Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CSTF2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1478 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa chrX + 100070347 - 100075847 100075347 Transcription Factor Binding Sites   Download all TFBS in the CSTF2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 100075119 100075135 6.0E-06 TTATTAATTTTCTCTTA 17 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 100075706 100075723 4.0E-06 TTCATGAGCTTCAATTAT 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 100075706 100075723 4.0E-06 ATAATTGAAGCTCATGAA 18 RFX4_RFX_DBD_dimeric_16_1 SELEX + 100075061 100075076 6.0E-06 TGTTACCATGGTAAAG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 100075061 100075076 3.0E-06 CTTTACCATGGTAACA 16 Spz1_MA0111.1 JASPAR - 100075151 100075161 1.0E-06 AGGGTTTCAGC 11 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 100075061 100075076 3.0E-06 TGTTACCATGGTAAAG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 100075061 100075076 3.0E-06 CTTTACCATGGTAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 100075061 100075076 3.0E-06 TGTTACCATGGTAAAG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 100075061 100075076 3.0E-06 CTTTACCATGGTAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 100075061 100075076 1.0E-06 TGTTACCATGGTAAAG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 100075061 100075076 1.0E-06 CTTTACCATGGTAACA 16 V_SAP1A_01_M01167 TRANSFAC + 100075381 100075391 8.0E-06 CACCGGAAGCC 11 V_AP1_Q2_M00173 TRANSFAC - 100070821 100070831 3.0E-06 AATGACTAAGA 11 V_DBX1_01_M01483 TRANSFAC + 100075122 100075138 1.0E-06 GAGAAAATTAATAAGAA 17 V_GAF_Q6_M01209 TRANSFAC + 100075618 100075628 7.0E-06 GATATTCCCAT 11 V_AML3_Q6_M01856 TRANSFAC - 100075091 100075098 1.0E-05 AACCACAA 8 V_CEBP_01_M00159 TRANSFAC - 100074954 100074966 9.0E-06 TATTTGCTAAACC 13 V_MAF_Q6_M00648 TRANSFAC + 100075134 100075149 4.0E-06 AAGAAGGAAGTCTGCA 16 V_CDP_04_M01344 TRANSFAC - 100070824 100070838 2.0E-06 GAGTGATAATGACTA 15 V_OCT1_02_M00136 TRANSFAC + 100074963 100074977 2.0E-06 AATAATATGCACGCT 15 V_AML2_01_M01759 TRANSFAC - 100075091 100075098 1.0E-05 AACCACAA 8 V_AP1_Q4_M00188 TRANSFAC - 100070821 100070831 3.0E-06 AATGACTAAGA 11 V_IK1_01_M00086 TRANSFAC - 100075618 100075630 4.0E-06 GAATGGGAATATC 13 V_CUX1_04_M02959 TRANSFAC - 100070824 100070838 2.0E-06 GAGTGATAATGACTA 15 V_HOX13_01_M00023 TRANSFAC + 100070816 100070845 8.0E-06 GCTCTTCTTAGTCATTATCACTCCATTTTC 30 V_PIT1_01_M01465 TRANSFAC - 100075122 100075138 7.0E-06 TTCTTATTAATTTTCTC 17 V_PIT1_01_M01465 TRANSFAC + 100075123 100075139 8.0E-06 AGAAAATTAATAAGAAG 17 V_NCX_02_M01420 TRANSFAC + 100075122 100075138 0.0E+00 GAGAAAATTAATAAGAA 17 V_LHX3b_01_M01971 TRANSFAC - 100075125 100075134 7.0E-06 TATTAATTTT 10 V_HOXA7_02_M01336 TRANSFAC + 100075121 100075137 9.0E-06 AGAGAAAATTAATAAGA 17 V_BRN4_01_M01473 TRANSFAC - 100075122 100075138 9.0E-06 TTCTTATTAATTTTCTC 17 V_BRN4_01_M01473 TRANSFAC + 100075123 100075139 9.0E-06 AGAAAATTAATAAGAAG 17 V_IPF1_05_M01255 TRANSFAC + 100075124 100075135 7.0E-06 GAAAATTAATAA 12 V_NKX61_02_M01469 TRANSFAC - 100075122 100075137 3.0E-06 TCTTATTAATTTTCTC 16 V_FOX_Q2_M00809 TRANSFAC - 100074957 100074969 2.0E-06 TATTATTTGCTAA 13 V_HOXD8_01_M01432 TRANSFAC + 100075122 100075138 9.0E-06 GAGAAAATTAATAAGAA 17 V_HNF3B_Q6_M02014 TRANSFAC - 100074959 100074967 1.0E-05 TTATTTGCT 9 V_PIT1_Q6_M00802 TRANSFAC - 100075127 100075144 5.0E-06 ACTTCCTTCTTATTAATT 18 V_BRN3C_01_M01408 TRANSFAC - 100075122 100075137 7.0E-06 TCTTATTAATTTTCTC 16 V_LPOLYA_B_M00318 TRANSFAC - 100075086 100075093 7.0E-06 CAATAAAG 8 V_CEBPA_Q6_M01866 TRANSFAC + 100074953 100074965 7.0E-06 AGGTTTAGCAAAT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.