Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C18orf25 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 147339 chromosome 18 open reading frame 25 chr18 + 43748987 - 43754487 43753987 Transcription Factor Binding Sites   Download all TFBS in the C18orf25 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 43749565 43749575 2.0E-06 CATGAGTCATT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 43749565 43749575 1.0E-06 AATGACTCATG 11 CTCF_MA0139.1 JASPAR + 43753459 43753477 0.0E+00 CCACCAGCAGGTGGCGGTC 19 HSF2_HSF_DBD_trimeric_13_1 SELEX + 43749518 43749530 3.0E-06 TTCTAGAGCATTC 13 HSF1_HSF_full_trimeric_13_1 SELEX + 43749518 43749530 3.0E-06 TTCTAGAGCATTC 13 TEF_bZIP_DBD_dimeric_12_1 SELEX + 43749658 43749669 3.0E-06 GGTTACATAACT 12 TEF_bZIP_DBD_dimeric_12_1 SELEX - 43749658 43749669 7.0E-06 AGTTATGTAACC 12 HLF_bZIP_full_dimeric_12_1 SELEX + 43749658 43749669 6.0E-06 GGTTACATAACT 12 HLF_bZIP_full_dimeric_12_1 SELEX - 43749658 43749669 6.0E-06 AGTTATGTAACC 12 EWSR1-FLI1_MA0149.1 JASPAR - 43753329 43753346 3.0E-06 CGAAGAAGGGGAGGAGGG 18 NFIL3_MA0025.1 JASPAR - 43749657 43749667 1.0E-06 TTATGTAACCT 11 DBP_bZIP_full_dimeric_12_1 SELEX + 43749658 43749669 6.0E-06 GGTTACATAACT 12 DBP_bZIP_full_dimeric_12_1 SELEX - 43749658 43749669 5.0E-06 AGTTATGTAACC 12 HSF4_HSF_DBD_trimeric_13_1 SELEX + 43749518 43749530 3.0E-06 TTCTAGAGCATTC 13 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 43749819 43749826 7.0E-06 TTAATCCT 8 CTCF_C2H2_full_monomeric_17_1 SELEX - 43753460 43753476 4.0E-06 ACCGCCACCTGCTGGTG 17 NRL_bZIP_DBD_monomeric_11_1 SELEX - 43749915 43749925 7.0E-06 GAAATGCTGAC 11 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 43749658 43749669 4.0E-06 GGTTACATAACT 12 PITX1_homeodomain_full_monomeric_9_1 SELEX + 43749818 43749826 2.0E-06 TTTAATCCT 9 ELK1_MA0028.1 JASPAR - 43754716 43754725 5.0E-06 GAGCCGGAAA 10 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 43749669 43749679 6.0E-06 ACCCTCAGGCA 11 JDP2_bZIP_full_dimeric_9_1 SELEX + 43749566 43749574 4.0E-06 ATGAGTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 43749566 43749574 2.0E-06 ATGACTCAT 9 HLF_MA0043.1 JASPAR + 43749658 43749669 4.0E-06 GGTTACATAACT 12 ETV6_ETS_full_monomeric_10_1 SELEX + 43753994 43754003 9.0E-06 GGCGGAAGTG 10 NHLH1_bHLH_full_dimeric_10_1 SELEX + 43753950 43753959 9.0E-06 CGCAGCTGCC 10 Zfx_MA0146.1 JASPAR + 43754316 43754329 8.0E-06 AGGGCCGCGGCCTG 14 V_NFAT_Q4_01_M00935 TRANSFAC + 43749432 43749441 7.0E-06 ATGGAAATTT 10 V_CEBPG_Q6_M00622 TRANSFAC + 43754984 43754996 1.0E-06 TTTATTTCAAAAC 13 V_E2A_Q6_01_M02088 TRANSFAC - 43753462 43753474 4.0E-06 CGCCACCTGCTGG 13 V_E2F4_Q6_M02090 TRANSFAC + 43753816 43753825 3.0E-06 GCGGGAAAGA 10 V_BACH2_01_M00490 TRANSFAC + 43749565 43749575 9.0E-06 CATGAGTCATT 11 V_ZFP410_04_M02936 TRANSFAC + 43753328 43753344 8.0E-06 GCCCTCCTCCCCTTCTT 17 V_SMAD3_Q6_01_M01888 TRANSFAC - 43753898 43753910 9.0E-06 AGCCAGACAGCGC 13 V_NRSF_Q4_M01028 TRANSFAC - 43753859 43753877 2.0E-06 GCGCTCCTCCCGCTGCAGA 19 V_ZFX_01_M01593 TRANSFAC - 43754317 43754332 2.0E-06 AGCCAGGCCGCGGCCC 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 43754025 43754036 8.0E-06 AAATGTCACCAG 12 V_MAF_Q6_M00648 TRANSFAC - 43749931 43749946 1.0E-06 TAGAAGGCAGTGGCCT 16 V_NFAT2_01_M01748 TRANSFAC + 43749432 43749440 5.0E-06 ATGGAAATT 9 V_BACH1_01_M00495 TRANSFAC + 43749563 43749577 0.0E+00 ATCATGAGTCATTCT 15 V_ETV7_01_M02071 TRANSFAC - 43753986 43753995 3.0E-06 CCCGGAAACA 10 V_ETV7_01_M02071 TRANSFAC - 43754621 43754630 7.0E-06 CCCGGAAAAG 10 V_DBP_Q6_01_M01872 TRANSFAC - 43749660 43749667 5.0E-06 TTATGTAA 8 V_E4BP4_01_M00045 TRANSFAC - 43749658 43749669 1.0E-06 AGTTATGTAACC 12 V_E12_Q6_M00693 TRANSFAC + 43753464 43753474 6.0E-06 AGCAGGTGGCG 11 V_E12_Q6_M00693 TRANSFAC - 43754789 43754799 2.0E-06 GGCAGGTGTCG 11 V_CEBPB_02_M00117 TRANSFAC + 43749657 43749670 7.0E-06 AGGTTACATAACTG 14 V_AP1_Q6_01_M00925 TRANSFAC - 43749566 43749574 4.0E-06 ATGACTCAT 9 V_NKX25_02_M00241 TRANSFAC + 43749269 43749276 7.0E-06 CTTAATTG 8 V_STAT5A_02_M00460 TRANSFAC - 43753764 43753787 4.0E-06 TTCCCGAAATGTCTTTCCCGGGGG 24 V_JUNDM2_04_M02876 TRANSFAC + 43749562 43749577 4.0E-06 AATCATGAGTCATTCT 16 V_JUNDM2_04_M02876 TRANSFAC - 43749563 43749578 9.0E-06 TAGAATGACTCATGAT 16 V_NFE4_Q5_M02105 TRANSFAC + 43753372 43753383 5.0E-06 CACCCTCCCCAG 12 V_WHN_B_M00332 TRANSFAC + 43749831 43749841 9.0E-06 AATGACGCTGT 11 V_AP1_C_M00199 TRANSFAC + 43749566 43749574 8.0E-06 ATGAGTCAT 9 V_SP3_Q3_M00665 TRANSFAC - 43753374 43753387 1.0E-06 AGCCCTGGGGAGGG 14 V_CTCF_02_M01259 TRANSFAC + 43753456 43753475 1.0E-06 GTCCCACCAGCAGGTGGCGG 20 V_CTCF_01_M01200 TRANSFAC + 43753458 43753477 0.0E+00 CCCACCAGCAGGTGGCGGTC 20 V_MAF_Q6_01_M00983 TRANSFAC + 43749564 43749574 9.0E-06 TCATGAGTCAT 11 V_ZNF515_01_M01231 TRANSFAC + 43749610 43749619 8.0E-06 CTGGGGGGTC 10 V_PTF1BETA_Q6_M00657 TRANSFAC + 43753298 43753311 7.0E-06 GGGAAACGCTCCAC 14 V_AP1_Q4_01_M00926 TRANSFAC + 43749567 43749574 1.0E-05 TGAGTCAT 8 V_TAL1_01_M01591 TRANSFAC - 43753697 43753709 3.0E-06 CTCCCTTTTCTGT 13 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 43753370 43753378 8.0E-06 GAGGGTGGG 9 V_SMAD3_03_M02794 TRANSFAC - 43753897 43753913 4.0E-06 AAAAGCCAGACAGCGCC 17 V_FRA1_Q5_M01267 TRANSFAC + 43749567 43749574 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC - 43753329 43753340 4.0E-06 AGGGGAGGAGGG 12 V_NRF2_Q4_M00821 TRANSFAC + 43749563 43749575 2.0E-06 ATCATGAGTCATT 13 V_E47_01_M00002 TRANSFAC + 43753462 43753476 8.0E-06 CCAGCAGGTGGCGGT 15 V_E47_01_M00002 TRANSFAC - 43754787 43754801 5.0E-06 GGGGCAGGTGTCGGC 15 V_BBX_03_M02739 TRANSFAC - 43749437 43749451 8.0E-06 AAATACAGTGAAATT 15 V_HSF2_02_M01244 TRANSFAC - 43749518 43749530 2.0E-06 GAATGCTCTAGAA 13 V_EWSR1FLI1_01_M02252 TRANSFAC - 43753329 43753346 3.0E-06 CGAAGAAGGGGAGGAGGG 18 V_HLF_01_M00260 TRANSFAC + 43749659 43749668 7.0E-06 GTTACATAAC 10 V_BRCA_01_M01082 TRANSFAC - 43753799 43753806 1.0E-05 TTCTGTTG 8 V_AP2_Q3_M00800 TRANSFAC + 43754660 43754675 9.0E-06 GTCCCCGGGCTGCGGG 16 V_NANOG_02_M01247 TRANSFAC - 43753195 43753214 3.0E-06 TTTTGAGAAGAAAAATAATA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.