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DCX Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1641 doublecortin chrX - 110653874 - 110660460 110654374 Transcription Factor Binding Sites   Download all TFBS in the DCX promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 110654186 110654197 8.0E-06 AACACTCCCCCT 12 NFIA_NFI_full_dimeric_15_1 SELEX + 110653918 110653932 1.0E-06 TTGGCACTGTTCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 110653918 110653932 6.0E-06 CTGGAACAGTGCCAA 15 IRF7_IRF_DBD_dimeric_14_1 SELEX - 110654195 110654208 5.0E-06 AATAAAATGAAAAC 14 ESR2_MA0258.1 JASPAR + 110655002 110655019 0.0E+00 CAATGTCACCATGACCTA 18 ESR2_MA0258.1 JASPAR - 110655003 110655020 0.0E+00 ATAGGTCATGGTGACATT 18 ZNF435_C2H2_full_dimeric_18_1 SELEX + 110655424 110655441 7.0E-06 TTTGTTGTCTGAGCTCCA 18 PDX1_homeodomain_DBD_monomeric_8_1 SELEX - 110655548 110655555 5.0E-06 GTAATTAA 8 NFIX_NFI_full_dimeric_15_2 SELEX + 110653918 110653932 3.0E-06 TTGGCACTGTTCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 110653918 110653932 1.0E-06 CTGGAACAGTGCCAA 15 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 110655013 110655030 5.0E-06 TGAGCTCAGCATAGGTCA 18 LEF1_HMG_DBD_monomeric_15_1 SELEX - 110655419 110655433 1.0E-05 AGACAACAAAGGCAT 15 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX - 110655548 110655555 5.0E-06 GTAATTAA 8 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 110655344 110655354 5.0E-06 ATCACTTAAAA 11 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 110655013 110655029 7.0E-06 GAGCTCAGCATAGGTCA 17 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 110655547 110655556 7.0E-06 TGTAATTAAT 10 ESR1_MA0112.2 JASPAR + 110654999 110655018 0.0E+00 TTCCAATGTCACCATGACCT 20 ESR1_MA0112.2 JASPAR - 110655004 110655023 4.0E-06 AGCATAGGTCATGGTGACAT 20 SP1_MA0079.2 JASPAR + 110654241 110654250 3.0E-06 CCCCTCCCCC 10 NFIX_NFI_full_monomeric_9_2 SELEX - 110655701 110655709 8.0E-06 ATTGCCAAT 9 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX - 110655547 110655556 3.0E-06 TGTAATTAAT 10 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 110654015 110654027 1.0E-05 CTAAATACATTAA 13 VAX1_homeodomain_DBD_monomeric_8_1 SELEX + 110655548 110655555 9.0E-06 TTAATTAC 8 Lhx3_MA0135.1 JASPAR - 110655542 110655554 5.0E-06 TAATTAATCATAG 13 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 110655003 110655019 0.0E+00 AATGTCACCATGACCTA 17 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 110655003 110655019 0.0E+00 TAGGTCATGGTGACATT 17 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 110655013 110655029 5.0E-06 GAGCTCAGCATAGGTCA 17 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 110655698 110655712 6.0E-06 AAAATTGGCAATTTC 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 110655699 110655711 2.0E-06 AAATTGCCAATTT 13 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX - 110655547 110655556 8.0E-06 TGTAATTAAT 10 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 110655547 110655556 9.0E-06 TGTAATTAAT 10 NFIB_NFI_full_dimeric_15_1 SELEX + 110653918 110653932 1.0E-06 TTGGCACTGTTCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 110653918 110653932 5.0E-06 CTGGAACAGTGCCAA 15 POU6F2_POU_full_monomeric_10_1 SELEX - 110655665 110655674 7.0E-06 GCTCATTAGA 10 Pou5f1_MA0142.1 JASPAR - 110654159 110654173 8.0E-06 TACTGAAATGCAAAG 15 VAX2_homeodomain_DBD_monomeric_8_1 SELEX + 110655548 110655555 5.0E-06 TTAATTAC 8 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 110654040 110654050 2.0E-06 TTTCCTCACAC 11 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 110655344 110655354 3.0E-06 ATCACTTAAAA 11 TP53_MA0106.1 JASPAR - 110655096 110655115 7.0E-06 ACTGGCATGCCTGGGGAAAT 20 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 110654040 110654051 9.0E-06 TTTCCTCACACA 12 MNX1_homeodomain_DBD_monomeric_10_1 SELEX - 110655547 110655556 7.0E-06 TGTAATTAAT 10 NFIA_NFI_full_monomeric_10_1 SELEX - 110653916 110653925 9.0E-06 AGTGCCAAGA 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 110655344 110655354 5.0E-06 ATCACTTAAAA 11 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 110655548 110655555 9.0E-06 TTAATTAC 8 V_STAT5A_Q6_M01890 TRANSFAC - 110655773 110655785 0.0E+00 CAATTTCTAAGAA 13 V_MSX3_01_M01341 TRANSFAC - 110655545 110655560 8.0E-06 AGCATGTAATTAATCA 16 V_DBX1_01_M01483 TRANSFAC - 110655542 110655558 1.0E-05 CATGTAATTAATCATAG 17 V_BCL6_Q3_01_M02085 TRANSFAC - 110655335 110655344 9.0E-06 TTTTCAAGAA 10 V_NF1_Q6_01_M00806 TRANSFAC - 110653916 110653932 1.0E-06 CTGGAACAGTGCCAAGA 17 V_ESR1_01_M02261 TRANSFAC + 110654999 110655018 0.0E+00 TTCCAATGTCACCATGACCT 20 V_ESR1_01_M02261 TRANSFAC - 110655004 110655023 4.0E-06 AGCATAGGTCATGGTGACAT 20 V_CEBP_Q3_M00770 TRANSFAC + 110655698 110655709 5.0E-06 AAAATTGGCAAT 12 V_POU5F1_02_M02245 TRANSFAC - 110654159 110654173 8.0E-06 TACTGAAATGCAAAG 15 V_OTX_Q1_M01117 TRANSFAC + 110655546 110655553 5.0E-06 GATTAATT 8 V_POU1F1_Q6_M00744 TRANSFAC + 110655544 110655553 5.0E-06 ATGATTAATT 10 V_IRF3_05_M02767 TRANSFAC + 110655397 110655410 9.0E-06 GAGAAAGAAAACCA 14 V_STAT5B_01_M00459 TRANSFAC + 110655770 110655784 1.0E-05 GGCTTCTTAGAAATT 15 V_STAT5B_01_M00459 TRANSFAC - 110655770 110655784 9.0E-06 AATTTCTAAGAAGCC 15 V_FOXJ1_03_M02750 TRANSFAC + 110654252 110654267 9.0E-06 AGAATAAACTAAGATT 16 V_SP1_03_M02281 TRANSFAC + 110654241 110654250 3.0E-06 CCCCTCCCCC 10 V_NKX61_03_M01489 TRANSFAC + 110655543 110655559 2.0E-06 TATGATTAATTACATGC 17 V_AFP1_Q6_M00616 TRANSFAC + 110655547 110655557 0.0E+00 ATTAATTACAT 11 V_LHX3A_01_M00510 TRANSFAC - 110655548 110655557 4.0E-06 ATGTAATTAA 10 V_PAX6_02_M01391 TRANSFAC + 110655545 110655560 6.0E-06 TGATTAATTACATGCT 16 V_CEBPB_01_M00109 TRANSFAC + 110653948 110653961 0.0E+00 AGATTTTGAAATAG 14 V_COMP1_01_M00057 TRANSFAC + 110655576 110655599 4.0E-06 AGGCTGCATTAACAGCTAGAAAGG 24 V_LMX1_01_M01409 TRANSFAC - 110655543 110655559 9.0E-06 GCATGTAATTAATCATA 17 V_GFI1_01_M00250 TRANSFAC + 110655402 110655425 9.0E-06 AGAAAACCAATCTCTCTATGCCTT 24 V_NFAT_Q6_M00302 TRANSFAC - 110654995 110655006 1.0E-06 CATTGGAAAAAA 12 V_NKX61_01_M00424 TRANSFAC - 110654018 110654030 6.0E-06 GTTTTAATGTATT 13 V_HOXB6_01_M01460 TRANSFAC + 110655543 110655558 0.0E+00 TATGATTAATTACATG 16 V_PBX1_01_M00096 TRANSFAC - 110655544 110655552 1.0E-05 ATTAATCAT 9 V_ERALPHA_01_M01801 TRANSFAC + 110655004 110655018 1.0E-06 ATGTCACCATGACCT 15 V_ERALPHA_01_M01801 TRANSFAC - 110655004 110655018 1.0E-06 AGGTCATGGTGACAT 15 V_CDC5_01_M00478 TRANSFAC - 110654019 110654030 4.0E-06 GTTTTAATGTAT 12 V_HB24_01_M01399 TRANSFAC + 110655542 110655556 0.0E+00 CTATGATTAATTACA 15 V_HB24_01_M01399 TRANSFAC - 110655543 110655557 7.0E-06 ATGTAATTAATCATA 15 V_STAT4_Q5_M02117 TRANSFAC + 110655773 110655782 9.0E-06 TTCTTAGAAA 10 V_ARID3A_04_M02735 TRANSFAC - 110655543 110655559 1.0E-05 GCATGTAATTAATCATA 17 V_LHX3b_01_M01971 TRANSFAC - 110655548 110655557 1.0E-05 ATGTAATTAA 10 V_NKX63_01_M01470 TRANSFAC + 110655543 110655559 5.0E-06 TATGATTAATTACATGC 17 V_TFIII_Q6_M00706 TRANSFAC + 110653904 110653912 6.0E-06 AGAGGGAGG 9 V_GR_Q6_02_M01836 TRANSFAC - 110654108 110654120 7.0E-06 CCTTCTGTTCTCT 13 V_HOXA7_02_M01336 TRANSFAC - 110655543 110655559 3.0E-06 GCATGTAATTAATCATA 17 V_POU5F1_01_M01307 TRANSFAC - 110654158 110654167 6.0E-06 AATGCAAAGA 10 V_HOXB8_01_M01451 TRANSFAC - 110655544 110655559 3.0E-06 GCATGTAATTAATCAT 16 V_HDX_01_M01333 TRANSFAC + 110655336 110655352 1.0E-05 TCTTGAAAATCACTTAA 17 V_NKX61_02_M01469 TRANSFAC + 110655543 110655558 2.0E-06 TATGATTAATTACATG 16 V_AIRE_01_M00999 TRANSFAC + 110653995 110654020 4.0E-06 TATCAAATTGGAACTTCGGGCTAAAT 26 V_AIRE_01_M00999 TRANSFAC - 110654995 110655020 1.0E-06 ATAGGTCATGGTGACATTGGAAAAAA 26 V_SMAD3_03_M02794 TRANSFAC + 110653924 110653940 1.0E-05 CTGTTCCAGACAGAGGA 17 V_MSX1_02_M01412 TRANSFAC - 110655545 110655560 4.0E-06 AGCATGTAATTAATCA 16 V_STAT1STAT1_Q3_M01212 TRANSFAC - 110655771 110655783 1.0E-05 ATTTCTAAGAAGC 13 V_ZFP281_01_M01597 TRANSFAC - 110654241 110654251 2.0E-06 GGGGGGAGGGG 11 V_OCT1_06_M00162 TRANSFAC + 110655547 110655560 1.0E-06 ATTAATTACATGCT 14 V_HOXC5_01_M01454 TRANSFAC - 110655543 110655559 5.0E-06 GCATGTAATTAATCATA 17 V_LEF1TCF1_Q4_M00978 TRANSFAC + 110655422 110655432 2.0E-06 CCTTTGTTGTC 11 V_IRF1_Q6_01_M01881 TRANSFAC + 110654194 110654207 6.0E-06 TGTTTTCATTTTAT 14 V_DMRT2_01_M01147 TRANSFAC - 110655780 110655795 6.0E-06 AAGAGAGCTACAATTT 16 V_STAT5A_01_M00457 TRANSFAC + 110655770 110655784 7.0E-06 GGCTTCTTAGAAATT 15 V_STAT5A_01_M00457 TRANSFAC - 110655770 110655784 5.0E-06 AATTTCTAAGAAGCC 15 V_SOX18_04_M02905 TRANSFAC + 110654012 110654027 6.0E-06 GGGCTAAATACATTAA 16 V_SOX4_01_M01308 TRANSFAC - 110655422 110655429 1.0E-05 AACAAAGG 8 V_HOXD3_01_M01338 TRANSFAC + 110655543 110655558 9.0E-06 TATGATTAATTACATG 16 V_LHX5_01_M01353 TRANSFAC + 110655544 110655560 4.0E-06 ATGATTAATTACATGCT 17 V_CEBP_Q2_01_M00912 TRANSFAC - 110653948 110653959 5.0E-06 ATTTCAAAATCT 12 V_HOXD10_01_M01375 TRANSFAC + 110654018 110654034 5.0E-06 AATACATTAAAACTGGC 17 V_PAX2_02_M00486 TRANSFAC + 110654254 110654262 8.0E-06 AATAAACTA 9 V_ESR2_01_M02377 TRANSFAC + 110655002 110655019 0.0E+00 CAATGTCACCATGACCTA 18 V_ESR2_01_M02377 TRANSFAC - 110655003 110655020 0.0E+00 ATAGGTCATGGTGACATT 18 V_NF1_Q6_M00193 TRANSFAC + 110653916 110653933 4.0E-06 TCTTGGCACTGTTCCAGA 18 V_HOXC9_01_M01416 TRANSFAC - 110655544 110655559 2.0E-06 GCATGTAATTAATCAT 16 V_OCT4_01_M01125 TRANSFAC - 110654159 110654173 1.0E-05 TACTGAAATGCAAAG 15 V_HOXC8_01_M01321 TRANSFAC + 110655543 110655558 7.0E-06 TATGATTAATTACATG 16 V_ER_Q6_M00191 TRANSFAC + 110655002 110655020 3.0E-06 CAATGTCACCATGACCTAT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.