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RC3H1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 149041 ring finger and CCCH-type domains 1 chr1 - 173961710 - 173967210 173962210 Transcription Factor Binding Sites   Download all TFBS in the RC3H1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 173966943 173966962 1.0E-06 ATGACCCTATTTCAGGACTT 20 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 173966943 173966962 3.0E-06 AAGTCCTGAAATAGGGTCAT 20 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 173966423 173966440 4.0E-06 GTAATCATGAATTACTTA 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 173966997 173967014 4.0E-06 ACAATTAACTGACACTTT 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 173966997 173967013 6.0E-06 CAATTAACTGACACTTT 17 POU3F3_POU_DBD_monomeric_12_1 SELEX + 173966429 173966440 9.0E-06 ATGAATTACTTA 12 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 173967158 173967171 9.0E-06 TGATTTACTAAATA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 173967186 173967202 4.0E-06 TCAGTCAAAAGTAAACA 17 SOX8_HMG_DBD_dimeric_16_1 SELEX + 173967170 173967185 6.0E-06 TACAATAAGCATTCTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX + 173967170 173967185 0.0E+00 TACAATAAGCATTCTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 173967170 173967185 8.0E-06 AAGAATGCTTATTGTA 16 ZNF232_C2H2_full_monomeric_19_1 SELEX + 173967004 173967022 9.0E-06 CAGTTAATTGTAGATCATA 19 BARX1_homeodomain_DBD_monomeric_8_1 SELEX - 173967007 173967014 5.0E-06 ACAATTAA 8 IRF7_IRF_DBD_trimeric_17_1 SELEX - 173967028 173967044 2.0E-06 AAATGGAAATTCTTCTT 17 SPIB_ETS_DBD_monomeric_14_1 SELEX - 173967040 173967053 8.0E-06 AGAATGAGGAAATG 14 POU4F3_POU_DBD_monomeric_16_1 SELEX + 173966429 173966444 1.0E-05 ATGAATTACTTATATA 16 RUNX3_RUNX_full_monomeric_10_1 SELEX + 173967143 173967152 1.0E-06 AAACCACAAA 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 173967143 173967151 8.0E-06 AAACCACAA 9 MGA_TBX_DBD_dimeric_18_2 SELEX + 173964830 173964847 7.0E-06 TGTGATATTATTCTCACC 18 MGA_TBX_DBD_dimeric_18_2 SELEX - 173964830 173964847 6.0E-06 GGTGAGAATAATATCACA 18 SOX7_HMG_full_dimeric_16_1 SELEX - 173967170 173967185 9.0E-06 AAGAATGCTTATTGTA 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 173966423 173966440 1.0E-05 GTAATCATGAATTACTTA 18 POU1F1_POU_DBD_monomeric_17_1 SELEX + 173966426 173966442 4.0E-06 ATCATGAATTACTTATA 17 TBX2_TBX_full_dimeric_18_1 SELEX + 173964830 173964847 4.0E-06 TGTGATATTATTCTCACC 18 TBX2_TBX_full_dimeric_18_1 SELEX - 173964830 173964847 2.0E-06 GGTGAGAATAATATCACA 18 Hltf_MA0109.1 JASPAR + 173966434 173966443 4.0E-06 TTACTTATAT 10 SOX21_HMG_DBD_dimeric_16_1 SELEX + 173967170 173967185 3.0E-06 TACAATAAGCATTCTT 16 SOX21_HMG_DBD_dimeric_16_1 SELEX - 173967170 173967185 5.0E-06 AAGAATGCTTATTGTA 16 RUNX1_MA0002.2 JASPAR - 173967143 173967153 1.0E-06 TTTTGTGGTTT 11 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 173966997 173967014 1.0E-05 ACAATTAACTGACACTTT 18 POU4F1_POU_DBD_monomeric_14_1 SELEX + 173966429 173966442 6.0E-06 ATGAATTACTTATA 14 V_RUSH1A_02_M01107 TRANSFAC + 173966434 173966443 4.0E-06 TTACTTATAT 10 V_HOXA9_01_M01351 TRANSFAC - 173966378 173966394 8.0E-06 ACTGCCATTAAGTTTTT 17 V_FOXP1_01_M00987 TRANSFAC - 173966362 173966381 0.0E+00 TTTTTTGTCTTGTTTTGTTT 20 V_FOXP1_01_M00987 TRANSFAC - 173966367 173966386 2.0E-06 TAAGTTTTTTTGTCTTGTTT 20 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 173966992 173967005 9.0E-06 TGACACTTTGAGTC 14 V_ZFP187_03_M02830 TRANSFAC + 173966442 173966455 9.0E-06 ATAAGTACAAATAA 14 V_OSF2_Q6_M00731 TRANSFAC + 173967145 173967152 1.0E-05 ACCACAAA 8 V_ALX4_01_M00619 TRANSFAC - 173964835 173964847 8.0E-06 GGTGAGAATAATA 13 V_DMRT3_01_M01148 TRANSFAC - 173967132 173967146 7.0E-06 GTTTAGATACATGTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 173967029 173967043 2.0E-06 AATGGAAATTCTTCT 15 V_EVI1_04_M00081 TRANSFAC + 173966367 173966381 5.0E-06 AAACAAGACAAAAAA 15 V_BCL6_01_M01183 TRANSFAC - 173966361 173966376 7.0E-06 TGTCTTGTTTTGTTTT 16 V_BCL6_01_M01183 TRANSFAC - 173966366 173966381 5.0E-06 TTTTTTGTCTTGTTTT 16 V_BCL6_01_M01183 TRANSFAC - 173966978 173966993 4.0E-06 TCTCAAAAAAATCTTT 16 V_AML3_Q6_M01856 TRANSFAC + 173967126 173967133 1.0E-05 AACCACAA 8 V_AML3_Q6_M01856 TRANSFAC + 173967144 173967151 1.0E-05 AACCACAA 8 V_GATA3_03_M00351 TRANSFAC + 173967020 173967029 5.0E-06 ATAGATCTAA 10 V_STAT_Q6_M00777 TRANSFAC - 173967025 173967037 7.0E-06 AATTCTTCTTAGA 13 V_SATB1_Q3_M01723 TRANSFAC + 173966380 173966395 3.0E-06 AAACTTAATGGCAGTT 16 V_SRY_02_M00160 TRANSFAC + 173966360 173966371 3.0E-06 TAAAACAAAACA 12 V_HNF3_Q6_01_M01012 TRANSFAC + 173964808 173964825 8.0E-06 TTTATTGTTTTCAATGTT 18 V_PU1_Q4_M01172 TRANSFAC + 173967034 173967052 0.0E+00 AATTTCCATTTCCTCATTC 19 V_NFAT2_01_M01748 TRANSFAC - 173967034 173967042 5.0E-06 ATGGAAATT 9 V_ELF4_04_M02850 TRANSFAC - 173966978 173966994 2.0E-06 GTCTCAAAAAAATCTTT 17 V_SOX7_03_M02807 TRANSFAC - 173964802 173964823 1.0E-06 CATTGAAAACAATAAAGTGAGT 22 V_SOX7_03_M02807 TRANSFAC + 173966366 173966387 6.0E-06 AAAACAAGACAAAAAAACTTAA 22 V_SOX7_03_M02807 TRANSFAC + 173967163 173967184 6.0E-06 TACTAAATACAATAAGCATTCT 22 V_RUNX1_01_M02257 TRANSFAC - 173967143 173967153 1.0E-06 TTTTGTGGTTT 11 V_TEF_Q6_M00672 TRANSFAC + 173966434 173966445 4.0E-06 TTACTTATATAA 12 V_AML2_01_M01759 TRANSFAC + 173967126 173967133 1.0E-05 AACCACAA 8 V_AML2_01_M01759 TRANSFAC + 173967144 173967151 1.0E-05 AACCACAA 8 V_CEBPD_Q6_M00621 TRANSFAC + 173967040 173967051 6.0E-06 CATTTCCTCATT 12 V_FOXK1_04_M02856 TRANSFAC + 173967124 173967138 6.0E-06 TCAACCACAACATGT 15 V_EVI1_01_M00078 TRANSFAC + 173966362 173966377 8.0E-06 AAACAAAACAAGACAA 16 V_OCT1_05_M00161 TRANSFAC + 173967032 173967045 1.0E-06 AGAATTTCCATTTC 14 V_PAX2_01_M00098 TRANSFAC + 173966422 173966440 8.0E-06 TGTAATCATGAATTACTTA 19 V_OCT1_04_M00138 TRANSFAC + 173966438 173966460 1.0E-06 TTATATAAGTACAAATAAATTGA 23 V_OCT1_04_M00138 TRANSFAC - 173967028 173967050 7.0E-06 ATGAGGAAATGGAAATTCTTCTT 23 V_OCT1_08_M01354 TRANSFAC + 173966421 173966436 8.0E-06 ATGTAATCATGAATTA 16 V_GR_01_M00955 TRANSFAC + 173964807 173964833 8.0E-06 CTTTATTGTTTTCAATGTTCTCCTGTG 27 V_SOX12_04_M02900 TRANSFAC + 173966368 173966383 8.0E-06 AACAAGACAAAAAAAC 16 V_PEBP_Q6_M00984 TRANSFAC + 173967141 173967155 9.0E-06 CTAAACCACAAAAGA 15 V_HFH1_01_M00129 TRANSFAC + 173967107 173967118 5.0E-06 GACAGTTTATAT 12 V_NKX3A_01_M00451 TRANSFAC - 173966432 173966443 1.0E-06 ATATAAGTAATT 12 V_NKX3A_01_M00451 TRANSFAC + 173966440 173966451 2.0E-06 ATATAAGTACAA 12 V_IRX3_01_M01318 TRANSFAC - 173967127 173967143 3.0E-06 TAGATACATGTTGTGGT 17 V_IRX5_01_M01472 TRANSFAC - 173967127 173967143 3.0E-06 TAGATACATGTTGTGGT 17 V_IRF7_01_M00453 TRANSFAC - 173967031 173967048 2.0E-06 GAGGAAATGGAAATTCTT 18 V_ELF1_Q6_M00746 TRANSFAC - 173967041 173967052 3.0E-06 GAATGAGGAAAT 12 V_IRX3_02_M01485 TRANSFAC - 173967127 173967143 8.0E-06 TAGATACATGTTGTGGT 17 V_FAC1_01_M00456 TRANSFAC + 173967126 173967139 0.0E+00 AACCACAACATGTA 14 V_FOXL1_02_M02857 TRANSFAC + 173966356 173966371 1.0E-06 TGTCTAAAACAAAACA 16 V_FOXL1_02_M02857 TRANSFAC + 173966361 173966376 0.0E+00 AAAACAAAACAAGACA 16 V_FOXJ3_06_M02855 TRANSFAC + 173966360 173966376 8.0E-06 TAAAACAAAACAAGACA 17 V_MYB_Q5_01_M00913 TRANSFAC - 173967001 173967009 4.0E-06 TAACTGACA 9 V_MYB_Q3_M00773 TRANSFAC + 173966999 173967009 0.0E+00 AGTGTCAGTTA 11 V_IRX2_01_M01405 TRANSFAC - 173967127 173967143 2.0E-06 TAGATACATGTTGTGGT 17 V_OCT1_07_M00248 TRANSFAC - 173967034 173967045 6.0E-06 GAAATGGAAATT 12 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 173967143 173967150 1.0E-05 TGTGGTTT 8 V_FOXO1_04_M01969 TRANSFAC + 173967123 173967142 2.0E-06 TTCAACCACAACATGTATCT 20 V_PIT1_Q6_M00802 TRANSFAC - 173966418 173966435 0.0E+00 AATTCATGATTACATACT 18 V_IRXB3_01_M01377 TRANSFAC - 173967127 173967143 4.0E-06 TAGATACATGTTGTGGT 17 V_ATATA_B_M00311 TRANSFAC - 173966436 173966445 4.0E-06 TTATATAAGT 10 V_ATATA_B_M00311 TRANSFAC + 173966438 173966447 4.0E-06 TTATATAAGT 10 V_FOXK1_03_M02752 TRANSFAC - 173964808 173964824 9.0E-06 ACATTGAAAACAATAAA 17 V_SMAD1_01_M01590 TRANSFAC + 173966370 173966381 7.0E-06 CAAGACAAAAAA 12 V_PAX6_01_M00097 TRANSFAC - 173967184 173967204 4.0E-06 TATGTTTACTTTTGACTGAAA 21 V_SOX14_03_M02798 TRANSFAC + 173967164 173967179 6.0E-06 ACTAAATACAATAAGC 16 V_SOX14_03_M02798 TRANSFAC - 173967164 173967179 1.0E-05 GCTTATTGTATTTAGT 16 V_NANOG_02_M01247 TRANSFAC + 173966356 173966375 8.0E-06 TGTCTAAAACAAAACAAGAC 20 V_NANOG_02_M01247 TRANSFAC + 173966361 173966380 8.0E-06 AAAACAAAACAAGACAAAAA 20 V_NANOG_02_M01247 TRANSFAC + 173966366 173966385 1.0E-06 AAAACAAGACAAAAAAACTT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.