Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 149373 uncharacterized LOC149373 chr1 - 231322873 - 231328373 231323373 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Tp53_p53l_DBD_dimeric_18_1 SELEX + 231320059 231320076 1.0E-05 ACATTTCATTGGTCAGGT 18 SPIC_ETS_full_monomeric_14_1 SELEX + 231320086 231320099 6.0E-06 AGAATGAGGACGTC 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 231323249 231323260 6.0E-06 AAAAAAAACAAT 12 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 231320043 231320059 8.0E-06 AAGTTGACCACGGGTCA 17 TEAD1_TEA_full_monomeric_10_1 SELEX - 231319838 231319847 7.0E-06 AACATTCCTT 10 EOMES_TBX_DBD_monomeric_13_1 SELEX + 231323339 231323351 9.0E-06 ATGGTGTGAAACT 13 CUX1_CUT_DBD_dimeric_18_1 SELEX - 231323363 231323380 1.0E-05 ATTAAAACAGGAATCGAA 18 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 231323245 231323258 4.0E-06 AAAAAAAAAAAACA 14 znf143_MA0088.1 JASPAR - 231319718 231319737 0.0E+00 TTTGTTCCATAGTTCCTTGA 20 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 231320043 231320059 9.0E-06 AAGTTGACCACGGGTCA 17 Gata1_MA0035.2 JASPAR + 231323277 231323287 5.0E-06 GCAGATAAAAA 11 Foxd3_MA0041.1 JASPAR - 231323250 231323261 0.0E+00 TATTGTTTTTTT 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX + 231323471 231323482 1.0E-05 AGCCACGTGGCT 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX - 231323471 231323482 1.0E-05 AGCCACGTGGCT 12 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 231319838 231319847 4.0E-06 AACATTCCTT 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 231323246 231323258 4.0E-06 AAAAAAAAAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 231323246 231323258 1.0E-06 AAAAAAAAAAACA 13 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 231323250 231323263 4.0E-06 AAAAAAACAATACC 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 231323245 231323258 5.0E-06 AAAAAAAAAAAACA 14 V_HNF3B_01_M00131 TRANSFAC - 231323249 231323263 1.0E-06 GGTATTGTTTTTTTT 15 V_USF_Q6_M00187 TRANSFAC + 231323472 231323481 9.0E-06 GCCACGTGGC 10 V_USF_Q6_M00187 TRANSFAC - 231323472 231323481 9.0E-06 GCCACGTGGC 10 V_GEN_INI_B_M00315 TRANSFAC - 231319574 231319581 1.0E-05 CCTCATTT 8 V_TCF3_01_M01594 TRANSFAC - 231319907 231319919 7.0E-06 CCTTTGTTTTATA 13 V_APOLYA_B_M00310 TRANSFAC - 231319852 231319866 3.0E-06 AATAAAGACTCTTTT 15 V_GATA1_Q6_M02004 TRANSFAC + 231323274 231323288 9.0E-06 GGGGCAGATAAAAAG 15 V_SOX40_04_M02908 TRANSFAC + 231319972 231319987 7.0E-06 TTAGATTCTAATCCCA 16 V_MAX_Q6_M01830 TRANSFAC - 231323473 231323484 2.0E-06 CCAGCCACGTGG 12 V_HMGIY_Q3_M01010 TRANSFAC - 231323246 231323260 6.0E-06 ATTGTTTTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 231323247 231323261 7.0E-06 TATTGTTTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 231323241 231323255 4.0E-06 GGTTAAAAAAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC - 231323250 231323261 0.0E+00 TATTGTTTTTTT 12 V_MAFB_05_M02775 TRANSFAC + 231320027 231320043 5.0E-06 TGATTTGCTGATGTTAA 17 V_MMEF2_Q6_M00405 TRANSFAC + 231323239 231323254 5.0E-06 CAGGTTAAAAAAAAAA 16 V_SOX5_01_M00042 TRANSFAC + 231323253 231323262 9.0E-06 AAAACAATAC 10 V_RELBP52_01_M01239 TRANSFAC - 231323294 231323303 8.0E-06 GGGGATTTCT 10 V_FOXJ2_02_M00423 TRANSFAC + 231323253 231323266 6.0E-06 AAAACAATACCTTA 14 V_EOMES_03_M02747 TRANSFAC + 231323336 231323352 3.0E-06 ATGATGGTGTGAAACTC 17 V_TBR2_01_M01774 TRANSFAC + 231319668 231319676 1.0E-05 AAGTGTGAA 9 V_NFAT3_Q3_M01734 TRANSFAC - 231319570 231319579 3.0E-06 TCATTTTCCT 10 V_HOXD1_01_M01448 TRANSFAC + 231324095 231324111 6.0E-06 AATCCTAATGAGCTGGA 17 V_HNF3_Q6_01_M01012 TRANSFAC - 231323246 231323263 4.0E-06 GGTATTGTTTTTTTTTTT 18 V_PITX2_Q6_M02114 TRANSFAC + 231319978 231319987 5.0E-06 TCTAATCCCA 10 V_NFY_Q6_01_M00775 TRANSFAC - 231320064 231320076 4.0E-06 ACCTGACCAATGA 13 V_TCFAP2E_04_M02926 TRANSFAC + 231323240 231323253 4.0E-06 AGGTTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 231323243 231323256 1.0E-06 TTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 231323244 231323257 4.0E-06 TAAAAAAAAAAAAC 14 V_CEBPB_01_M00109 TRANSFAC - 231323310 231323323 1.0E-06 AGGTTGTGAAATGG 14 V_BARBIE_01_M00238 TRANSFAC + 231323281 231323295 1.0E-06 ATAAAAAGGTGAGAG 15 V_RPC155_01_M01798 TRANSFAC - 231319629 231319644 3.0E-06 GCCTGGGTTTGAATCC 16 V_EVX2_01_M01386 TRANSFAC - 231324095 231324111 4.0E-06 TCCAGCTCATTAGGATT 17 V_ELF4_04_M02850 TRANSFAC + 231323241 231323257 0.0E+00 GGTTAAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC + 231323242 231323258 0.0E+00 GTTAAAAAAAAAAAACA 17 V_ELF4_04_M02850 TRANSFAC + 231323243 231323259 1.0E-06 TTAAAAAAAAAAAACAA 17 V_ELF4_04_M02850 TRANSFAC + 231323244 231323260 8.0E-06 TAAAAAAAAAAAACAAT 17 V_SOX13_03_M02797 TRANSFAC + 231323250 231323265 8.0E-06 AAAAAAACAATACCTT 16 V_SOX7_03_M02807 TRANSFAC + 231323248 231323269 1.0E-06 AAAAAAAAACAATACCTTAGCA 22 V_GEN_INI3_B_M00314 TRANSFAC - 231319574 231319581 1.0E-05 CCTCATTT 8 V_HNF3G_Q4_M02015 TRANSFAC - 231319732 231319739 7.0E-06 TGTTTGTT 8 V_ZFP105_03_M02827 TRANSFAC + 231323242 231323256 1.0E-06 GTTAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 231323243 231323257 5.0E-06 TTAAAAAAAAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC + 231323244 231323258 1.0E-06 TAAAAAAAAAAAACA 15 V_ZFP105_03_M02827 TRANSFAC + 231323245 231323259 1.0E-06 AAAAAAAAAAAACAA 15 V_ZFP105_03_M02827 TRANSFAC + 231323248 231323262 1.0E-06 AAAAAAAAACAATAC 15 V_MYCMAX_01_M00118 TRANSFAC + 231323470 231323483 9.0E-06 AAGCCACGTGGCTG 14 V_MYCMAX_01_M00118 TRANSFAC - 231323470 231323483 9.0E-06 CAGCCACGTGGCTT 14 V_FOXO1_02_M00474 TRANSFAC - 231323249 231323262 9.0E-06 GTATTGTTTTTTTT 14 V_AMEF2_Q6_M00403 TRANSFAC + 231323239 231323256 9.0E-06 CAGGTTAAAAAAAAAAAA 18 V_HNF3_Q6_M00791 TRANSFAC + 231323248 231323260 4.0E-06 AAAAAAAAACAAT 13 V_SOX_Q6_M01014 TRANSFAC + 231319763 231319775 2.0E-06 CTCTTTGTTCAGT 13 V_JUNDM2_04_M02876 TRANSFAC - 231319592 231319607 9.0E-06 TTAGGTGAGTCACTTA 16 V_SOX12_04_M02900 TRANSFAC - 231319753 231319768 3.0E-06 AAAGAGACAAAGAGAC 16 V_SOX12_04_M02900 TRANSFAC + 231328353 231328368 2.0E-06 TCACACACAAAGGACT 16 V_GATA1_09_M02254 TRANSFAC + 231323277 231323287 5.0E-06 GCAGATAAAAA 11 V_STAF_02_M00264 TRANSFAC - 231319716 231319736 1.0E-06 TTGTTCCATAGTTCCTTGAGC 21 V_TBP_06_M02814 TRANSFAC - 231319842 231319857 1.0E-05 TCTTTTTAAAAACATT 16 V_SOX11_03_M02795 TRANSFAC - 231319760 231319776 6.0E-06 AACTGAACAAAGAGACA 17 V_SOX11_03_M02795 TRANSFAC + 231319907 231319923 6.0E-06 TATAAAACAAAGGCACG 17 V_ZFP691_04_M02937 TRANSFAC + 231319592 231319608 9.0E-06 TAAGTGACTCACCTAAT 17 V_GATA4_Q3_M00632 TRANSFAC + 231319701 231319712 7.0E-06 TGATAGCAGGGA 12 V_OTX2_Q3_M01719 TRANSFAC - 231319977 231319989 1.0E-05 ACTGGGATTAGAA 13 V_ELF1_Q6_M00746 TRANSFAC + 231319565 231319576 7.0E-06 ATTTGAGGAAAA 12 V_GATA1_05_M00346 TRANSFAC + 231323277 231323286 6.0E-06 GCAGATAAAA 10 V_MTF1_06_M02882 TRANSFAC + 231323244 231323257 6.0E-06 TAAAAAAAAAAAAC 14 V_MTF1_06_M02882 TRANSFAC + 231323245 231323258 4.0E-06 AAAAAAAAAAAACA 14 V_POU6F1_02_M01462 TRANSFAC + 231324095 231324111 2.0E-06 AATCCTAATGAGCTGGA 17 V_FAC1_01_M00456 TRANSFAC + 231323245 231323258 6.0E-06 AAAAAAAAAAAACA 14 V_FAC1_01_M00456 TRANSFAC + 231323247 231323260 9.0E-06 AAAAAAAAAACAAT 14 V_FOXL1_02_M02857 TRANSFAC + 231319905 231319920 1.0E-05 AGTATAAAACAAAGGC 16 V_FOXL1_02_M02857 TRANSFAC + 231323248 231323263 5.0E-06 AAAAAAAAACAATACC 16 V_FOXL1_04_M02753 TRANSFAC + 231323247 231323263 6.0E-06 AAAAAAAAAACAATACC 17 V_GEN_INI2_B_M00313 TRANSFAC - 231319574 231319581 1.0E-05 CCTCATTT 8 V_TCF7_04_M02921 TRANSFAC - 231319843 231319857 3.0E-06 TCTTTTTAAAAACAT 15 V_DMRT7_01_M01151 TRANSFAC - 231323246 231323259 1.0E-05 TTGTTTTTTTTTTT 14 V_BDP1_01_M01796 TRANSFAC + 231319629 231319640 4.0E-06 GGATTCAAACCC 12 V_PITX2_Q2_M00482 TRANSFAC + 231319978 231319988 4.0E-06 TCTAATCCCAG 11 V_SMAD_Q6_01_M00974 TRANSFAC + 231324142 231324152 4.0E-06 TTGGCAGACAG 11 V_SOX8_03_M02808 TRANSFAC - 231323250 231323266 1.0E-06 TAAGGTATTGTTTTTTT 17 V_SRF_06_M02916 TRANSFAC + 231323240 231323256 3.0E-06 AGGTTAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 231323241 231323257 0.0E+00 GGTTAAAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC + 231323242 231323258 0.0E+00 GTTAAAAAAAAAAAACA 17 V_SRF_06_M02916 TRANSFAC + 231323243 231323259 0.0E+00 TTAAAAAAAAAAAACAA 17 V_SRF_06_M02916 TRANSFAC + 231323244 231323260 0.0E+00 TAAAAAAAAAAAACAAT 17 V_SRF_06_M02916 TRANSFAC + 231323245 231323261 0.0E+00 AAAAAAAAAAAACAATA 17 V_SRF_06_M02916 TRANSFAC + 231323246 231323262 1.0E-06 AAAAAAAAAAACAATAC 17 V_POU6F1_03_M01479 TRANSFAC + 231324095 231324111 2.0E-06 AATCCTAATGAGCTGGA 17 V_SOX4_01_M01308 TRANSFAC + 231319912 231319919 1.0E-05 AACAAAGG 8 V_HOXB3_01_M01330 TRANSFAC + 231324095 231324111 3.0E-06 AATCCTAATGAGCTGGA 17 V_FOXO1_01_M00473 TRANSFAC + 231323251 231323260 3.0E-06 AAAAAACAAT 10 V_SOX12_03_M02796 TRANSFAC - 231323249 231323262 8.0E-06 GTATTGTTTTTTTT 14 V_SRY_05_M02917 TRANSFAC + 231323249 231323265 4.0E-06 AAAAAAAACAATACCTT 17 V_FOXO4_01_M00472 TRANSFAC + 231323252 231323262 1.0E-05 AAAAACAATAC 11 V_CMAF_01_M01070 TRANSFAC + 231320027 231320045 5.0E-06 TGATTTGCTGATGTTAAAG 19 V_BRF1_01_M01747 TRANSFAC - 231319628 231319640 1.0E-06 GGGTTTGAATCCC 13 V_TCF3_05_M02920 TRANSFAC + 231323240 231323254 4.0E-06 AGGTTAAAAAAAAAA 15 V_GLIS2_04_M02863 TRANSFAC + 231319842 231319855 9.0E-06 AATGTTTTTAAAAA 14 V_SMAD1_01_M01590 TRANSFAC + 231319909 231319920 4.0E-06 TAAAACAAAGGC 12 V_SOX9_Q4_M01284 TRANSFAC + 231319911 231319921 1.0E-06 AAACAAAGGCA 11 V_SOX9_Q4_M01284 TRANSFAC + 231328357 231328367 7.0E-06 ACACAAAGGAC 11 V_RFX1_02_M00281 TRANSFAC - 231324033 231324050 6.0E-06 ATGTTGATAAAGCAACGT 18 V_NANOG_02_M01247 TRANSFAC - 231319759 231319778 7.0E-06 AAAACTGAACAAAGAGACAA 20 V_NANOG_02_M01247 TRANSFAC + 231319905 231319924 3.0E-06 AGTATAAAACAAAGGCACGT 20 V_NANOG_02_M01247 TRANSFAC + 231323242 231323261 4.0E-06 GTTAAAAAAAAAAAACAATA 20 V_NANOG_02_M01247 TRANSFAC + 231323243 231323262 4.0E-06 TTAAAAAAAAAAAACAATAC 20 V_ER_Q6_M00191 TRANSFAC - 231320052 231320070 8.0E-06 CCAATGAAATGTGACCCGT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.