Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

AGR3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 155465 anterior gradient 3 homolog (Xenopus laevis) chr7 - 16921113 - 16926613 16921613 Transcription Factor Binding Sites   Download all TFBS in the AGR3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 16918168 16918176 4.0E-06 GCAATAAAA 9 HSF2_HSF_DBD_trimeric_13_1 SELEX + 16921600 16921612 7.0E-06 TTCTGGATGTTTC 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 16917929 16917941 1.0E-06 GCAAACAATAACA 13 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 16918167 16918176 1.0E-06 GCAATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 16918167 16918176 0.0E+00 GCAATAAAAA 10 POU2F1_POU_DBD_dimeric_14_1 SELEX - 16917917 16917930 6.0E-06 CATAAATTTGCATT 14 SRY_HMG_DBD_dimeric_15_1 SELEX + 16921682 16921696 3.0E-06 AACAAGAGCATAGTT 15 SOX2_HMG_full_dimeric_17_1 SELEX + 16921681 16921697 8.0E-06 AAACAAGAGCATAGTTA 17 RFX4_RFX_DBD_dimeric_16_1 SELEX - 16917864 16917879 8.0E-06 TATAACTTTGGTAACC 16 POU1F1_POU_DBD_monomeric_14_1 SELEX + 16917915 16917928 1.0E-06 ATAATGCAAATTTA 14 Sox17_HMG_DBD_dimeric_15_1 SELEX + 16921682 16921696 5.0E-06 AACAAGAGCATAGTT 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 16917916 16917926 5.0E-06 TAATGCAAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 16917917 16917925 7.0E-06 AATGCAAAT 9 Pax4_MA0068.1 JASPAR + 16921631 16921660 5.0E-06 GATTTATAGACACACACACACACACCTGAC 30 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 16918168 16918177 5.0E-06 TGCAATAAAA 10 POU3F3_POU_DBD_monomeric_13_1 SELEX + 16917915 16917927 0.0E+00 ATAATGCAAATTT 13 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 16918168 16918176 3.0E-06 GCAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 16918167 16918176 2.0E-06 GCAATAAAAA 10 HSF4_HSF_DBD_trimeric_13_1 SELEX + 16921600 16921612 4.0E-06 TTCTGGATGTTTC 13 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 16918167 16918177 1.0E-06 TGCAATAAAAA 11 POU2F3_POU_DBD_dimeric_12_1 SELEX - 16917918 16917929 8.0E-06 ATAAATTTGCAT 12 SOX18_HMG_full_dimeric_15_1 SELEX + 16921682 16921696 4.0E-06 AACAAGAGCATAGTT 15 SOX15_HMG_full_dimeric_15_1 SELEX + 16921682 16921696 3.0E-06 AACAAGAGCATAGTT 15 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 16921657 16921670 9.0E-06 GAGGTTGTAGGTCA 14 SOX7_HMG_full_dimeric_17_1 SELEX + 16921681 16921697 5.0E-06 AAACAAGAGCATAGTTA 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 16918167 16918176 2.0E-06 GCAATAAAAA 10 POU3F1_POU_DBD_monomeric_12_1 SELEX + 16917916 16917927 1.0E-06 TAATGCAAATTT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 16917918 16917929 8.0E-06 ATAAATTTGCAT 12 POU2F1_POU_DBD_monomeric_12_1 SELEX + 16917915 16917926 2.0E-06 ATAATGCAAATT 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 16918167 16918176 2.0E-06 GCAATAAAAA 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 16918167 16918174 4.0E-06 AATAAAAA 8 Sox3_HMG_DBD_dimeric_17_1 SELEX + 16917923 16917939 8.0E-06 AATTTATGTTATTGTTT 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 16917923 16917939 4.0E-06 AAACAATAACATAAATT 17 Sox3_HMG_DBD_dimeric_17_1 SELEX + 16921681 16921697 3.0E-06 AAACAAGAGCATAGTTA 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 16921681 16921697 4.0E-06 TAACTATGCTCTTGTTT 17 POU3F2_POU_DBD_monomeric_12_1 SELEX + 16917916 16917927 1.0E-06 TAATGCAAATTT 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 16918167 16918177 4.0E-06 TGCAATAAAAA 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 16918168 16918176 3.0E-06 GCAATAAAA 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 16917929 16917941 3.0E-06 GCAAACAATAACA 13 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 16918168 16918176 3.0E-06 GCAATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 16918167 16918177 1.0E-06 TGCAATAAAAA 11 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 16918167 16918176 4.0E-06 GCAATAAAAA 10 V_NFAT_Q4_01_M00935 TRANSFAC + 16921547 16921556 2.0E-06 CTGGAAAATT 10 V_FOXP1_01_M00987 TRANSFAC + 16917922 16917941 7.0E-06 AAATTTATGTTATTGTTTGC 20 V_FOXP1_01_M00987 TRANSFAC + 16917928 16917947 5.0E-06 ATGTTATTGTTTGCTAGTTG 20 V_XVENT1_01_M00445 TRANSFAC - 16921713 16921725 8.0E-06 AGCCTATTTTTCT 13 V_POU3F3_01_M03090 TRANSFAC - 16917912 16917928 4.0E-06 TAAATTTGCATTATCTT 17 V_CEBP_Q3_M00770 TRANSFAC + 16917901 16917912 2.0E-06 TATTTTGGCAAA 12 V_HMGIY_Q3_M01010 TRANSFAC + 16917917 16917931 2.0E-06 AATGCAAATTTATGT 15 V_HMGIY_Q3_M01010 TRANSFAC - 16917986 16918000 2.0E-06 AATGGATTTTTTAAA 15 V_BCL6_01_M01183 TRANSFAC - 16921702 16921717 1.0E-06 TTTCTAAGTTTGTTTT 16 V_MMEF2_Q6_M00405 TRANSFAC + 16917958 16917973 1.0E-06 CTGCCTAAAATAAACT 16 V_MMEF2_Q6_M00405 TRANSFAC + 16921612 16921627 6.0E-06 CTGGTTAAAAATGGGT 16 V_MMEF2_Q6_M00405 TRANSFAC - 16921628 16921643 8.0E-06 GTGTCTATAAATCCAC 16 V_SOX5_01_M00042 TRANSFAC - 16917931 16917940 7.0E-06 CAAACAATAA 10 V_MAFB_03_M02879 TRANSFAC - 16918167 16918181 2.0E-06 CCATTGCAATAAAAA 15 V_OCT1_Q5_01_M00930 TRANSFAC - 16917917 16917927 2.0E-06 AAATTTGCATT 11 V_OCTAMER_01_M01324 TRANSFAC - 16917912 16917928 4.0E-06 TAAATTTGCATTATCTT 17 V_NFAT3_Q3_M01734 TRANSFAC - 16921548 16921557 7.0E-06 AAATTTTCCA 10 V_OCT1_01_M00135 TRANSFAC + 16917912 16917930 1.0E-06 AAGATAATGCAAATTTATG 19 V_POU2F3_01_M01476 TRANSFAC + 16917914 16917929 3.0E-06 GATAATGCAAATTTAT 16 V_POU3F2_02_M00464 TRANSFAC + 16917926 16917935 9.0E-06 TTATGTTATT 10 V_HFH4_01_M00742 TRANSFAC - 16921702 16921714 2.0E-06 CTAAGTTTGTTTT 13 V_PU1_Q4_M01172 TRANSFAC + 16918153 16918171 6.0E-06 AGGCCTCTTTTCCTTTTTT 19 V_HOXD13_01_M01404 TRANSFAC - 16918164 16918179 8.0E-06 ATTGCAATAAAAAAGG 16 V_TCFAP2E_04_M02926 TRANSFAC + 16921708 16921721 9.0E-06 AACTTAGAAAAATA 14 V_ELF4_04_M02850 TRANSFAC + 16917984 16918000 8.0E-06 GTTTTAAAAAATCCATT 17 V_SOX7_03_M02807 TRANSFAC - 16917924 16917945 3.0E-06 ACTAGCAAACAATAACATAAAT 22 V_HELIOSA_02_M01004 TRANSFAC - 16918159 16918169 6.0E-06 AAAAGGAAAAG 11 V_FOXA2_02_M02853 TRANSFAC - 16917924 16917938 5.0E-06 AACAATAACATAAAT 15 V_ZFP105_03_M02827 TRANSFAC - 16917928 16917942 8.0E-06 AGCAAACAATAACAT 15 V_ZFP105_03_M02827 TRANSFAC - 16918163 16918177 7.0E-06 TGCAATAAAAAAGGA 15 V_HOXB13_01_M01467 TRANSFAC - 16918164 16918179 9.0E-06 ATTGCAATAAAAAAGG 16 V_STAT1_01_M00224 TRANSFAC - 16921689 16921709 7.0E-06 TTTGTTTTCCGGTAACTATGC 21 V_FOXK1_04_M02856 TRANSFAC - 16917926 16917940 0.0E+00 CAAACAATAACATAA 15 V_CDX2_Q5_M00729 TRANSFAC + 16918164 16918177 8.0E-06 CCTTTTTTATTGCA 14 V_TTF1_Q6_M00794 TRANSFAC - 16918132 16918143 3.0E-06 CTCTCAAGAGGT 12 V_OCT1_04_M00138 TRANSFAC + 16917910 16917932 0.0E+00 AAAAGATAATGCAAATTTATGTT 23 V_OCT1_B_M00342 TRANSFAC + 16917917 16917926 4.0E-06 AATGCAAATT 10 V_OCT_Q6_M00795 TRANSFAC - 16917917 16917927 3.0E-06 AAATTTGCATT 11 V_FOXO1_Q5_M01216 TRANSFAC + 16921701 16921709 5.0E-06 GAAAACAAA 9 V_MTF1_06_M02882 TRANSFAC + 16921708 16921721 2.0E-06 AACTTAGAAAAATA 14 V_POU5F1_01_M01307 TRANSFAC + 16917917 16917926 1.0E-06 AATGCAAATT 10 V_FAC1_01_M00456 TRANSFAC - 16917925 16917938 4.0E-06 AACAATAACATAAA 14 V_CEBPA_01_M00116 TRANSFAC - 16921535 16921548 0.0E+00 AGATTACTTAATCA 14 V_OCT2_01_M01368 TRANSFAC + 16917914 16917929 2.0E-06 GATAATGCAAATTTAT 16 V_HNF1_01_M00132 TRANSFAC + 16917929 16917943 6.0E-06 TGTTATTGTTTGCTA 15 V_FOXJ3_06_M02855 TRANSFAC - 16917896 16917912 7.0E-06 TTTGCCAAAATAATGGA 17 V_AIRE_01_M00999 TRANSFAC + 16918171 16918196 7.0E-06 TATTGCAATGGCAAGGTTGGAAGAAA 26 V_TCF7_04_M02921 TRANSFAC + 16917982 16917996 5.0E-06 CTGTTTTAAAAAATC 15 V_OCT1_07_M00248 TRANSFAC + 16917915 16917926 4.0E-06 ATAATGCAAATT 12 V_SOX14_04_M02901 TRANSFAC + 16921619 16921635 3.0E-06 AAAATGGGTGTGGATTT 17 V_SRF_06_M02916 TRANSFAC + 16917984 16918000 3.0E-06 GTTTTAAAAAATCCATT 17 V_HNF3B_Q6_M02014 TRANSFAC + 16917934 16917942 6.0E-06 TTGTTTGCT 9 V_RXRLXRB_01_M01198 TRANSFAC - 16921657 16921669 5.0E-06 AGGTTGTAGGTCA 13 V_CEBP_Q2_01_M00912 TRANSFAC - 16921535 16921546 8.0E-06 ATTACTTAATCA 12 V_HOXD10_01_M01375 TRANSFAC - 16918163 16918179 2.0E-06 ATTGCAATAAAAAAGGA 17 V_TCF3_05_M02920 TRANSFAC + 16917959 16917973 2.0E-06 TGCCTAAAATAAACT 15 V_RFX1_02_M00281 TRANSFAC - 16917863 16917880 4.0E-06 CTATAACTTTGGTAACCA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.