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Construction and Validation

Optimal Promoter Size

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SLC5A12 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 159963 chr11 + 26738574 - 26748574 0 Transcription Factor Binding Sites   Download all TFBS in the SLC5A12 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX1_TBX_DBD_dimeric_20_2 SELEX + 26739058 26739077 1.0E-06 TTATCACTTGAGGGTGAGAA 20 TBX1_TBX_DBD_dimeric_20_2 SELEX - 26739058 26739077 7.0E-06 TTCTCACCCTCAAGTGATAA 20 MYBL1_MYB_DBD_dimeric_17_1 SELEX + 26739165 26739181 2.0E-06 GGCATTTAAATCAGTTG 17 V_GKLF_02_M01588 TRANSFAC - 26741756 26741767 3.0E-06 ACCACACCCAGC 12 V_TTF1_Q6_M00794 TRANSFAC - 26739060 26739071 2.0E-06 CCCTCAAGTGAT 12 V_IK3_01_M00088 TRANSFAC - 26739077 26739089 4.0E-06 TATAGGGAATTCT 13 V_ZBTB3_03_M02825 TRANSFAC + 26739147 26739163 3.0E-06 AATCCCACTGCATATCA 17 V_LUN1_01_M00480 TRANSFAC + 26741783 26741799 3.0E-06 TCCCAGCTACTTGGGAG 17 V_EKLF_Q5_M01874 TRANSFAC - 26741757 26741766 5.0E-06 CCACACCCAG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.