Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FAM154A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 158297 family with sequence similarity 154, member A chr9 - 19032756 - 19038256 19033256 Transcription Factor Binding Sites   Download all TFBS in the FAM154A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 19031081 19031091 8.0E-06 AATGAGTCATA 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 19031081 19031091 4.0E-06 TATGACTCATT 11 CTCF_MA0139.1 JASPAR - 19029032 19029050 0.0E+00 TGGCCACAAGATGGCAGAC 19 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 19028939 19028950 4.0E-06 TTTAAAAATAAA 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 19028797 19028808 9.0E-06 AGATTCCAATCA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 19028939 19028950 2.0E-06 TTTAAAAATAAA 12 Pax4_MA0068.1 JASPAR + 19028941 19028970 9.0E-06 TAAAAATAAAATAAAATCCAGAACTCCAAA 30 IRF1_MA0050.1 JASPAR - 19028971 19028982 3.0E-06 AAAAGCAAAACC 12 NFATC1_NFAT_full_dimeric_14_1 SELEX + 19031016 19031029 1.0E-06 CTTCCAATGGAAAG 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 19031016 19031029 1.0E-06 CTTTCCATTGGAAG 14 MEF2A_MA0052.1 JASPAR - 19028940 19028949 7.0E-06 TTATTTTTAA 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 19029109 19029118 6.0E-06 AGCAGCTGCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX + 19036790 19036806 4.0E-06 GGCACCACCTAGTGGAG 17 JDP2_bZIP_full_dimeric_9_1 SELEX + 19031082 19031090 4.0E-06 ATGAGTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 19031082 19031090 2.0E-06 ATGACTCAT 9 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 19028787 19028797 3.0E-06 ACTTGTAAAAC 11 V_FOXP1_01_M00987 TRANSFAC + 19028744 19028763 2.0E-06 ATATGTCTGATTTTTTTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 19028935 19028947 1.0E-06 TCTATTTAAAAAT 13 V_DBX1_01_M01483 TRANSFAC + 19028932 19028948 3.0E-06 AAATCTATTTAAAAATA 17 V_DBX1_01_M01483 TRANSFAC + 19028933 19028949 2.0E-06 AATCTATTTAAAAATAA 17 V_DBX1_01_M01483 TRANSFAC + 19028937 19028953 5.0E-06 TATTTAAAAATAAAATA 17 V_DBX1_01_M01483 TRANSFAC - 19028937 19028953 0.0E+00 TATTTTATTTTTAAATA 17 V_DBX1_01_M01483 TRANSFAC + 19028940 19028956 8.0E-06 TTAAAAATAAAATAAAA 17 V_YY1_02_M00069 TRANSFAC + 19029031 19029050 6.0E-06 CGTCTGCCATCTTGTGGCCA 20 V_ACAAT_B_M00309 TRANSFAC + 19029081 19029089 8.0E-06 CATTGGTGG 9 V_HMGIY_Q3_M01010 TRANSFAC - 19028943 19028957 5.0E-06 ATTTTATTTTATTTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 19028948 19028962 5.0E-06 TCTGGATTTTATTTT 15 V_EVI1_04_M00081 TRANSFAC + 19028944 19028958 1.0E-06 AAATAAAATAAAATC 15 V_BCL6_01_M01183 TRANSFAC - 19028784 19028799 3.0E-06 TCACTTGTAAAACTTT 16 V_HOXA13_02_M01297 TRANSFAC + 19028944 19028952 4.0E-06 AAATAAAAT 9 V_HOXA13_02_M01297 TRANSFAC + 19028949 19028957 4.0E-06 AAATAAAAT 9 V_SATB1_Q3_M01723 TRANSFAC + 19028920 19028935 2.0E-06 AAAACTAAAGATAAAT 16 V_MEF2_02_M00231 TRANSFAC - 19028931 19028952 3.0E-06 ATTTTATTTTTAAATAGATTTA 22 V_MEF2_02_M00231 TRANSFAC + 19028933 19028954 3.0E-06 AATCTATTTAAAAATAAAATAA 22 V_GLI1_Q2_M01042 TRANSFAC + 19031072 19031081 7.0E-06 GAACACCCAA 10 V_FOXO3A_Q1_M01137 TRANSFAC + 19028941 19028952 1.0E-06 TAAAAATAAAAT 12 V_YY1_Q6_M00793 TRANSFAC + 19029036 19029044 7.0E-06 GCCATCTTG 9 V_AP4_Q6_02_M01860 TRANSFAC + 19029100 19029112 4.0E-06 GCAGCTGTGGGCA 13 V_SOX21_03_M02803 TRANSFAC + 19028939 19028954 9.0E-06 TTTAAAAATAAAATAA 16 V_HOXA13_03_M01430 TRANSFAC - 19028785 19028800 7.0E-06 ATCACTTGTAAAACTT 16 V_MEF2A_Q6_M02024 TRANSFAC + 19028937 19028946 4.0E-06 TATTTAAAAA 10 V_MEF2A_Q6_M02024 TRANSFAC - 19028939 19028948 1.0E-06 TATTTTTAAA 10 V_AR_03_M00956 TRANSFAC - 19030997 19031023 2.0E-06 ATTGGAAGCAGAGTCTGTTCTTGTGTC 27 V_AP1_Q6_M00174 TRANSFAC - 19031081 19031091 7.0E-06 TATGACTCATT 11 V_ELF4_04_M02850 TRANSFAC + 19028937 19028953 7.0E-06 TATTTAAAAATAAAATA 17 V_ELF4_04_M02850 TRANSFAC + 19028938 19028954 0.0E+00 ATTTAAAAATAAAATAA 17 V_ELF4_04_M02850 TRANSFAC + 19028939 19028955 3.0E-06 TTTAAAAATAAAATAAA 17 V_BACH1_01_M00495 TRANSFAC + 19031079 19031093 2.0E-06 CAAATGAGTCATAAC 15 V_POU3F2_01_M00463 TRANSFAC - 19028930 19028943 6.0E-06 TTAAATAGATTTAT 14 V_PR_01_M00954 TRANSFAC - 19030997 19031023 8.0E-06 ATTGGAAGCAGAGTCTGTTCTTGTGTC 27 V_ZFP105_03_M02827 TRANSFAC + 19028941 19028955 1.0E-06 TAAAAATAAAATAAA 15 V_GFI1_01_M00250 TRANSFAC - 19028740 19028763 7.0E-06 AAAAAAAAAATCAGACATATTTTA 24 V_IRF2_01_M00063 TRANSFAC - 19028971 19028983 2.0E-06 GAAAAGCAAAACC 13 V_RSRFC4_Q2_M00407 TRANSFAC + 19028921 19028937 6.0E-06 AAACTAAAGATAAATCT 17 V_RSRFC4_Q2_M00407 TRANSFAC - 19028932 19028948 7.0E-06 TATTTTTAAATAGATTT 17 V_RSRFC4_Q2_M00407 TRANSFAC + 19028937 19028953 1.0E-06 TATTTAAAAATAAAATA 17 V_AP1_Q6_01_M00925 TRANSFAC - 19031082 19031090 4.0E-06 ATGACTCAT 9 V_HNF1_Q6_01_M01011 TRANSFAC + 19028935 19028955 1.0E-06 TCTATTTAAAAATAAAATAAA 21 V_MEF2_03_M00232 TRANSFAC + 19028917 19028938 4.0E-06 TAGAAAACTAAAGATAAATCTA 22 V_MEF2_03_M00232 TRANSFAC - 19028931 19028952 1.0E-06 ATTTTATTTTTAAATAGATTTA 22 V_MEF2_03_M00232 TRANSFAC + 19028933 19028954 1.0E-06 AATCTATTTAAAAATAAAATAA 22 V_ASCL2_03_M02737 TRANSFAC + 19029106 19029122 4.0E-06 GTGGGCAGCTGCTCCTG 17 V_JUNDM2_04_M02876 TRANSFAC + 19031078 19031093 7.0E-06 CCAAATGAGTCATAAC 16 V_JUNDM2_04_M02876 TRANSFAC - 19031079 19031094 6.0E-06 GGTTATGACTCATTTG 16 V_OCT1_04_M00138 TRANSFAC + 19028799 19028821 6.0E-06 ATTGGAATCTTTAAATTTAGACA 23 V_OCT1_04_M00138 TRANSFAC + 19028930 19028952 1.0E-06 ATAAATCTATTTAAAAATAAAAT 23 V_GR_01_M00955 TRANSFAC - 19030997 19031023 5.0E-06 ATTGGAAGCAGAGTCTGTTCTTGTGTC 27 V_AP1_C_M00199 TRANSFAC + 19031082 19031090 8.0E-06 ATGAGTCAT 9 V_MEF2_Q6_01_M00941 TRANSFAC - 19028940 19028951 3.0E-06 TTTTATTTTTAA 12 V_AP1_01_M00517 TRANSFAC + 19031080 19031092 3.0E-06 AAATGAGTCATAA 13 V_SP3_Q3_M00665 TRANSFAC + 19031092 19031105 8.0E-06 ACCCTACTGCAGGG 14 V_TBP_06_M02814 TRANSFAC + 19028933 19028948 7.0E-06 AATCTATTTAAAAATA 16 V_TBP_06_M02814 TRANSFAC + 19028935 19028950 2.0E-06 TCTATTTAAAAATAAA 16 V_TBP_06_M02814 TRANSFAC - 19028935 19028950 2.0E-06 TTTATTTTTAAATAGA 16 V_TBP_06_M02814 TRANSFAC - 19028937 19028952 2.0E-06 ATTTTATTTTTAAATA 16 V_TBP_06_M02814 TRANSFAC - 19028941 19028956 4.0E-06 TTTTATTTTATTTTTA 16 V_CTCF_02_M01259 TRANSFAC - 19029034 19029053 0.0E+00 ATTTGGCCACAAGATGGCAG 20 V_CTCF_02_M01259 TRANSFAC - 19036791 19036810 6.0E-06 ACAGCTCCACTAGGTGGTGC 20 V_CTCF_01_M01200 TRANSFAC - 19029032 19029051 0.0E+00 TTGGCCACAAGATGGCAGAC 20 V_LIM1_01_M01418 TRANSFAC + 19028932 19028948 9.0E-06 AAATCTATTTAAAAATA 17 V_ZFP691_04_M02937 TRANSFAC + 19031026 19031042 1.0E-06 AAAGTGACTCCTTTGCA 17 V_ZFP105_04_M02931 TRANSFAC - 19028931 19028947 9.0E-06 ATTTTTAAATAGATTTA 17 V_AP1_Q4_01_M00926 TRANSFAC + 19031083 19031090 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC + 19028938 19028951 5.0E-06 ATTTAAAAATAAAA 14 V_MTF1_06_M02882 TRANSFAC + 19028942 19028955 3.0E-06 AAAAATAAAATAAA 14 V_FOXL1_02_M02857 TRANSFAC + 19028938 19028953 2.0E-06 ATTTAAAAATAAAATA 16 V_FOXL1_02_M02857 TRANSFAC + 19028943 19028958 0.0E+00 AAAATAAAATAAAATC 16 V_ZBTB4_04_M02929 TRANSFAC - 19028787 19028802 3.0E-06 CAATCACTTGTAAAAC 16 V_GATA6_01_M00462 TRANSFAC + 19028926 19028935 6.0E-06 AAAGATAAAT 10 V_SMAD3_03_M02794 TRANSFAC - 19028742 19028758 7.0E-06 AAAAATCAGACATATTT 17 V_LMX1B_01_M01363 TRANSFAC - 19028932 19028948 6.0E-06 TATTTTTAAATAGATTT 17 V_FRA1_Q5_M01267 TRANSFAC + 19031083 19031090 1.0E-05 TGAGTCAT 8 V_RSRFC4_01_M00026 TRANSFAC - 19028937 19028952 1.0E-06 ATTTTATTTTTAAATA 16 V_PLZF_02_M01075 TRANSFAC + 19028913 19028941 9.0E-06 ATTTTAGAAAACTAAAGATAAATCTATTT 29 V_SRF_06_M02916 TRANSFAC + 19028938 19028954 0.0E+00 ATTTAAAAATAAAATAA 17 V_SRF_06_M02916 TRANSFAC + 19028939 19028955 8.0E-06 TTTAAAAATAAAATAAA 17 V_PR_02_M00957 TRANSFAC - 19030997 19031023 2.0E-06 ATTGGAAGCAGAGTCTGTTCTTGTGTC 27 V_IRF1_01_M00062 TRANSFAC - 19028971 19028983 0.0E+00 GAAAAGCAAAACC 13 V_GLI_Q2_M01037 TRANSFAC - 19031071 19031082 3.0E-06 TTTGGGTGTTCC 12 V_HOXA10_01_M01464 TRANSFAC + 19028940 19028955 7.0E-06 TTAAAAATAAAATAAA 16 V_HOXA10_01_M01464 TRANSFAC + 19028945 19028960 6.0E-06 AATAAAATAAAATCCA 16 V_HOXD10_01_M01375 TRANSFAC + 19028933 19028949 4.0E-06 AATCTATTTAAAAATAA 17 V_GLIS2_04_M02863 TRANSFAC - 19028937 19028950 1.0E-06 TTTATTTTTAAATA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.