Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZMAT2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 153527 zinc finger, matrin-type 2 chr5 + 140075031 - 140080531 140080031 Transcription Factor Binding Sites   Download all TFBS in the ZMAT2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ZNF306_C2H2_full_monomeric_14_1 SELEX - 140080257 140080270 6.0E-06 TGAGGTAGCCTCAA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 140079670 140079686 5.0E-06 GCCTTAAAAAAGGTTTA 17 ELF4_ETS_full_monomeric_12_1 SELEX - 140079841 140079852 4.0E-06 AACACGGAAGTA 12 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 140076619 140076627 6.0E-06 TATTCAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 140076619 140076627 6.0E-06 TATTCAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 140076619 140076627 4.0E-06 TATTCAAAT 9 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 140076675 140076689 4.0E-06 GACCTCCTGCTGAGC 15 POU3F3_POU_DBD_monomeric_13_1 SELEX - 140082564 140082576 4.0E-06 TTTAGGTTAATTT 13 ELF3_ETS_full_monomeric_13_1 SELEX - 140079840 140079852 0.0E+00 AACACGGAAGTAA 13 ZIC3_C2H2_full_monomeric_15_1 SELEX + 140076675 140076689 2.0E-06 GACCTCCTGCTGAGC 15 SOX9_HMG_full_dimeric_16_3 SELEX + 140082666 140082681 7.0E-06 ATGAAGCTGCAATCAA 16 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX + 140079867 140079883 5.0E-06 TTGCGCCTGCGCTGTCT 17 Evi1_MA0029.1 JASPAR - 140076730 140076743 4.0E-06 GGGACAAGATTACA 14 EHF_ETS_full_monomeric_12_1 SELEX - 140079841 140079852 1.0E-06 AACACGGAAGTA 12 ELF5_ETS_full_monomeric_11_1 SELEX - 140079841 140079851 2.0E-06 ACACGGAAGTA 11 ELF1_ETS_full_monomeric_12_1 SELEX - 140079841 140079852 1.0E-06 AACACGGAAGTA 12 ELF3_ETS_DBD_monomeric_12_1 SELEX - 140079841 140079852 1.0E-06 AACACGGAAGTA 12 NRF1_NRF_full_dimeric_12_1 SELEX + 140079868 140079879 1.0E-05 TGCGCCTGCGCT 12 ZIC1_C2H2_full_monomeric_14_1 SELEX + 140076675 140076688 3.0E-06 GACCTCCTGCTGAG 14 V_PAX4_03_M00378 TRANSFAC - 140080095 140080106 7.0E-06 ATTCCCCACCCC 12 V_SOX30_03_M02804 TRANSFAC + 140079819 140079834 7.0E-06 AAAAAACAATTGCAAG 16 V_EVI1_04_M00081 TRANSFAC + 140079676 140079690 7.0E-06 AAAAAGGTTTAGAAA 15 V_BCL6_01_M01183 TRANSFAC - 140082574 140082589 8.0E-06 TATGCTGCTAAGCTTT 16 V_MAFB_05_M02775 TRANSFAC + 140076641 140076657 8.0E-06 GGAATTGCTGATAAGGT 17 V_MAFB_03_M02879 TRANSFAC + 140079759 140079773 4.0E-06 TGTTTGTAAAATAGT 15 V_NR2F2_03_M02783 TRANSFAC - 140079782 140079797 3.0E-06 ATTAAAGGGTCAAGAT 16 V_POU3F2_02_M00464 TRANSFAC - 140082566 140082575 9.0E-06 TTAGGTTAAT 10 V_SPZ1_01_M00446 TRANSFAC + 140080081 140080095 8.0E-06 GGAGGAGGTTTTGCG 15 V_HNF4A_04_M02764 TRANSFAC - 140079781 140079797 7.0E-06 ATTAAAGGGTCAAGATT 17 V_TAL1_GATA1_01_M02243 TRANSFAC + 140076638 140076655 4.0E-06 TTTGGAATTGCTGATAAG 18 V_CEBPE_Q6_M01868 TRANSFAC - 140079682 140079695 3.0E-06 AAGAATTTCTAAAC 14 V_ZFP105_03_M02827 TRANSFAC + 140079816 140079830 4.0E-06 GGCAAAAAACAATTG 15 V_TBX18_01_M01262 TRANSFAC - 140076612 140076630 7.0E-06 AGGTATTCAAATAGCAGCT 19 V_RXRA_03_M02791 TRANSFAC + 140079781 140079797 2.0E-06 AATCTTGACCCTTTAAT 17 V_EVI1_01_M00078 TRANSFAC - 140076727 140076742 6.0E-06 GGACAAGATTACAGTC 16 V_AP2BETA_Q3_M01858 TRANSFAC + 140080049 140080064 5.0E-06 GCGTCGGGCAGCGGGG 16 V_HNF1_Q6_01_M01011 TRANSFAC + 140082555 140082575 1.0E-06 TAAATTAACAAATTAACCTAA 21 V_GR_01_M00955 TRANSFAC - 140079940 140079966 6.0E-06 AAGCTTGGAGTCTTGTGTTCTAAACGA 27 Tal1_Gata1_MA0140.1 JASPAR + 140076638 140076655 4.0E-06 TTTGGAATTGCTGATAAG 18 V_ZIC3_05_M02941 TRANSFAC - 140076677 140076691 1.0E-05 GAGCTCAGCAGGAGG 15 V_SRF_Q5_02_M01007 TRANSFAC + 140076628 140076646 6.0E-06 CCTGACTTTATTTGGAATT 19 V_EVI1_06_M00011 TRANSFAC - 140076732 140076740 7.0E-06 ACAAGATTA 9 V_HOXD9_Q2_M01834 TRANSFAC - 140079792 140079801 8.0E-06 AAGCATTAAA 10 V_BCL6B_04_M02844 TRANSFAC - 140080090 140080105 7.0E-06 TTCCCCACCCCGCAAA 16 V_EHF_03_M02052 TRANSFAC - 140079841 140079850 7.0E-06 CACGGAAGTA 10 V_EHF_06_M02745 TRANSFAC - 140079840 140079854 3.0E-06 GCAACACGGAAGTAA 15 V_FAC1_01_M00456 TRANSFAC - 140080065 140080078 5.0E-06 AGACACAACACCTA 14 V_TCF7_04_M02921 TRANSFAC - 140079758 140079772 3.0E-06 CTATTTTACAAACAA 15 V_TCF7_04_M02921 TRANSFAC + 140079912 140079926 6.0E-06 CTGTTTTAGAAACCC 15 V_ZFP206_01_M01742 TRANSFAC + 140079868 140079878 8.0E-06 TGCGCCTGCGC 11 V_SRF_01_M00152 TRANSFAC + 140076629 140076646 5.0E-06 CTGACTTTATTTGGAATT 18 V_ESE1_02_M02055 TRANSFAC - 140079841 140079850 7.0E-06 CACGGAAGTA 10 V_SOX8_03_M02808 TRANSFAC - 140079818 140079834 9.0E-06 CTTGCAATTGTTTTTTG 17 V_FOXO1_01_M00473 TRANSFAC + 140079819 140079828 3.0E-06 AAAAAACAAT 10 V_GATA5_03_M02756 TRANSFAC + 140076644 140076660 1.0E-06 ATTGCTGATAAGGTAAG 17 V_TCF3_05_M02920 TRANSFAC + 140079815 140079829 1.0E-06 AGGCAAAAAACAATT 15 V_ESE1_Q3_M01214 TRANSFAC - 140079841 140079850 7.0E-06 CACGGAAGTA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.