Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CTRL Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1506 chymotrypsin-like chr16 - 67965278 - 67970778 67965778 Transcription Factor Binding Sites   Download all TFBS in the CTRL promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 67962554 67962572 4.0E-06 CAGACACCAGATGGCGCCT 19 IRF7_IRF_DBD_dimeric_14_1 SELEX - 67970763 67970776 1.0E-06 GCGAAAGCGAAAGC 14 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 67969437 67969449 9.0E-06 CCAAGGTCACAGG 13 IRF8_IRF_full_dimeric_14_1 SELEX - 67970763 67970776 1.0E-06 GCGAAAGCGAAAGC 14 HINFP1_C2H2_full_monomeric_12_1 SELEX + 67969975 67969986 1.0E-05 CGGCGTCCGCGG 12 Esrrb_MA0141.1 JASPAR + 67969434 67969445 1.0E-06 AGGCCAAGGTCA 12 Pax4_MA0068.1 JASPAR - 67970058 67970087 7.0E-06 AAAAAAGAACGGCCCCCTCGTTCCCACTCC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX - 67970755 67970768 6.0E-06 GAAAGCAGGAAGTA 14 IRF1_MA0050.1 JASPAR - 67970763 67970774 1.0E-06 GAAAGCGAAAGC 12 ELF3_ETS_full_monomeric_13_1 SELEX - 67970754 67970766 5.0E-06 AAGCAGGAAGTAC 13 CTCF_C2H2_full_monomeric_17_1 SELEX + 67962555 67962571 2.0E-06 GGCGCCATCTGGTGTCT 17 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 67969439 67969454 4.0E-06 AAGGTCACAGGGGCAG 16 PRDM4_C2H2_full_monomeric_13_1 SELEX + 67970426 67970438 2.0E-06 TTTCAAGACCCCT 13 Mycn_MA0104.2 JASPAR + 67969583 67969592 8.0E-06 CCCACGTGGC 10 IRF9_IRF_full_trimeric_15_1 SELEX - 67970763 67970777 3.0E-06 GGCGAAAGCGAAAGC 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 67970761 67970775 3.0E-06 CGAAAGCGAAAGCAG 15 GSC_homeodomain_full_monomeric_10_1 SELEX - 67970668 67970677 8.0E-06 CCTAATCCCC 10 EHF_ETS_full_monomeric_12_1 SELEX - 67970755 67970766 4.0E-06 AAGCAGGAAGTA 12 ELF5_ETS_full_monomeric_11_1 SELEX - 67970755 67970765 6.0E-06 AGCAGGAAGTA 11 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 67969437 67969447 6.0E-06 CCAAGGTCACA 11 GSC2_homeodomain_DBD_monomeric_10_1 SELEX - 67970668 67970677 7.0E-06 CCTAATCCCC 10 ELF3_ETS_DBD_monomeric_12_1 SELEX - 67970755 67970766 4.0E-06 AAGCAGGAAGTA 12 IRF4_IRF_full_dimeric_15_1 SELEX - 67970762 67970776 1.0E-06 GCGAAAGCGAAAGCA 15 SPI1_ETS_full_monomeric_14_1 SELEX - 67970755 67970768 6.0E-06 GAAAGCAGGAAGTA 14 IRF3_IRF_full_trimeric_21_1 SELEX - 67970762 67970782 2.0E-06 GTAAAGGCGAAAGCGAAAGCA 17 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 67969439 67969453 7.0E-06 AAGGTCACAGGGGCA 15 IRF2_MA0051.1 JASPAR - 67970758 67970775 0.0E+00 CGAAAGCGAAAGCAGGAA 18 V_ELF5_03_M02057 TRANSFAC + 67970529 67970538 8.0E-06 CCAGGAAAAA 10 V_SPI1_01_M01203 TRANSFAC - 67970752 67970768 2.0E-06 GAAAGCAGGAAGTACAG 17 V_AHR_Q5_M00778 TRANSFAC + 67970334 67970344 2.0E-06 CTTGCGTGCGT 11 V_ZFP410_04_M02936 TRANSFAC + 67969675 67969691 4.0E-06 TATCCCCGCCCCTTCCT 17 V_LRH1_Q5_01_M02098 TRANSFAC + 67969435 67969445 9.0E-06 GGCCAAGGTCA 11 V_CBF_02_M01080 TRANSFAC + 67969959 67969974 1.0E-05 ATCCGTGTGGTCATCT 16 V_IRF2_Q6_M01882 TRANSFAC - 67970761 67970776 2.0E-06 GCGAAAGCGAAAGCAG 16 V_GTF2IRD1_01_M01229 TRANSFAC + 67970669 67970677 7.0E-06 GGGATTAGG 9 V_PU1_Q4_M01172 TRANSFAC + 67970749 67970767 4.0E-06 CGTCTGTACTTCCTGCTTT 19 V_BARBIE_01_M00238 TRANSFAC - 67970757 67970771 1.0E-05 AGCGAAAGCAGGAAG 15 V_ZNF219_01_M01122 TRANSFAC + 67970514 67970525 1.0E-05 CTCCCCCACCCC 12 V_IRF2_01_M00063 TRANSFAC - 67970763 67970775 1.0E-05 CGAAAGCGAAAGC 13 V_KROX_Q6_M00982 TRANSFAC + 67969853 67969866 5.0E-06 CCTGCCCCCGCACC 14 V_KROX_Q6_M00982 TRANSFAC + 67970512 67970525 8.0E-06 CCCTCCCCCACCCC 14 V_KROX_Q6_M00982 TRANSFAC + 67970581 67970594 1.0E-05 CGCGCCCCCGCTTC 14 V_ZBP89_Q4_M01816 TRANSFAC + 67970512 67970521 4.0E-06 CCCTCCCCCA 10 V_IRF3_Q3_M01279 TRANSFAC + 67970761 67970773 3.0E-06 CTGCTTTCGCTTT 13 V_NFE4_Q5_M02105 TRANSFAC - 67970218 67970229 5.0E-06 CTCCCTCTCCTC 12 V_AHR_01_M00139 TRANSFAC + 67970327 67970344 2.0E-06 TCCCGGTCTTGCGTGCGT 18 V_PITX3_01_M01343 TRANSFAC + 67970666 67970681 5.0E-06 GAGGGGATTAGGGGTC 16 V_DAX1_01_M01248 TRANSFAC + 67969432 67969451 9.0E-06 TGAGGCCAAGGTCACAGGGG 20 V_KLF7_03_M02773 TRANSFAC - 67969609 67969624 9.0E-06 CCGACCCCGCCCATCC 16 V_MYCN_01_M02259 TRANSFAC + 67969583 67969592 8.0E-06 CCCACGTGGC 10 V_CTCF_02_M01259 TRANSFAC - 67962556 67962575 1.0E-06 ATGCAGACACCAGATGGCGC 20 V_CTCF_01_M01200 TRANSFAC - 67962554 67962573 4.0E-06 GCAGACACCAGATGGCGCCT 20 V_ICSBP_Q6_M00699 TRANSFAC - 67970762 67970773 8.0E-06 AAAGCGAAAGCA 12 V_PAX8_B_M00328 TRANSFAC - 67968379 67968396 1.0E-06 TCATTCTTGAGTGGAATG 18 V_IRF7_01_M00453 TRANSFAC - 67970760 67970777 6.0E-06 GGCGAAAGCGAAAGCAGG 18 V_SF1_Q6_01_M01132 TRANSFAC - 67969437 67969445 7.0E-06 TGACCTTGG 9 V_TFIII_Q6_M00706 TRANSFAC + 67970222 67970230 6.0E-06 AGAGGGAGG 9 V_BCL6B_04_M02844 TRANSFAC + 67969676 67969691 7.0E-06 ATCCCCGCCCCTTCCT 16 V_PLAG1_01_M01778 TRANSFAC + 67970009 67970024 7.0E-06 GAGGCAAAAGGGAGGA 16 V_ERR2_01_M01589 TRANSFAC + 67969437 67969448 3.0E-06 CCAAGGTCACAG 12 V_NRF2_01_M00108 TRANSFAC - 67969754 67969763 1.0E-06 ACCGGAAGAG 10 V_ASCL2_04_M02841 TRANSFAC + 67969674 67969689 1.0E-06 CTATCCCCGCCCCTTC 16 V_ZFP281_01_M01597 TRANSFAC - 67970517 67970527 1.0E-06 TGGGGGTGGGG 11 V_TITF1_Q3_M00432 TRANSFAC + 67968385 67968394 8.0E-06 ACTCAAGAAT 10 V_ZFP281_04_M02831 TRANSFAC + 67970509 67970523 1.0E-06 ACACCCTCCCCCACC 15 V_SP1_Q2_01_M00933 TRANSFAC + 67969678 67969687 7.0E-06 CCCCGCCCCT 10 V_HNF4_01_M00134 TRANSFAC + 67969445 67969463 9.0E-06 ACAGGGGCAGAGTTCGAGG 19 V_SP1_Q4_01_M00932 TRANSFAC - 67969676 67969688 6.0E-06 AAGGGGCGGGGAT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.