Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCDC27 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 148870 coiled-coil domain containing 27 chr1 + 3663964 - 3669464 3668964 Transcription Factor Binding Sites   Download all TFBS in the CCDC27 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 3664205 3664218 8.0E-06 TAATAAGAAAATAA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 3664204 3664215 4.0E-06 TAAGAAAATAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 3667595 3667607 7.0E-06 TTTACACAAACAT 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 3664205 3664215 6.0E-06 TAAGAAAATAA 11 IRF1_MA0050.1 JASPAR - 3664201 3664212 3.0E-06 GAAAATAAAACC 12 POU6F2_POU_DBD_dimeric_16_1 SELEX + 3664204 3664219 2.0E-06 TTTATTTTCTTATTAA 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 3664204 3664219 5.0E-06 TTAATAAGAAAATAAA 16 FOXI1_MA0042.1 JASPAR + 3667593 3667604 1.0E-05 AGATGTTTGTGT 12 NR3C1_MA0113.1 JASPAR - 3667468 3667485 2.0E-06 CAAGACATTCTGTTCCGA 18 TP53_MA0106.1 JASPAR + 3666198 3666217 7.0E-06 AGGGATATGTTCTGAGAAGT 20 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 3664202 3664214 4.0E-06 AAGAAAATAAAAC 13 V_HNF3B_01_M00131 TRANSFAC + 3664201 3664215 4.0E-06 GGTTTTATTTTCTTA 15 V_HNF3B_01_M00131 TRANSFAC + 3667591 3667605 4.0E-06 TGAGATGTTTGTGTA 15 V_GEN_INI_B_M00315 TRANSFAC - 3673137 3673144 1.0E-05 CCTCATTT 8 V_HOXA13_02_M01297 TRANSFAC - 3664202 3664210 1.0E-06 AAATAAAAC 9 V_SP1_Q6_01_M00931 TRANSFAC + 3664031 3664040 7.0E-06 GGGGCGGGGT 10 V_EGR_Q6_M00807 TRANSFAC + 3664048 3664058 7.0E-06 GTGGGGGCGGA 11 V_CEBP_Q2_M00190 TRANSFAC - 3666221 3666234 6.0E-06 AAATTGCCTAATGA 14 V_HNF3_Q6_01_M01012 TRANSFAC + 3664201 3664218 8.0E-06 GGTTTTATTTTCTTATTA 18 V_SP1_02_M01303 TRANSFAC + 3664031 3664041 8.0E-06 GGGGCGGGGTC 11 V_PU1_Q4_M01172 TRANSFAC - 3665170 3665188 4.0E-06 TACTCCTGGTTCCTCTTTG 19 V_NR3C1_01_M02219 TRANSFAC - 3667468 3667485 2.0E-06 CAAGACATTCTGTTCCGA 18 V_STAT4_Q4_M01666 TRANSFAC + 3666207 3666220 6.0E-06 TTCTGAGAAGTGCA 14 V_NFY_C_M00209 TRANSFAC + 3664186 3664199 1.0E-06 CCTGATTGGCAAGA 14 V_GC_01_M00255 TRANSFAC + 3664049 3664062 1.0E-06 TGGGGGCGGAGCCT 14 V_GEN_INI3_B_M00314 TRANSFAC - 3673137 3673144 1.0E-05 CCTCATTT 8 V_CEBPE_Q6_M01868 TRANSFAC - 3666223 3666236 2.0E-06 TGAAATTGCCTAAT 14 V_POLY_C_M00212 TRANSFAC - 3664193 3664210 7.0E-06 AAATAAAACCCTCTTGCC 18 V_KROX_Q6_M00982 TRANSFAC - 3664045 3664058 3.0E-06 TCCGCCCCCACGCC 14 V_CEBPD_Q6_M00621 TRANSFAC + 3666230 3666241 9.0E-06 AATTTCACCATC 12 V_SP1_Q6_M00196 TRANSFAC + 3664029 3664041 8.0E-06 GCGGGGCGGGGTC 13 V_SP1_Q6_M00196 TRANSFAC + 3664049 3664061 6.0E-06 TGGGGGCGGAGCC 13 V_HNF3_Q6_M00791 TRANSFAC - 3664204 3664216 9.0E-06 ATAAGAAAATAAA 13 V_HNF1_Q6_01_M01011 TRANSFAC - 3664204 3664224 9.0E-06 TTTTCTTAATAAGAAAATAAA 21 V_SP1_01_M00008 TRANSFAC + 3664031 3664040 3.0E-06 GGGGCGGGGT 10 V_MTF1_06_M02882 TRANSFAC - 3664205 3664218 1.0E-06 TAATAAGAAAATAA 14 V_CEBPA_01_M00116 TRANSFAC - 3666221 3666234 4.0E-06 AAATTGCCTAATGA 14 V_FOXL1_02_M02857 TRANSFAC - 3664201 3664216 9.0E-06 ATAAGAAAATAAAACC 16 V_GEN_INI2_B_M00313 TRANSFAC - 3673137 3673144 1.0E-05 CCTCATTT 8 V_ASCL2_04_M02841 TRANSFAC - 3665234 3665249 4.0E-06 CTAACCCCTCCCTGTG 16 V_HFH3_01_M00289 TRANSFAC + 3667593 3667605 4.0E-06 AGATGTTTGTGTA 13 V_FOXJ2_01_M00422 TRANSFAC - 3667591 3667608 4.0E-06 CTTTACACAAACATCTCA 18 V_UF1H3BETA_Q6_M01068 TRANSFAC + 3663973 3663986 4.0E-06 GGCAGGGGTGGGGC 14 V_GLIS2_04_M02863 TRANSFAC + 3664212 3664225 9.0E-06 CTTATTAAGAAAAT 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.