Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MFSD4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 148808 major facilitator superfamily domain containing 4 chr1 + 205533111 - 205538611 205538111 Transcription Factor Binding Sites   Download all TFBS in the MFSD4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 205538381 205538399 7.0E-06 TGCCCAGCAGGAGGCAGAG 19 SOX10_HMG_full_dimeric_14_1 SELEX + 205533226 205533239 4.0E-06 TGTATTTGCATTCA 14 SOX8_HMG_DBD_dimeric_14_1 SELEX + 205533226 205533239 7.0E-06 TGTATTTGCATTCA 14 POU3F4_POU_DBD_monomeric_9_1 SELEX - 205533229 205533237 7.0E-06 AATGCAAAT 9 ETV2_ETS_DBD_monomeric_11_1 SELEX + 205533177 205533187 8.0E-06 AACCGGATATT 11 SOX9_HMG_full_dimeric_16_3 SELEX + 205533225 205533240 6.0E-06 CTGTATTTGCATTCAT 16 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 205535121 205535129 9.0E-06 CACATAAAA 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 205540471 205540479 7.0E-06 ATGACTCAC 9 SPDEF_ETS_full_monomeric_11_1 SELEX + 205533177 205533187 4.0E-06 AACCGGATATT 11 NFIA_NFI_full_monomeric_10_1 SELEX - 205533118 205533127 9.0E-06 AGTGCCAAGA 10 V_AREB6_01_M00412 TRANSFAC - 205535157 205535169 0.0E+00 TATTTACCTGTGT 13 V_GABPA_02_M02074 TRANSFAC + 205533178 205533187 1.0E-05 ACCGGATATT 10 V_BACH2_01_M00490 TRANSFAC + 205540470 205540480 4.0E-06 TGTGAGTCATC 11 V_FOXA2_04_M02749 TRANSFAC + 205535158 205535174 8.0E-06 CACAGGTAAATATACTC 17 V_CEBP_Q3_M00770 TRANSFAC + 205533183 205533194 2.0E-06 ATATTTGGTAAA 12 V_OCT1_Q5_01_M00930 TRANSFAC + 205533227 205533237 6.0E-06 GTATTTGCATT 11 V_CEBP_01_M00159 TRANSFAC + 205533184 205533196 1.0E-06 TATTTGGTAAAGG 13 V_POU2F3_01_M01476 TRANSFAC - 205533225 205533240 5.0E-06 ATGAATGCAAATACAG 16 V_AP2_Q6_M00189 TRANSFAC + 205538131 205538142 6.0E-06 CTCCCGCGGGCG 12 V_OCT_C_M00210 TRANSFAC + 205533226 205533238 1.0E-05 TGTATTTGCATTC 13 V_LDSPOLYA_B_M00317 TRANSFAC - 205535150 205535165 4.0E-06 TACCTGTGTTCTAACT 16 V_CETS2_02_M02064 TRANSFAC + 205533178 205533187 8.0E-06 ACCGGATATT 10 V_CETS1P54_02_M00074 TRANSFAC + 205533176 205533188 1.0E-06 CAACCGGATATTT 13 V_AP1_Q6_M00174 TRANSFAC - 205540470 205540480 1.0E-05 GATGACTCACA 11 V_PDEF_02_M02075 TRANSFAC + 205533178 205533187 4.0E-06 ACCGGATATT 10 V_ELK1_05_M01981 TRANSFAC + 205533178 205533187 9.0E-06 ACCGGATATT 10 V_ZFP410_03_M02832 TRANSFAC + 205535937 205535953 9.0E-06 GGATATGGGATATGGAG 17 V_PET1_02_M02072 TRANSFAC + 205533178 205533187 9.0E-06 ACCGGATATT 10 V_ZBED6_01_M01598 TRANSFAC + 205538155 205538166 5.0E-06 CGGGCTCGCCGG 12 V_JUNDM2_04_M02876 TRANSFAC + 205540467 205540482 2.0E-06 CTTTGTGAGTCATCAG 16 V_JUNDM2_04_M02876 TRANSFAC - 205540468 205540483 0.0E+00 ACTGATGACTCACAAA 16 V_OCT1_04_M00138 TRANSFAC - 205533222 205533244 1.0E-05 GCACATGAATGCAAATACAGCAG 23 V_SOX12_04_M02900 TRANSFAC - 205535117 205535132 7.0E-06 CCTCACATAAAAGAAT 16 V_AP1_01_M00517 TRANSFAC + 205540469 205540481 7.0E-06 TTGTGAGTCATCA 13 V_OCT1_B_M00342 TRANSFAC - 205533228 205533237 2.0E-06 AATGCAAATA 10 V_OCT_Q6_M00795 TRANSFAC + 205533227 205533237 4.0E-06 GTATTTGCATT 11 V_AP1_Q4_01_M00926 TRANSFAC + 205540472 205540479 1.0E-05 TGAGTCAT 8 V_ZIC2_05_M02940 TRANSFAC - 205538386 205538400 5.0E-06 CTGCCCAGCAGGAGG 15 V_POU5F1_01_M01307 TRANSFAC - 205533228 205533237 1.0E-06 AATGCAAATA 10 V_OCT2_01_M01368 TRANSFAC - 205533225 205533240 4.0E-06 ATGAATGCAAATACAG 16 V_OCT1_Q6_M00195 TRANSFAC - 205533226 205533240 5.0E-06 ATGAATGCAAATACA 15 V_FRA1_Q5_M01267 TRANSFAC + 205540472 205540479 1.0E-05 TGAGTCAT 8 V_NFE2_01_M00037 TRANSFAC - 205540471 205540481 8.0E-06 TGATGACTCAC 11 V_PAX4_04_M00380 TRANSFAC - 205535143 205535172 9.0E-06 GTATATTTACCTGTGTTCTAACTCCACCCC 30 V_ZIC1_05_M02939 TRANSFAC - 205538386 205538400 6.0E-06 CTGCCCAGCAGGAGG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.