Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF578 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 147660 zinc finger protein 578 chr19 + 52951828 - 52957328 52956828 Transcription Factor Binding Sites   Download all TFBS in the ZNF578 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GABPA_MA0062.2 JASPAR + 52956770 52956780 1.0E-06 CCGGAAGTGAA 11 NHLH1_MA0048.1 JASPAR + 52956742 52956753 7.0E-06 CCTCAGCTGCGC 12 ELF4_ETS_full_monomeric_12_1 SELEX + 52956767 52956778 0.0E+00 AACCCGGAAGTG 12 STAT1_MA0137.2 JASPAR + 52956756 52956770 1.0E-06 GGTTTCCTGGAAACC 15 STAT1_MA0137.2 JASPAR - 52956756 52956770 1.0E-06 GGTTTCCAGGAAACC 15 Klf4_MA0039.2 JASPAR - 52956703 52956712 1.0E-05 AGGGTGGGGC 10 ELF3_ETS_full_monomeric_13_1 SELEX + 52956767 52956779 0.0E+00 AACCCGGAAGTGA 13 znf143_MA0088.1 JASPAR - 52956773 52956792 8.0E-06 CACGCCCCATGATTCACTTC 20 SP4_C2H2_full_monomeric_17_1 SELEX + 52956685 52956701 8.0E-06 CAGACCCCGCCCCTCAC 17 RFX4_RFX_DBD_dimeric_15_1 SELEX - 52956756 52956770 5.0E-06 GGTTTCCAGGAAACC 15 Stat3_MA0144.1 JASPAR - 52956758 52956767 1.0E-06 TTCCAGGAAA 10 Stat3_MA0144.1 JASPAR + 52956759 52956768 4.0E-06 TTCCTGGAAA 10 EHF_ETS_full_monomeric_12_1 SELEX + 52956767 52956778 0.0E+00 AACCCGGAAGTG 12 ELF5_ETS_full_monomeric_11_1 SELEX + 52956768 52956778 2.0E-06 ACCCGGAAGTG 11 ELF1_ETS_full_monomeric_12_1 SELEX + 52956767 52956778 0.0E+00 AACCCGGAAGTG 12 ELF3_ETS_DBD_monomeric_12_1 SELEX + 52956767 52956778 0.0E+00 AACCCGGAAGTG 12 V_TEL1_02_M02070 TRANSFAC + 52956769 52956778 5.0E-06 CCCGGAAGTG 10 V_NERF_01_M01976 TRANSFAC + 52956769 52956778 9.0E-06 CCCGGAAGTG 10 V_SP1_Q6_01_M00931 TRANSFAC - 52956688 52956697 7.0E-06 GGGGCGGGGT 10 V_STAT5B_01_M00459 TRANSFAC + 52956756 52956770 1.0E-06 GGTTTCCTGGAAACC 15 V_STAT5B_01_M00459 TRANSFAC - 52956756 52956770 3.0E-06 GGTTTCCAGGAAACC 15 V_SP1_02_M01303 TRANSFAC - 52956687 52956697 8.0E-06 GGGGCGGGGTC 11 V_ELF2_02_M02054 TRANSFAC + 52956769 52956778 8.0E-06 CCCGGAAGTG 10 V_GC_01_M00255 TRANSFAC - 52956686 52956699 6.0E-06 GAGGGGCGGGGTCT 14 V_SP1_Q6_M00196 TRANSFAC - 52956687 52956699 3.0E-06 GAGGGGCGGGGTC 13 V_IRF3_Q3_M01279 TRANSFAC + 52956862 52956874 0.0E+00 TGAGTTTCCCTTT 13 V_EVI1_01_M00078 TRANSFAC + 52956874 52956889 4.0E-06 TGTCTAGATTAGATCC 16 V_GADP_01_M01258 TRANSFAC - 52956767 52956778 2.0E-06 CACTTCCGGGTT 12 V_TEL2_Q6_M00678 TRANSFAC - 52956770 52956779 9.0E-06 TCACTTCCGG 10 V_KLF7_03_M02773 TRANSFAC + 52956685 52956700 4.0E-06 CAGACCCCGCCCCTCA 16 V_STAT4_Q5_M02117 TRANSFAC - 52956758 52956767 7.0E-06 TTCCAGGAAA 10 V_TCF1_07_M02919 TRANSFAC + 52956873 52956886 1.0E-06 TTGTCTAGATTAGA 14 V_TEL1_01_M01993 TRANSFAC + 52956769 52956778 5.0E-06 CCCGGAAGTG 10 V_SP1_01_M00008 TRANSFAC - 52956688 52956697 3.0E-06 GGGGCGGGGT 10 V_STAT3_03_M01595 TRANSFAC - 52956754 52956769 1.0E-06 GTTTCCAGGAAACCGC 16 V_STAT3_03_M01595 TRANSFAC + 52956757 52956772 9.0E-06 GTTTCCTGGAAACCCG 16 V_ELF4_01_M01979 TRANSFAC + 52956769 52956778 4.0E-06 CCCGGAAGTG 10 V_HBP1_04_M02866 TRANSFAC + 52956865 52956881 8.0E-06 GTTTCCCTTTGTCTAGA 17 V_EHF_06_M02745 TRANSFAC + 52956765 52956779 1.0E-06 GAAACCCGGAAGTGA 15 V_MYF6_04_M02885 TRANSFAC + 52956648 52956662 1.0E-06 GAGAACAGACGCGCC 15 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 52956705 52956713 8.0E-06 GAGGGTGGG 9 V_NRSF_01_M00256 TRANSFAC - 52956899 52956919 6.0E-06 GCCAACACCAGGTACAGAAGC 21 V_STAT1STAT1_Q3_M01212 TRANSFAC - 52956757 52956769 1.0E-06 GTTTCCAGGAAAC 13 V_STAT5A_01_M00457 TRANSFAC + 52956756 52956770 2.0E-06 GGTTTCCTGGAAACC 15 V_STAT5A_01_M00457 TRANSFAC - 52956756 52956770 2.0E-06 GGTTTCCAGGAAACC 15 V_ELF_02_M02053 TRANSFAC + 52956769 52956778 1.0E-05 CCCGGAAGTG 10 V_SP1_Q2_01_M00933 TRANSFAC + 52956689 52956698 7.0E-06 CCCCGCCCCT 10 V_ZFP128_04_M02932 TRANSFAC + 52956970 52956983 3.0E-06 GGTATATTAATACG 14 V_ZFP128_04_M02932 TRANSFAC - 52956970 52956983 7.0E-06 CGTATTAATATACC 14 V_SP1_Q4_01_M00932 TRANSFAC - 52956687 52956699 5.0E-06 GAGGGGCGGGGTC 13 V_STAT1_Q6_M01823 TRANSFAC - 52956758 52956767 2.0E-06 TTCCAGGAAA 10 V_STAT1_05_M01260 TRANSFAC - 52956749 52956770 3.0E-06 GGTTTCCAGGAAACCGCGCGCA 22 V_STAT1_05_M01260 TRANSFAC + 52956756 52956777 2.0E-06 GGTTTCCTGGAAACCCGGAAGT 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.