Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KNCN Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 148930 kinocilin chr1 - 47016387 - 47021887 47016887 Transcription Factor Binding Sites   Download all TFBS in the KNCN promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 47013880 47013895 2.0E-06 GCGAATAATAGATGAA 16 LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 47013828 47013840 9.0E-06 ATGAAACTAATGA 13 Egr1_MA0162.1 JASPAR - 47020717 47020727 1.0E-06 TGCGTGGGCGG 11 IRF7_IRF_DBD_dimeric_14_1 SELEX + 47013822 47013835 5.0E-06 TGTAAAATGAAACT 14 RFX4_RFX_DBD_dimeric_16_1 SELEX + 47015430 47015445 0.0E+00 TGTAGTCATGGCAACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 47015430 47015445 0.0E+00 CGTTGCCATGACTACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 47020357 47020372 3.0E-06 TGCTACCATGGCAACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 47020357 47020372 4.0E-06 TGTTGCCATGGTAGCA 16 EGR1_C2H2_full_monomeric_14_1 SELEX + 47020716 47020729 1.0E-06 CCCGCCCACGCATG 14 POU2F2_POU_DBD_monomeric_11_1 SELEX + 47013819 47013829 7.0E-06 TTATGTAAAAT 11 POU4F3_POU_DBD_monomeric_16_1 SELEX + 47013880 47013895 7.0E-06 GCGAATAATAGATGAA 16 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 47020715 47020730 9.0E-06 CCCCGCCCACGCATGA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 47015430 47015445 0.0E+00 TGTAGTCATGGCAACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 47015430 47015445 0.0E+00 CGTTGCCATGACTACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 47020357 47020372 2.0E-06 TGCTACCATGGCAACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 47020357 47020372 5.0E-06 TGTTGCCATGGTAGCA 16 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 47019415 47019428 9.0E-06 GAGTTAAAAAATTA 14 EGR2_C2H2_full_monomeric_15_1 SELEX + 47020715 47020729 1.0E-06 CCCCGCCCACGCATG 15 SP4_C2H2_full_monomeric_17_1 SELEX + 47020711 47020727 2.0E-06 TAGGCCCCGCCCACGCA 17 Egr3_C2H2_DBD_monomeric_15_1 SELEX + 47020716 47020730 1.0E-06 CCCGCCCACGCATGA 15 SP1_C2H2_DBD_monomeric_11_1 SELEX + 47020714 47020724 1.0E-05 GCCCCGCCCAC 11 EGR4_C2H2_DBD_monomeric_16_2 SELEX + 47020715 47020730 2.0E-06 CCCCGCCCACGCATGA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 47015430 47015445 0.0E+00 TGTAGTCATGGCAACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 47015430 47015445 0.0E+00 CGTTGCCATGACTACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 47020357 47020372 2.0E-06 TGCTACCATGGCAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 47020357 47020372 2.0E-06 TGTTGCCATGGTAGCA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 47015430 47015445 2.0E-06 TGTAGTCATGGCAACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 47015430 47015445 2.0E-06 CGTTGCCATGACTACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 47020357 47020372 1.0E-06 TGCTACCATGGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 47020357 47020372 3.0E-06 TGTTGCCATGGTAGCA 16 IRF9_IRF_full_trimeric_15_1 SELEX + 47013821 47013835 1.0E-05 ATGTAAAATGAAACT 15 POU2F1_POU_DBD_monomeric_12_1 SELEX + 47013818 47013829 8.0E-06 CTTATGTAAAAT 12 EGR2_C2H2_DBD_monomeric_11_1 SELEX + 47020717 47020727 1.0E-06 CCGCCCACGCA 11 RREB1_MA0073.1 JASPAR + 47015449 47015468 5.0E-06 GCACAACACACACACACACA 20 IRF2_MA0051.1 JASPAR + 47013823 47013840 4.0E-06 GTAAAATGAAACTAATGA 18 V_MEQ_01_M02049 TRANSFAC + 47015453 47015461 7.0E-06 AACACACAC 9 V_TST1_02_M01316 TRANSFAC - 47019415 47019431 5.0E-06 GACTAATTTTTTAACTC 17 V_FOXJ1_04_M02854 TRANSFAC - 47013857 47013871 8.0E-06 GTCTCACAACAACCA 15 V_IRF2_Q6_M01882 TRANSFAC + 47013822 47013837 1.0E-06 TGTAAAATGAAACTAA 16 V_RFX4_03_M02789 TRANSFAC + 47020360 47020374 5.0E-06 TACCATGGCAACAAG 15 V_EGR1_02_M01972 TRANSFAC - 47020717 47020727 1.0E-06 TGCGTGGGCGG 11 V_PAX6_02_M01391 TRANSFAC - 47019417 47019432 0.0E+00 TGACTAATTTTTTAAC 16 V_DBP_Q6_01_M01872 TRANSFAC + 47013819 47013826 5.0E-06 TTATGTAA 8 V_EGR1_01_M00243 TRANSFAC - 47020717 47020728 0.0E+00 ATGCGTGGGCGG 12 V_NGFIC_01_M00244 TRANSFAC - 47020717 47020728 0.0E+00 ATGCGTGGGCGG 12 Hand1_Tcfe2a_MA0092.1 JASPAR + 47013911 47013920 7.0E-06 TGTCTGGAAT 10 V_SP1_Q6_M00196 TRANSFAC - 47020713 47020725 8.0E-06 CGTGGGCGGGGCC 13 V_EGR1_Q6_M01873 TRANSFAC - 47020717 47020726 7.0E-06 GCGTGGGCGG 10 V_ISRE_01_M00258 TRANSFAC - 47013822 47013836 9.0E-06 TAGTTTCATTTTACA 15 V_PIT1_01_M01465 TRANSFAC - 47019415 47019431 8.0E-06 GACTAATTTTTTAACTC 17 V_ISGF3G_03_M02771 TRANSFAC + 47013823 47013837 0.0E+00 GTAAAATGAAACTAA 15 V_CTCF_02_M01259 TRANSFAC - 47013846 47013865 7.0E-06 CAACAACCACATGAGGGCAG 20 V_EGR2_01_M00246 TRANSFAC - 47020717 47020728 1.0E-06 ATGCGTGGGCGG 12 V_CTCF_01_M01200 TRANSFAC - 47013844 47013863 5.0E-06 ACAACCACATGAGGGCAGCA 20 V_ICSBP_Q6_M00699 TRANSFAC + 47013825 47013836 0.0E+00 AAAATGAAACTA 12 V_SP4_Q5_M01273 TRANSFAC + 47020714 47020724 9.0E-06 GCCCCGCCCAC 11 V_IRF5_03_M02769 TRANSFAC + 47013823 47013837 8.0E-06 GTAAAATGAAACTAA 15 V_BRN4_01_M01473 TRANSFAC - 47019415 47019431 7.0E-06 GACTAATTTTTTAACTC 17 V_IRF6_03_M02770 TRANSFAC + 47013824 47013840 7.0E-06 TAAAATGAAACTAATGA 17 V_EGR1_06_M02744 TRANSFAC + 47020716 47020729 1.0E-06 CCCGCCCACGCATG 14 V_IRF1_Q6_01_M01881 TRANSFAC - 47013823 47013836 3.0E-06 TAGTTTCATTTTAC 14 V_IPF1_Q4_01_M01013 TRANSFAC - 47013830 47013844 3.0E-06 ACTATCATTAGTTTC 15 V_SP1_Q4_01_M00932 TRANSFAC - 47020713 47020725 4.0E-06 CGTGGGCGGGGCC 13 V_MIF1_01_M00279 TRANSFAC + 47020342 47020359 8.0E-06 GGCTTCCAAGGCAACTGC 18 V_RFX1_02_M00281 TRANSFAC + 47015429 47015446 8.0E-06 CTGTAGTCATGGCAACGC 18 V_RFX1_02_M00281 TRANSFAC + 47020356 47020373 1.0E-06 CTGCTACCATGGCAACAA 18 V_DMRT5_01_M01150 TRANSFAC - 47013824 47013838 7.0E-06 ATTAGTTTCATTTTA 15 V_EGR3_01_M00245 TRANSFAC - 47020717 47020728 1.0E-06 ATGCGTGGGCGG 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.