Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZC2HC1B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 153918 zinc finger, C2HC-type containing 1B chr6 + 144180572 - 144186072 144185572 Transcription Factor Binding Sites   Download all TFBS in the ZC2HC1B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 144181627 144181635 3.0E-06 CCACTTGAA 9 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 144188444 144188451 5.0E-06 ATAAACAA 8 SOX10_HMG_full_dimeric_16_1 SELEX - 144188410 144188425 5.0E-06 AACAAGATGTTGTGTT 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 144185058 144185075 6.0E-06 TCTATTTACAGCAAATTA 18 SOX9_HMG_full_dimeric_16_1 SELEX - 144188410 144188425 7.0E-06 AACAAGATGTTGTGTT 16 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 144181669 144181680 9.0E-06 ACTATAAAGAGA 12 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 144185057 144185074 5.0E-06 TTAATTTGCTGTAAATAG 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 144185057 144185074 9.0E-06 CTATTTACAGCAAATTAA 18 FOXL1_forkhead_full_dimeric_13_1 SELEX + 144188443 144188455 4.0E-06 AATAAACAAACTT 13 SOX8_HMG_DBD_dimeric_16_1 SELEX - 144188410 144188425 2.0E-06 AACAAGATGTTGTGTT 16 Tp73_p53l_DBD_dimeric_18_1 SELEX + 144190059 144190076 1.0E-05 TACACGTGTGTACATGCA 18 IRF7_IRF_DBD_trimeric_17_1 SELEX - 144185481 144185497 2.0E-06 AAAACAAAAATCAACTC 17 Pax4_MA0068.1 JASPAR - 144188651 144188680 9.0E-06 GAAAATATAAAACAAGAATGCAATCCTCTA 30 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 144181573 144181586 4.0E-06 ATCATCATCATATT 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 144181576 144181589 0.0E+00 TTCATCATCATCAT 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 144185058 144185073 1.0E-05 TAATTTGCTGTAAATA 16 RARG_nuclearreceptor_full_dimeric_18_1 SELEX - 144188687 144188704 0.0E+00 GAGGTCAGGGTGAGTTTA 18 IRF1_MA0050.1 JASPAR - 144188422 144188433 5.0E-06 CAAAATGAAACA 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 144185058 144185073 9.0E-06 TAATTTGCTGTAAATA 16 Foxq1_MA0040.1 JASPAR - 144188443 144188453 8.0E-06 GTTTGTTTATT 11 MEF2A_MA0052.1 JASPAR - 144181670 144181679 9.0E-06 CTCTTTATAG 10 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX - 144188687 144188703 5.0E-06 AGGTCAGGGTGAGTTTA 17 ESR1_MA0112.2 JASPAR + 144188684 144188703 2.0E-06 TTCTAAACTCACCCTGACCT 20 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 144188698 144188713 9.0E-06 TGACCTCTCAAGATCA 16 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 144185543 144185556 6.0E-06 AAATAATCAACAAT 14 FOXI1_MA0042.1 JASPAR - 144188442 144188453 0.0E+00 GTTTGTTTATTT 12 RARA_nuclearreceptor_full_dimeric_17_1 SELEX - 144188687 144188703 8.0E-06 AGGTCAGGGTGAGTTTA 17 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 144181580 144181592 8.0E-06 TGATGATGAAATT 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 144188444 144188454 4.0E-06 ATAAACAAACT 11 SOX7_HMG_full_dimeric_16_1 SELEX - 144188410 144188425 7.0E-06 AACAAGATGTTGTGTT 16 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 144181627 144181636 8.0E-06 TCCACTTGAA 10 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 144185540 144185554 1.0E-05 ACAATTGTTGATTAT 15 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 144188474 144188488 9.0E-06 CTAATTGGTAGCAAA 15 Foxd3_MA0041.1 JASPAR - 144188442 144188453 0.0E+00 GTTTGTTTATTT 12 Stat3_MA0144.1 JASPAR + 144181647 144181656 9.0E-06 TTACAGGAAG 10 ETV6_ETS_full_dimeric_15_1 SELEX - 144188535 144188549 4.0E-06 CTGGAAATGGAAGTC 15 Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 144188444 144188451 5.0E-06 ATAAACAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 144188442 144188454 0.0E+00 AAATAAACAAACT 13 FOXO6_forkhead_DBD_dimeric_14_1 SELEX + 144190058 144190071 9.0E-06 GTACACGTGTGTAC 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 144185543 144185556 6.0E-06 AAATAATCAACAAT 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 144190058 144190071 8.0E-06 GTACACGTGTGTAC 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 144185545 144185558 5.0E-06 CCAAATAATCAACA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 144188667 144188680 9.0E-06 GAAAATATAAAACA 14 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 144188409 144188420 8.0E-06 AAACACAACATC 12 V_CDP_03_M01342 TRANSFAC - 144185543 144185559 5.0E-06 ACCAAATAATCAACAAT 17 RXR_RAR_DR5_MA0159.1 JASPAR - 144188687 144188703 1.0E-06 AGGTCAGGGTGAGTTTA 17 V_STAT5A_Q6_M01890 TRANSFAC + 144185137 144185149 1.0E-06 GTTTTTCTGAGAA 13 V_DBX1_01_M01483 TRANSFAC - 144185541 144185557 3.0E-06 CAAATAATCAACAATTG 17 V_CHOP_01_M00249 TRANSFAC - 144188653 144188665 1.0E-06 GAATGCAATCCTC 13 V_FOXA2_04_M02749 TRANSFAC + 144188439 144188455 5.0E-06 CTGAAATAAACAAACTT 17 V_NRSF_Q4_M01028 TRANSFAC + 144188518 144188536 9.0E-06 GAACAGTCCCTGGGTCTGA 19 V_RHOX11_01_M01347 TRANSFAC + 144185059 144185075 0.0E+00 AATTTGCTGTAAATAGA 17 V_ESR1_01_M02261 TRANSFAC + 144188684 144188703 2.0E-06 TTCTAAACTCACCCTGACCT 20 V_CEBP_Q3_M00770 TRANSFAC + 144185551 144185562 2.0E-06 TTATTTGGTAAA 12 V_SOX30_03_M02804 TRANSFAC - 144185537 144185552 3.0E-06 AATCAACAATTGTGAT 16 V_FOXD3_01_M00130 TRANSFAC - 144188442 144188453 0.0E+00 GTTTGTTTATTT 12 V_BCL6_01_M01183 TRANSFAC + 144185048 144185063 4.0E-06 TTACATGGTTTAATTT 16 V_FOXO4_02_M00476 TRANSFAC - 144188441 144188454 7.0E-06 AGTTTGTTTATTTC 14 V_STAT_Q6_M00777 TRANSFAC + 144185136 144185148 7.0E-06 AGTTTTTCTGAGA 13 V_HOXA13_02_M01297 TRANSFAC - 144188668 144188676 7.0E-06 ATATAAAAC 9 V_SPDEF_04_M02915 TRANSFAC - 144185609 144185624 1.0E-05 GATAACATCATACTAG 16 V_SRY_02_M00160 TRANSFAC - 144185487 144185498 4.0E-06 TAAAACAAAAAT 12 V_CEBP_01_M00159 TRANSFAC + 144185552 144185564 0.0E+00 TATTTGGTAAACT 13 V_FOXO3A_Q1_M01137 TRANSFAC + 144188443 144188454 6.0E-06 AATAAACAAACT 12 V_CUX1_03_M02958 TRANSFAC - 144185543 144185559 5.0E-06 ACCAAATAATCAACAAT 17 V_FOXJ1_03_M02750 TRANSFAC - 144185539 144185554 9.0E-06 ATAATCAACAATTGTG 16 V_FOXJ1_03_M02750 TRANSFAC + 144188441 144188456 0.0E+00 GAAATAAACAAACTTA 16 V_HFH4_01_M00742 TRANSFAC - 144188445 144188457 0.0E+00 CTAAGTTTGTTTA 13 V_TR4_Q2_M01725 TRANSFAC + 144188696 144188706 3.0E-06 CCTGACCTCTC 11 V_FOXP3_01_M01599 TRANSFAC + 144188444 144188451 5.0E-06 ATAAACAA 8 V_MEF2A_Q6_M02024 TRANSFAC + 144186605 144186614 4.0E-06 TATTTAAAAA 10 V_RHOX11_02_M01384 TRANSFAC + 144185059 144185075 0.0E+00 AATTTGCTGTAAATAGA 17 V_CETS1P54_02_M00074 TRANSFAC + 144181647 144181659 9.0E-06 TTACAGGAAGTTT 13 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 144188463 144188477 1.0E-06 TGAGGTCAGTGTTTG 15 V_PITX1_Q6_M01826 TRANSFAC - 144185580 144185590 6.0E-06 ACCACTAATCT 11 V_ELF4_04_M02850 TRANSFAC - 144185484 144185500 3.0E-06 GTTAAAACAAAAATCAA 17 V_SOX7_03_M02807 TRANSFAC - 144185534 144185555 3.0E-06 AATAATCAACAATTGTGATGAT 22 V_ZFP105_03_M02827 TRANSFAC - 144185485 144185499 2.0E-06 TTAAAACAAAAATCA 15 V_ZFP105_03_M02827 TRANSFAC - 144185541 144185555 0.0E+00 AATAATCAACAATTG 15 V_ZFP105_03_M02827 TRANSFAC - 144188663 144188677 2.0E-06 AATATAAAACAAGAA 15 V_GFI1_01_M00250 TRANSFAC - 144185490 144185513 9.0E-06 AAAGTTTAAATCAGTTAAAACAAA 24 V_GATA3_05_M02859 TRANSFAC + 144185609 144185630 7.0E-06 CTAGTATGATGTTATCTGGACT 22 Ddit3_Cebpa_MA0019.1 JASPAR - 144188654 144188665 3.0E-06 GAATGCAATCCT 12 V_CEBPD_Q6_M00621 TRANSFAC - 144181581 144181592 1.0E-06 AATTTCATCATC 12 V_RSRFC4_Q2_M00407 TRANSFAC + 144185062 144185078 6.0E-06 TTGCTGTAAATAGAAAA 17 V_FOXK1_04_M02856 TRANSFAC + 144188407 144188421 8.0E-06 TTAAACACAACATCT 15 V_HNF3_Q6_M00791 TRANSFAC + 144188444 144188456 9.0E-06 ATAAACAAACTTA 13 V_IRF_Q6_M00772 TRANSFAC + 144188419 144188433 9.0E-06 TCTTGTTTCATTTTG 15 V_CDX2_Q5_M00729 TRANSFAC - 144185632 144185645 6.0E-06 AGATTTTTACAGCC 14 V_NKX22_02_M01372 TRANSFAC - 144181623 144181639 2.0E-06 CTGTCCACTTGAATAGA 17 V_NKX22_02_M01372 TRANSFAC + 144188386 144188402 6.0E-06 AAAGCCACTTGTATAGT 17 V_MEF2_03_M00232 TRANSFAC + 144185058 144185079 0.0E+00 TAATTTGCTGTAAATAGAAAAG 22 V_SOX18_03_M02801 TRANSFAC + 144185539 144185554 4.0E-06 CACAATTGTTGATTAT 16 V_MEF2_04_M00233 TRANSFAC + 144185058 144185079 1.0E-06 TAATTTGCTGTAAATAGAAAAG 22 V_ERALPHA_01_M01801 TRANSFAC + 144188689 144188703 8.0E-06 AACTCACCCTGACCT 15 V_ERALPHA_01_M01801 TRANSFAC - 144188689 144188703 6.0E-06 AGGTCAGGGTGAGTT 15 V_PNR_01_M01650 TRANSFAC - 144185559 144185572 6.0E-06 GAAGTCATAGTTTA 14 V_HFH1_01_M00129 TRANSFAC - 144188442 144188453 1.0E-06 GTTTGTTTATTT 12 V_STAT4_Q5_M02117 TRANSFAC - 144185140 144185149 9.0E-06 TTCTCAGAAA 10 V_TBP_06_M02814 TRANSFAC + 144186601 144186616 5.0E-06 CTTGTATTTAAAAATC 16 V_TBP_06_M02814 TRANSFAC - 144188666 144188681 7.0E-06 AGAAAATATAAAACAA 16 V_SOX11_03_M02795 TRANSFAC - 144185484 144185500 9.0E-06 GTTAAAACAAAAATCAA 17 V_FOXO1_Q5_M01216 TRANSFAC + 144188444 144188452 2.0E-06 ATAAACAAA 9 V_HFH8_01_M00294 TRANSFAC - 144188441 144188453 3.0E-06 GTTTGTTTATTTC 13 V_SOX15_03_M02799 TRANSFAC - 144185537 144185553 6.0E-06 TAATCAACAATTGTGAT 17 V_SOX15_03_M02799 TRANSFAC + 144188429 144188445 9.0E-06 TTTTGAACAACTGAAAT 17 V_GATA1_05_M00346 TRANSFAC - 144185618 144185627 5.0E-06 CCAGATAACA 10 V_MTF1_06_M02882 TRANSFAC - 144188665 144188678 1.0E-06 AAATATAAAACAAG 14 V_NKX25_03_M01414 TRANSFAC - 144181624 144181639 7.0E-06 CTGTCCACTTGAATAG 16 V_NKX25_03_M01414 TRANSFAC + 144188386 144188401 6.0E-06 AAAGCCACTTGTATAG 16 V_IPF1_05_M01255 TRANSFAC - 144181657 144181668 7.0E-06 AGTCATTCAAAA 12 V_FOXL1_02_M02857 TRANSFAC - 144185487 144185502 2.0E-06 CAGTTAAAACAAAAAT 16 V_FOXL1_02_M02857 TRANSFAC - 144188662 144188677 4.0E-06 AATATAAAACAAGAAT 16 V_FOXL1_04_M02753 TRANSFAC - 144185540 144185556 5.0E-06 AAATAATCAACAATTGT 17 V_FOXL1_04_M02753 TRANSFAC + 144188439 144188455 3.0E-06 CTGAAATAAACAAACTT 17 V_GFI1B_01_M01058 TRANSFAC - 144185496 144185507 6.0E-06 TAAATCAGTTAA 12 V_RHOX11_05_M03099 TRANSFAC + 144185059 144185075 0.0E+00 AATTTGCTGTAAATAGA 17 V_DMRT7_01_M01151 TRANSFAC + 144188421 144188434 3.0E-06 TTGTTTCATTTTGA 14 V_FOXO3_01_M00477 TRANSFAC - 144188441 144188454 6.0E-06 AGTTTGTTTATTTC 14 V_RSRFC4_01_M00026 TRANSFAC - 144185062 144185077 9.0E-06 TTTCTATTTACAGCAA 16 V_PLZF_02_M01075 TRANSFAC + 144185494 144185522 1.0E-06 TTTTAACTGATTTAAACTTTTTCAAGGTT 29 V_PLZF_02_M01075 TRANSFAC + 144185547 144185575 0.0E+00 TTGATTATTTGGTAAACTATGACTTCTTG 29 V_OSR1_04_M02888 TRANSFAC + 144188473 144188488 6.0E-06 GTTTGCTACCAATTAG 16 V_RXR_RAR_01_M02272 TRANSFAC - 144188687 144188703 1.0E-06 AGGTCAGGGTGAGTTTA 17 V_SOX8_03_M02808 TRANSFAC + 144185537 144185553 9.0E-06 ATCACAATTGTTGATTA 17 V_SRF_06_M02916 TRANSFAC - 144185484 144185500 1.0E-06 GTTAAAACAAAAATCAA 17 V_SRF_06_M02916 TRANSFAC - 144185485 144185501 4.0E-06 AGTTAAAACAAAAATCA 17 V_HFH3_01_M00289 TRANSFAC - 144188441 144188453 5.0E-06 GTTTGTTTATTTC 13 V_FOXJ2_01_M00422 TRANSFAC + 144188438 144188455 2.0E-06 ACTGAAATAAACAAACTT 18 V_FOXO1_04_M01969 TRANSFAC + 144188406 144188425 6.0E-06 CTTAAACACAACATCTTGTT 20 V_FOXO1_01_M00473 TRANSFAC + 144188443 144188452 0.0E+00 AATAAACAAA 10 V_HNF3B_Q6_M02014 TRANSFAC - 144188443 144188451 6.0E-06 TTGTTTATT 9 V_SOX12_03_M02796 TRANSFAC + 144185488 144185501 7.0E-06 TTTTTGTTTTAACT 14 V_FOXO4_01_M00472 TRANSFAC + 144188444 144188454 1.0E-06 ATAAACAAACT 11 V_CMAF_01_M01070 TRANSFAC + 144185472 144185490 9.0E-06 GTTTTTGATGAGTTGATTT 19 V_RHOX11_06_M03100 TRANSFAC + 144185059 144185075 0.0E+00 AATTTGCTGTAAATAGA 17 V_TCF3_05_M02920 TRANSFAC - 144188670 144188684 7.0E-06 AGCAGAAAATATAAA 15 V_FOXK1_03_M02752 TRANSFAC + 144188439 144188455 4.0E-06 CTGAAATAAACAAACTT 17 V_T3RALPHA_Q6_M01724 TRANSFAC + 144188461 144188471 1.0E-06 TTTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.