Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SHISA4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 149345 shisa homolog 4 (Xenopus laevis) chr1 + 201852804 - 201858304 201857804 Transcription Factor Binding Sites   Download all TFBS in the SHISA4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 201857433 201857441 3.0E-06 CCACTTGAA 9 SP8_C2H2_DBD_monomeric_12_1 SELEX - 201853163 201853174 5.0E-06 ACCACTCCCCCT 12 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 201853023 201853042 7.0E-06 GTGACCTTGAGTAAGTTCTT 20 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 201853023 201853042 5.0E-06 AAGAACTTACTCAAGGTCAC 20 SOX10_HMG_full_dimeric_16_1 SELEX - 201855078 201855093 2.0E-06 TAAAATGTTCAGTGCT 16 SOX10_HMG_full_dimeric_14_1 SELEX - 201852917 201852930 1.0E-06 TGAATTTGCAATCA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX + 201852919 201852932 3.0E-06 ATTGCAAATTCATA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 201852919 201852932 4.0E-06 TATGAATTTGCAAT 14 SPIC_ETS_full_monomeric_14_1 SELEX + 201853141 201853154 3.0E-06 CAAAAGAGGAAGCC 14 SOX9_HMG_full_dimeric_16_1 SELEX - 201855078 201855093 8.0E-06 TAAAATGTTCAGTGCT 16 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 201853459 201853470 3.0E-06 ACTAATAATAGG 12 SOX8_HMG_DBD_dimeric_16_1 SELEX - 201855078 201855093 1.0E-06 TAAAATGTTCAGTGCT 16 EWSR1-FLI1_MA0149.1 JASPAR - 201853707 201853724 6.0E-06 GAGGGCAAGGGAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 201854774 201854791 8.0E-06 GAAAGTAAGGAAGGCCTC 18 Esrrb_MA0141.1 JASPAR - 201853024 201853035 2.0E-06 TACTCAAGGTCA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 201853459 201853470 5.0E-06 ACTAATAATAGG 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 201853694 201853705 8.0E-06 GCTATAAACAGA 12 SOX8_HMG_DBD_dimeric_14_1 SELEX - 201852917 201852930 1.0E-06 TGAATTTGCAATCA 14 IRF7_IRF_DBD_trimeric_17_1 SELEX - 201854637 201854653 8.0E-06 TAAGGGAAACTCCATTC 17 SPIB_ETS_DBD_monomeric_14_1 SELEX + 201853141 201853154 4.0E-06 CAAAAGAGGAAGCC 14 POU4F3_POU_DBD_monomeric_16_1 SELEX + 201852926 201852941 1.0E-05 ATTCATAACTAATATC 16 MEF2B_MADS_full_dimeric_12_1 SELEX - 201853459 201853470 2.0E-06 ACTAATAATAGG 12 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 201853024 201853040 6.0E-06 GAACTTACTCAAGGTCA 17 MEF2A_MA0052.1 JASPAR + 201853460 201853469 3.0E-06 CTATTATTAG 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 201852919 201852932 3.0E-06 ATTGCAAATTCATA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 201852919 201852932 2.0E-06 TATGAATTTGCAAT 14 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 201853791 201853806 5.0E-06 TGCCATTTAAAGATAA 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 201853791 201853806 3.0E-06 TTATCTTTAAATGGCA 16 SP1_MA0079.2 JASPAR + 201854953 201854962 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR - 201857557 201857566 7.0E-06 CCCCGCCCCC 10 POU2F3_POU_DBD_dimeric_12_1 SELEX - 201852920 201852931 2.0E-06 ATGAATTTGCAA 12 SP4_C2H2_full_monomeric_17_1 SELEX - 201857554 201857570 6.0E-06 GTCACCCCGCCCCCATT 17 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 201854590 201854606 1.0E-06 TGCTCTCCAGGAATGCA 17 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 201853023 201853032 3.0E-06 TCAAGGTCAC 10 SOX9_HMG_full_dimeric_16_3 SELEX - 201852916 201852931 1.0E-06 ATGAATTTGCAATCAC 16 Lhx3_MA0135.1 JASPAR - 201854421 201854433 5.0E-06 ACATTAATTCTCC 13 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 201854257 201854268 3.0E-06 AAAGATTAAAGC 12 SP1_C2H2_DBD_monomeric_11_1 SELEX - 201853164 201853174 8.0E-06 ACCACTCCCCC 11 SP1_C2H2_DBD_monomeric_11_1 SELEX - 201857557 201857567 4.0E-06 ACCCCGCCCCC 11 Mycn_MA0104.2 JASPAR - 201856495 201856504 3.0E-06 ACCACGTGGC 10 TBX20_TBX_full_dimeric_16_1 SELEX - 201853728 201853743 1.0E-06 AAGTGTTATTTTGGGA 16 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 201857432 201857441 8.0E-06 TCCACTTGAA 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 201853023 201853033 5.0E-06 CTCAAGGTCAC 11 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 201857541 201857557 3.0E-06 CATTCCCAGAACACAAG 17 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 201852920 201852931 8.0E-06 TTGCAAATTCAT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 201852920 201852931 2.0E-06 ATGAATTTGCAA 12 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 201853022 201853032 1.0E-06 TCAAGGTCACA 11 SPI1_ETS_full_monomeric_14_1 SELEX + 201853141 201853154 3.0E-06 CAAAAGAGGAAGCC 14 RUNX1_MA0002.2 JASPAR - 201855441 201855451 9.0E-06 TTTTGTGGCTT 11 NFE2L2_MA0150.1 JASPAR + 201854879 201854889 1.0E-06 GTGACTCAGCA 11 POU4F1_POU_DBD_monomeric_14_1 SELEX + 201852926 201852939 5.0E-06 ATTCATAACTAATA 14 RORA_2_MA0072.1 JASPAR + 201854920 201854933 6.0E-06 CCAAACTGGGTCAC 14 V_FOXP1_01_M00987 TRANSFAC + 201855091 201855110 2.0E-06 TTAGACTTGTTTTTTTGTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 201854289 201854301 4.0E-06 CTGATTTAAGAGA 13 V_AP2ALPHA_Q6_M01857 TRANSFAC - 201857747 201857757 6.0E-06 CGCCCCCGGCC 11 V_STAT5A_Q6_M01890 TRANSFAC + 201853525 201853537 5.0E-06 GCCTTTCTGAGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 201853529 201853541 5.0E-06 GGGTTTCTCAGAA 13 V_TCFE2A_04_M02927 TRANSFAC - 201853813 201853829 9.0E-06 TGGGGCAGATGGTGAGG 17 V_BACH2_01_M00490 TRANSFAC - 201852955 201852965 7.0E-06 GATGAGTCAGC 11 V_SOX14_05_M02902 TRANSFAC + 201853062 201853076 9.0E-06 GAGACACAATGGATC 15 V_RHOX11_01_M01347 TRANSFAC - 201854242 201854258 8.0E-06 TTCTTGCTGTAAATGAA 17 V_ZFX_01_M01593 TRANSFAC + 201857742 201857757 7.0E-06 GCCCAGGCCGGGGGCG 16 V_HMGIY_Q3_M01010 TRANSFAC + 201852919 201852933 7.0E-06 ATTGCAAATTCATAA 15 V_ERR3_Q2_01_M02094 TRANSFAC - 201853022 201853034 1.0E-06 ACTCAAGGTCACA 13 V_LRH1_Q5_01_M02098 TRANSFAC - 201853024 201853034 9.0E-06 ACTCAAGGTCA 11 V_FOXJ2_02_M00423 TRANSFAC + 201853732 201853745 2.0E-06 AAAATAACACTTGT 14 V_RORA_Q4_M01138 TRANSFAC + 201854922 201854932 3.0E-06 AAACTGGGTCA 11 V_SP1_Q6_01_M00931 TRANSFAC + 201857558 201857567 7.0E-06 GGGGCGGGGT 10 V_MEF2_02_M00231 TRANSFAC - 201853455 201853476 6.0E-06 GATCAGACTAATAATAGGTAAC 22 V_HNF4_Q6_M00967 TRANSFAC + 201855449 201855457 2.0E-06 AAAGTCCAA 9 V_SP1_03_M02281 TRANSFAC + 201854953 201854962 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC - 201857557 201857566 7.0E-06 CCCCGCCCCC 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 201854641 201854652 7.0E-06 GGAGTTTCCCTT 12 V_CMYB_Q5_M01821 TRANSFAC + 201853760 201853770 5.0E-06 CCCAACTGGCA 11 V_SP1_02_M01303 TRANSFAC + 201857558 201857568 3.0E-06 GGGGCGGGGTG 11 V_PU1_Q4_M01172 TRANSFAC - 201853142 201853160 1.0E-06 GGTCTTGGCTTCCTCTTTT 19 V_PU1_Q4_M01172 TRANSFAC + 201855502 201855520 4.0E-06 AACTTCAGTTTCCTCATCT 19 V_CMYC_02_M01154 TRANSFAC - 201856494 201856505 1.0E-06 GACCACGTGGCT 12 V_BCL6_02_M01185 TRANSFAC - 201854593 201854606 5.0E-06 TGCTCTCCAGGAAT 14 V_AP1_Q6_M00174 TRANSFAC + 201852955 201852965 1.0E-05 GCTGACTCATC 11 V_AP1_Q6_M00174 TRANSFAC + 201854878 201854888 1.0E-05 GGTGACTCAGC 11 V_MYCMAX_01_M00118 TRANSFAC + 201856493 201856506 4.0E-06 CAGCCACGTGGTCC 14 V_MYCMAX_01_M00118 TRANSFAC - 201856493 201856506 4.0E-06 GGACCACGTGGCTG 14 V_RUNX1_01_M02257 TRANSFAC - 201855441 201855451 9.0E-06 TTTTGTGGCTT 11 V_CMYC_01_M01145 TRANSFAC + 201856494 201856505 3.0E-06 AGCCACGTGGTC 12 V_SOX8_04_M02912 TRANSFAC + 201852924 201852937 9.0E-06 AAATTCATAACTAA 14 V_IRF2_01_M00063 TRANSFAC - 201854643 201854655 5.0E-06 GATAAGGGAAACT 13 V_KROX_Q6_M00982 TRANSFAC - 201857552 201857565 4.0E-06 CCCGCCCCCATTCC 14 V_RSRFC4_Q2_M00407 TRANSFAC - 201853456 201853472 1.0E-06 AGACTAATAATAGGTAA 17 V_HOXA3_07_M02869 TRANSFAC + 201854254 201854267 5.0E-06 AAGAAAGATTAAAG 14 V_SP1_Q6_M00196 TRANSFAC + 201857556 201857568 3.0E-06 TGGGGGCGGGGTG 13 V_FOXK1_04_M02856 TRANSFAC + 201853729 201853743 1.0E-05 CCCAAAATAACACTT 15 MYC_MAX_MA0059.1 JASPAR + 201856494 201856504 5.0E-06 AGCCACGTGGT 11 MYC_MAX_MA0059.1 JASPAR - 201856495 201856505 4.0E-06 GACCACGTGGC 11 V_MAZ_Q6_01_M02023 TRANSFAC - 201857584 201857597 4.0E-06 GGGGGCGGAGAGGG 14 V_MEF2_03_M00232 TRANSFAC - 201853455 201853476 5.0E-06 GATCAGACTAATAATAGGTAAC 22 V_HOX13_01_M00023 TRANSFAC + 201853449 201853478 5.0E-06 GTTAATGTTACCTATTATTAGTCTGATCCC 30 V_REST_01_M01256 TRANSFAC + 201854375 201854396 3.0E-06 TCCTGGTGCTGTCCTAGGCCTT 22 V_AP1_C_M00199 TRANSFAC - 201852956 201852964 3.0E-06 ATGAGTCAG 9 V_OCAB_Q6_M02113 TRANSFAC + 201855456 201855466 4.0E-06 AACTGCAAATC 11 V_KLF7_03_M02773 TRANSFAC - 201857555 201857570 7.0E-06 GTCACCCCGCCCCCAT 16 V_MAFK_Q3_M02022 TRANSFAC + 201854880 201854890 4.0E-06 TGACTCAGCAG 11 V_STAT4_Q5_M02117 TRANSFAC - 201853528 201853537 9.0E-06 TTCTCAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC + 201853529 201853538 5.0E-06 TTCTGAGAAA 10 V_MYCN_01_M02259 TRANSFAC - 201856495 201856504 3.0E-06 ACCACGTGGC 10 V_AP1_01_M00517 TRANSFAC - 201852954 201852966 1.0E-06 GGATGAGTCAGCG 13 V_SP1_01_M00008 TRANSFAC + 201857558 201857567 3.0E-06 GGGGCGGGGT 10 V_HNF4A_02_M02868 TRANSFAC + 201855445 201855460 7.0E-06 CACAAAAGTCCAACTG 16 V_MAF_Q6_01_M00983 TRANSFAC - 201854879 201854889 7.0E-06 TGCTGAGTCAC 11 V_IRF7_01_M00453 TRANSFAC - 201855499 201855516 5.0E-06 GAGGAAACTGAAGTTGGA 18 V_SF1_Q6_01_M01132 TRANSFAC + 201853024 201853032 3.0E-06 TGACCTTGA 9 V_OTX2_Q3_M01719 TRANSFAC + 201854255 201854267 1.0E-05 AGAAAGATTAAAG 13 V_ELF1_Q6_M00746 TRANSFAC + 201853142 201853153 5.0E-06 AAAAGAGGAAGC 12 V_HBP1_04_M02866 TRANSFAC - 201855518 201855534 0.0E+00 TCATCCCATTGTACAGA 17 V_TAL1_01_M01591 TRANSFAC + 201855510 201855522 4.0E-06 TTTCCTCATCTGT 13 V_IPF1_05_M01255 TRANSFAC - 201854424 201854435 8.0E-06 ACACATTAATTC 12 V_FOXL1_02_M02857 TRANSFAC + 201853727 201853742 9.0E-06 ATCCCAAAATAACACT 16 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 201853814 201853829 8.0E-06 TGGGGCAGATGGTGAG 16 V_HDX_01_M01333 TRANSFAC - 201852912 201852928 4.0E-06 AATTTGCAATCACAAAA 17 V_ERR1_Q2_M00511 TRANSFAC - 201853022 201853035 1.0E-06 TACTCAAGGTCACA 14 V_ERR2_01_M01589 TRANSFAC - 201853021 201853032 0.0E+00 TCAAGGTCACAC 12 V_ZFP161_04_M02933 TRANSFAC - 201857937 201857950 9.0E-06 TCCGCGCAGCGCCC 14 V_FPM315_01_M01587 TRANSFAC + 201857856 201857867 4.0E-06 GGGGGAGCAGGG 12 V_NRF2_Q4_M00821 TRANSFAC - 201854878 201854890 1.0E-06 CTGCTGAGTCACC 13 V_STAT1STAT1_Q3_M01212 TRANSFAC - 201853527 201853539 4.0E-06 GTTTCTCAGAAAG 13 V_RSRFC4_01_M00026 TRANSFAC + 201853457 201853472 2.0E-06 TACCTATTATTAGTCT 16 V_ESRRA_03_M02748 TRANSFAC - 201853019 201853035 0.0E+00 TACTCAAGGTCACACAA 17 V_ZFP281_01_M01597 TRANSFAC + 201857556 201857566 6.0E-06 TGGGGGCGGGG 11 V_MYF6_03_M02781 TRANSFAC + 201853733 201853748 6.0E-06 AAATAACACTTGTCTA 16 V_EWSR1FLI1_01_M02252 TRANSFAC - 201853707 201853724 6.0E-06 GAGGGCAAGGGAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 201854774 201854791 8.0E-06 GAAAGTAAGGAAGGCCTC 18 V_VDR_Q3_M00444 TRANSFAC + 201853677 201853691 5.0E-06 GGTTCAGAAAGGAGA 15 V_NFE2_Q6_M02104 TRANSFAC + 201854878 201854893 9.0E-06 GGTGACTCAGCAGAGC 16 V_SOX18_04_M02905 TRANSFAC + 201852919 201852934 8.0E-06 ATTGCAAATTCATAAC 16 V_SATB1_01_M01232 TRANSFAC - 201852928 201852939 1.0E-06 TATTAGTTATGA 12 V_NFE2_01_M00037 TRANSFAC + 201852954 201852964 4.0E-06 CGCTGACTCAT 11 V_NFE2_01_M00037 TRANSFAC - 201854879 201854889 0.0E+00 TGCTGAGTCAC 11 V_SP1_Q2_01_M00933 TRANSFAC - 201857557 201857566 4.0E-06 CCCCGCCCCC 10 V_ARP1_01_M00155 TRANSFAC - 201857401 201857416 8.0E-06 CCAGCCCATGGCCTCA 16 V_MEF2A_05_M01301 TRANSFAC + 201853458 201853469 4.0E-06 ACCTATTATTAG 12 V_NFE2L2_01_M02263 TRANSFAC + 201854879 201854889 1.0E-06 GTGACTCAGCA 11 V_HMEF2_Q6_M00406 TRANSFAC + 201853795 201853810 1.0E-05 ATTTAAAGATAACCTG 16 V_GATA1_02_M00126 TRANSFAC - 201854647 201854660 5.0E-06 TCCAAGATAAGGGA 14 V_GATA1_02_M00126 TRANSFAC + 201855019 201855032 8.0E-06 CTAGAGATAAGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 201857556 201857568 9.0E-06 TGGGGGCGGGGTG 13 V_TCF11MAFG_01_M00284 TRANSFAC + 201854874 201854895 7.0E-06 GTGAGGTGACTCAGCAGAGCAC 22 V_RHOX11_06_M03100 TRANSFAC - 201854242 201854258 8.0E-06 TTCTTGCTGTAAATGAA 17 V_RORA2_01_M00157 TRANSFAC + 201854921 201854933 5.0E-06 CAAACTGGGTCAC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.