Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

XKR3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 150165 XK, Kell blood group complex subunit-related family, member 3 chr22 - 17302084 - 17307584 17302584 Transcription Factor Binding Sites   Download all TFBS in the XKR3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 17300301 17300316 6.0E-06 ATTCATAAAAAATGTA 16 POU4F2_POU_full_monomeric_16_1 SELEX - 17300302 17300317 6.0E-06 CTACATTTTTTATGAA 16 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 17306324 17306332 9.0E-06 GTCATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 17306323 17306332 2.0E-06 GTCATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 17306323 17306332 5.0E-06 GTCATAAAAA 10 SOX10_HMG_full_dimeric_14_1 SELEX + 17305770 17305783 4.0E-06 TGAAAGTGAAGTCA 14 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 17306322 17306333 1.0E-06 AGTCATAAAAAG 12 IRF7_IRF_DBD_dimeric_14_1 SELEX + 17305763 17305776 0.0E+00 TAGAAAGTGAAAGT 14 IRF8_IRF_full_dimeric_14_1 SELEX + 17305763 17305776 2.0E-06 TAGAAAGTGAAAGT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX - 17306306 17306318 9.0E-06 AGAAAATAAGCAA 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 17300348 17300356 6.0E-06 TATTCAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 17300348 17300356 6.0E-06 TATTCAAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX - 17300345 17300358 3.0E-06 CATATTCAAATCAG 14 SOX9_HMG_DBD_monomeric_9_1 SELEX + 17305786 17305794 9.0E-06 GAACAATGG 9 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 17306323 17306332 2.0E-06 GTCATAAAAA 10 SOX8_HMG_DBD_dimeric_14_1 SELEX + 17305770 17305783 1.0E-06 TGAAAGTGAAGTCA 14 HOXC11_homeodomain_full_monomeric_11_1 SELEX - 17306323 17306333 4.0E-06 AGTCATAAAAA 11 POU2F2_POU_DBD_monomeric_11_1 SELEX - 17300347 17300357 7.0E-06 ATATTCAAATC 11 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 17300348 17300356 4.0E-06 TATTCAAAT 9 POU4F3_POU_DBD_monomeric_16_1 SELEX + 17300301 17300316 3.0E-06 ATTCATAAAAAATGTA 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 17300302 17300317 2.0E-06 CTACATTTTTTATGAA 16 IRF1_MA0050.1 JASPAR + 17305765 17305776 1.0E-06 GAAAGTGAAAGT 12 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 17306323 17306332 0.0E+00 GTCATAAAAA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 17306324 17306333 2.0E-06 AGTCATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 17306324 17306332 9.0E-06 GTCATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 17306323 17306332 9.0E-06 GTCATAAAAA 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 17306323 17306333 0.0E+00 AGTCATAAAAA 11 SOX14_HMG_DBD_dimeric_13_1 SELEX - 17305788 17305800 2.0E-06 TAAATTCCATTGT 13 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 17300354 17300366 0.0E+00 ATATGATGCAATA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 17300353 17300366 0.0E+00 AATATGATGCAATA 14 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 17306323 17306333 1.0E-06 AGTCATAAAAA 11 POU3F1_POU_DBD_monomeric_12_1 SELEX - 17300346 17300357 8.0E-06 ATATTCAAATCA 12 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 17300243 17300255 8.0E-06 TAAAGACTTATTA 13 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 17306303 17306315 9.0E-06 AAATTGCTTATTT 13 IRF9_IRF_full_trimeric_15_1 SELEX + 17305762 17305776 7.0E-06 GTAGAAAGTGAAAGT 15 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX - 17306322 17306333 7.0E-06 AGTCATAAAAAG 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 17305764 17305778 0.0E+00 AGAAAGTGAAAGTGA 15 POU2F1_POU_DBD_monomeric_12_1 SELEX - 17300347 17300358 9.0E-06 CATATTCAAATC 12 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX - 17306247 17306255 2.0E-06 TGCTGTTAA 9 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 17306323 17306332 1.0E-06 GTCATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 17306324 17306332 7.0E-06 GTCATAAAA 9 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX - 17306323 17306333 1.0E-06 AGTCATAAAAA 11 MAFK_bZIP_full_monomeric_12_1 SELEX + 17306302 17306313 7.0E-06 AAAATTGCTTAT 12 SOX9_MA0077.1 JASPAR + 17305786 17305794 5.0E-06 GAACAATGG 9 POU3F2_POU_DBD_monomeric_12_1 SELEX - 17300346 17300357 8.0E-06 ATATTCAAATCA 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 17300301 17300311 1.0E-05 ATTCATAAAAA 11 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 17306323 17306333 1.0E-06 AGTCATAAAAA 11 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX - 17306323 17306333 4.0E-06 AGTCATAAAAA 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 17306307 17306319 2.0E-06 AAGAAAATAAGCA 13 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 17306324 17306332 6.0E-06 GTCATAAAA 9 NFE2L2_MA0150.1 JASPAR - 17306371 17306381 7.0E-06 ATGACTCAGCT 11 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 17306324 17306332 6.0E-06 GTCATAAAA 9 POU4F1_POU_DBD_monomeric_14_1 SELEX + 17300301 17300314 3.0E-06 ATTCATAAAAAATG 14 POU4F1_POU_DBD_monomeric_14_1 SELEX - 17300304 17300317 3.0E-06 CTACATTTTTTATG 14 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 17306323 17306333 1.0E-06 AGTCATAAAAA 11 IRF2_MA0051.1 JASPAR + 17305764 17305781 2.0E-06 AGAAAGTGAAAGTGAAGT 18 IRF2_MA0051.1 JASPAR - 17306259 17306276 6.0E-06 TGAAAACGAGACCAGAAA 18 V_HOXA9_01_M01351 TRANSFAC + 17300299 17300315 6.0E-06 AGATTCATAAAAAATGT 17 V_FOXP1_01_M00987 TRANSFAC - 17300374 17300393 0.0E+00 TGATTTGTGTTTGCCAGCTT 20 V_CDX2_Q5_01_M01659 TRANSFAC + 17300302 17300312 1.0E-06 TTCATAAAAAA 11 V_MAFK_03_M02776 TRANSFAC + 17306301 17306315 0.0E+00 TAAAATTGCTTATTT 15 V_SOX30_03_M02804 TRANSFAC + 17305783 17305798 0.0E+00 ACTGAACAATGGAATT 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 17300236 17300247 6.0E-06 AATGTTTTAAAG 12 V_IRF_Q6_01_M00972 TRANSFAC + 17305765 17305775 0.0E+00 GAAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 17305763 17305778 0.0E+00 TAGAAAGTGAAAGTGA 16 V_NFAT3_Q3_M01734 TRANSFAC - 17300398 17300407 4.0E-06 TATTTTTCCT 10 V_POU2F3_01_M01476 TRANSFAC - 17300344 17300359 4.0E-06 TCATATTCAAATCAGT 16 V_CEBP_Q2_M00190 TRANSFAC - 17300354 17300367 1.0E-06 ATATTGCATCATAT 14 V_CEBPB_01_M00109 TRANSFAC + 17300354 17300367 0.0E+00 ATATGATGCAATAT 14 V_CEBPB_01_M00109 TRANSFAC + 17305724 17305737 8.0E-06 GAGTTTAGAAATGG 14 V_RHOX11_02_M01384 TRANSFAC - 17306243 17306259 7.0E-06 ATGGTGCTGTTAAAGAG 17 V_E2_Q6_M00181 TRANSFAC - 17306253 17306268 8.0E-06 AGACCAGAAATGGTGC 16 V_AP1_Q6_M00174 TRANSFAC - 17306372 17306382 4.0E-06 GATGACTCAGC 11 V_SOX7_03_M02807 TRANSFAC + 17305780 17305801 5.0E-06 GTCACTGAACAATGGAATTTAG 22 V_HOXB13_01_M01467 TRANSFAC + 17300299 17300314 9.0E-06 AGATTCATAAAAAATG 16 V_FOXO1_02_M00474 TRANSFAC - 17300263 17300276 9.0E-06 GTCATGATTACTTT 14 V_SOX8_04_M02912 TRANSFAC + 17300299 17300312 3.0E-06 AGATTCATAAAAAA 14 V_NFAT_Q6_M00302 TRANSFAC + 17300395 17300406 7.0E-06 TGGAGGAAAAAT 12 V_AP1_Q6_01_M00925 TRANSFAC - 17306373 17306381 7.0E-06 ATGACTCAG 9 V_HOXB9_01_M01426 TRANSFAC + 17300299 17300314 2.0E-06 AGATTCATAAAAAATG 16 V_IRF3_Q3_M01279 TRANSFAC - 17305766 17305778 1.0E-06 TCACTTTCACTTT 13 V_IRF_Q6_M00772 TRANSFAC - 17305765 17305779 0.0E+00 TTCACTTTCACTTTC 15 V_CDX2_Q5_M00729 TRANSFAC + 17300244 17300257 6.0E-06 AAAGACTTATTACA 14 V_HOXC11_01_M01329 TRANSFAC - 17306321 17306336 1.0E-06 TTTAGTCATAAAAAGG 16 V_HOXD11_01_M01434 TRANSFAC - 17306320 17306336 5.0E-06 TTTAGTCATAAAAAGGC 17 V_ISRE_01_M00258 TRANSFAC - 17305763 17305777 8.0E-06 CACTTTCACTTTCTA 15 V_HOXC12_01_M01437 TRANSFAC - 17306320 17306336 3.0E-06 TTTAGTCATAAAAAGGC 17 V_BBX_04_M02843 TRANSFAC - 17300406 17300422 7.0E-06 AATTTGTTAAAAGGTTA 17 V_AP1_C_M00199 TRANSFAC - 17306373 17306381 6.0E-06 ATGACTCAG 9 V_MAFK_Q3_M02022 TRANSFAC - 17306370 17306380 5.0E-06 TGACTCAGCTA 11 V_HOXA11_01_M01378 TRANSFAC - 17306321 17306336 1.0E-06 TTTAGTCATAAAAAGG 16 V_SOX9_B1_M00410 TRANSFAC + 17305783 17305796 1.0E-06 ACTGAACAATGGAA 14 V_BLIMP1_Q6_M01066 TRANSFAC + 17305763 17305778 0.0E+00 TAGAAAGTGAAAGTGA 16 V_ICSBP_Q6_M00699 TRANSFAC + 17305766 17305777 0.0E+00 AAAGTGAAAGTG 12 V_MAF_Q6_01_M00983 TRANSFAC + 17306371 17306381 1.0E-06 AGCTGAGTCAT 11 V_HOXD9_Q2_M01834 TRANSFAC - 17306324 17306333 4.0E-06 AGTCATAAAA 10 V_IRF7_01_M00453 TRANSFAC + 17305762 17305779 7.0E-06 GTAGAAAGTGAAAGTGAA 18 V_HBP1_04_M02866 TRANSFAC - 17305783 17305799 8.0E-06 AAATTCCATTGTTCAGT 17 V_AP1_Q4_01_M00926 TRANSFAC + 17306374 17306381 1.0E-05 TGAGTCAT 8 V_SOX15_03_M02799 TRANSFAC + 17305782 17305798 6.0E-06 CACTGAACAATGGAATT 17 V_MTF1_06_M02882 TRANSFAC - 17306490 17306503 9.0E-06 GAATCAGAAAAATA 14 V_TAL1_01_M01591 TRANSFAC - 17300314 17300326 3.0E-06 CTTCCTTTTCTAC 13 V_CEBPA_01_M00116 TRANSFAC - 17300354 17300367 6.0E-06 ATATTGCATCATAT 14 V_OCT2_01_M01368 TRANSFAC - 17300344 17300359 5.0E-06 TCATATTCAAATCAGT 16 V_DELTAEF1_01_M00073 TRANSFAC - 17306481 17306491 2.0E-06 TATCACCTTAA 11 V_RHOX11_05_M03099 TRANSFAC - 17306243 17306259 7.0E-06 ATGGTGCTGTTAAAGAG 17 V_DMRT7_01_M01151 TRANSFAC - 17300307 17300320 7.0E-06 TTTCTACATTTTTT 14 V_FRA1_Q5_M01267 TRANSFAC + 17306374 17306381 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC + 17306370 17306382 5.0E-06 TAGCTGAGTCATC 13 V_E2_Q6_01_M00928 TRANSFAC + 17306252 17306267 9.0E-06 AGCACCATTTCTGGTC 16 V_PLZF_02_M01075 TRANSFAC + 17306289 17306317 2.0E-06 TTGCTTTGCAGGTAAAATTGCTTATTTTC 29 V_CEBPB_Q6_M01896 TRANSFAC + 17300357 17300366 5.0E-06 TGATGCAATA 10 V_SOX21_04_M02907 TRANSFAC - 17305781 17305797 5.0E-06 ATTCCATTGTTCAGTGA 17 V_IRF1_Q6_01_M01881 TRANSFAC - 17305764 17305777 0.0E+00 CACTTTCACTTTCT 14 V_SOX8_03_M02808 TRANSFAC - 17305782 17305798 1.0E-05 AATTCCATTGTTCAGTG 17 V_SATB1_01_M01232 TRANSFAC - 17306326 17306337 1.0E-05 CTTTAGTCATAA 12 V_NFE2_01_M00037 TRANSFAC + 17306371 17306381 1.0E-06 AGCTGAGTCAT 11 V_HOXC10_01_M01361 TRANSFAC - 17306321 17306336 0.0E+00 TTTAGTCATAAAAAGG 16 V_SRY_05_M02917 TRANSFAC + 17305781 17305797 3.0E-06 TCACTGAACAATGGAAT 17 V_NFE2L2_01_M02263 TRANSFAC - 17306371 17306381 7.0E-06 ATGACTCAGCT 11 V_DMRT1_01_M01146 TRANSFAC - 17300231 17300245 8.0E-06 TTAAAACATTGTTGA 15 V_GLIS2_04_M02863 TRANSFAC + 17306325 17306338 6.0E-06 TTTATGACTAAAGT 14 V_RORA2_01_M00157 TRANSFAC - 17306470 17306482 1.0E-05 AAATGTAGGACAA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.