT1STAT1_Q3_M01212 TRANSFAC + 155700675 155700687 1.0E-06 ATTTCCAAGAACA 13 V_STAT5A_01_M00457 TRANSFAC + 155700674 155700688 9.0E-06 TATTTCCAAGAACAA 15 V_STAT5A_01_M00457 TRANSFAC - 155700674 155700688 4.0E-06 TTGTTCTTGGAAATA 15 V_STAT5A_01_M00457 TRANSFAC + 155700740 155700754 7.0E-06 CCATTCCTAGAAATT 15 V_PR_02_M00957 TRANSFAC - 155700676 155700702 6.0E-06 GTGAGGTACAAAGATTGTTCTTGGAAA 27 V_STAT1_05_M01260 TRANSFAC - 155700667 155700688 2.0E-06 TTGTTCTTGGAAATAGCCTGGA 22 V_STAT1_05_M01260 TRANSFAC - 155700733 155700754 4.0E-06 AATTTCTAGGAATGGCTGTAAG 22 V_STAT1_05_M01260 TRANSFAC + 155700740 155700761 6.0E-06 CCATTCCTAGAAATTACTTGTT 22 V_NANOG_02_M01247 TRANSFAC + 155700618 155700637 4.0E-06 GAAAAAAGACAAAAAGGGAA 20 V_HSF1_Q6_01_M02017 TRANSFAC - 155700743 155700756 2.0E-06 GTAATTTCTAGGAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.