Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TRIM16L Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 147166 tripartite motif containing 16-like chr17 + 18620401 - 18625901 18625401 Transcription Factor Binding Sites   Download all TFBS in the TRIM16L promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NF-kappaB_MA0061.1 JASPAR - 18622159 18622168 3.0E-06 GGGACTTTCC 10 NHLH1_MA0048.1 JASPAR + 18622629 18622640 2.0E-06 CCGCAGCTGCTT 12 NHLH1_MA0048.1 JASPAR - 18622629 18622640 5.0E-06 AAGCAGCTGCGG 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 18622755 18622766 6.0E-06 GCTTTTAATAGC 12 REL_MA0101.1 JASPAR - 18622658 18622667 9.0E-06 GGGGAATTCC 10 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 18622080 18622096 3.0E-06 GACTTGTTTCTCCAGTT 17 RELA_MA0107.1 JASPAR - 18622159 18622168 6.0E-06 GGGACTTTCC 10 NHLH1_bHLH_full_dimeric_10_1 SELEX + 18622630 18622639 4.0E-06 CGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 18622630 18622639 5.0E-06 AGCAGCTGCG 10 V_FOXP1_01_M00987 TRANSFAC + 18622782 18622801 1.0E-06 TTTTTTTTCTTTTTCTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 18622788 18622807 1.0E-06 TTCTTTTTCTTTTTGTATAT 20 V_NFKAPPAB65_01_M00052 TRANSFAC - 18622159 18622168 7.0E-06 GGGACTTTCC 10 V_NFKB_C_M00208 TRANSFAC - 18622158 18622169 2.0E-06 GGGGACTTTCCT 12 V_AP1_Q2_M00173 TRANSFAC + 18622146 18622156 1.0E-06 GGTGACTCAGT 11 V_TCF3_01_M01594 TRANSFAC + 18622785 18622797 5.0E-06 TTTTTCTTTTTCT 13 V_OSF2_Q6_M00731 TRANSFAC - 18622202 18622209 1.0E-05 ACCACAAA 8 V_HMGIY_Q3_M01010 TRANSFAC + 18622131 18622145 2.0E-06 AGTGCATTTTCTTGG 15 V_EVI1_04_M00081 TRANSFAC - 18622777 18622791 7.0E-06 AGAAAAAAAAAGAAT 15 V_EVI1_04_M00081 TRANSFAC - 18622782 18622796 4.0E-06 GAAAAAGAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 18622787 18622801 6.0E-06 AAAAAGAAAAAGAAA 15 V_BCL6_01_M01183 TRANSFAC + 18622778 18622793 7.0E-06 TTCTTTTTTTTTCTTT 16 V_DEAF1_02_M01002 TRANSFAC - 18622153 18622177 1.0E-05 ACATAATCGGGGACTTTCCTGACTG 25 V_RELBP52_01_M01239 TRANSFAC - 18622658 18622667 6.0E-06 GGGGAATTCC 10 V_MEF2_02_M00231 TRANSFAC - 18622751 18622772 1.0E-06 TTCACTGCTTTTAATAGCTTCT 22 V_IRF_Q6_01_M00972 TRANSFAC - 18622786 18622796 7.0E-06 GAAAAAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 18622783 18622798 3.0E-06 AAGAAAAAGAAAAAAA 16 V_P50P50_Q3_M01223 TRANSFAC - 18622656 18622668 3.0E-06 GGGGGAATTCCAG 13 V_P53_DECAMER_Q2_M00761 TRANSFAC + 18622088 18622097 9.0E-06 AAACAAGTCT 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 18622658 18622669 9.0E-06 GGAATTCCCCCA 12 V_AP4_Q6_02_M01860 TRANSFAC - 18622626 18622638 4.0E-06 GCAGCTGCGGGCA 13 V_TCFAP2E_04_M02926 TRANSFAC - 18622780 18622793 6.0E-06 AAAGAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 18622781 18622794 1.0E-06 AAAAGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 18622782 18622795 0.0E+00 AAAAAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 18622791 18622804 3.0E-06 TACAAAAAGAAAAA 14 V_BARBIE_01_M00238 TRANSFAC - 18622369 18622383 7.0E-06 GTTTAAAGGTGGTGG 15 V_BARBIE_01_M00238 TRANSFAC - 18622730 18622744 8.0E-06 ATTTAAAGCTGCGAG 15 V_AP1_Q6_M00174 TRANSFAC + 18622146 18622156 2.0E-06 GGTGACTCAGT 11 V_PR_01_M00954 TRANSFAC + 18622338 18622364 5.0E-06 CCTGTTGCTAAGGTGTGTTCTGCTGTG 27 V_ZFP105_03_M02827 TRANSFAC - 18622778 18622792 2.0E-06 AAGAAAAAAAAAGAA 15 V_ZFP105_03_M02827 TRANSFAC - 18622794 18622808 3.0E-06 AATATACAAAAAGAA 15 V_NKX31_02_M02782 TRANSFAC + 18622171 18622187 4.0E-06 ATTATGTACTTAAGGAG 17 V_NKX61_01_M00424 TRANSFAC - 18622753 18622765 2.0E-06 CTTTTAATAGCTT 13 V_CREL_01_M00053 TRANSFAC - 18622658 18622667 9.0E-06 GGGGAATTCC 10 V_RSRFC4_Q2_M00407 TRANSFAC - 18622752 18622768 9.0E-06 CTGCTTTTAATAGCTTC 17 V_NFKB_Q6_M00194 TRANSFAC - 18622157 18622170 2.0E-06 CGGGGACTTTCCTG 14 V_AP1_Q4_M00188 TRANSFAC + 18622146 18622156 1.0E-06 GGTGACTCAGT 11 V_HNF3_Q6_M00791 TRANSFAC - 18622795 18622807 7.0E-06 ATATACAAAAAGA 13 V_IRF_Q6_M00772 TRANSFAC + 18622782 18622796 2.0E-06 TTTTTTTTCTTTTTC 15 V_STAT5A_02_M00460 TRANSFAC + 18622064 18622087 2.0E-06 TTCAAGGAACAGGAATAACTGGAG 24 V_MEF2_03_M00232 TRANSFAC - 18622751 18622772 5.0E-06 TTCACTGCTTTTAATAGCTTCT 22 V_SOX12_04_M02900 TRANSFAC - 18622786 18622801 4.0E-06 AAAAAGAAAAAGAAAA 16 V_HFH1_01_M00129 TRANSFAC + 18622311 18622322 9.0E-06 TGCTGTTTAGAT 12 V_SRF_Q5_02_M01007 TRANSFAC + 18622194 18622212 9.0E-06 TCTCTCCTTTTGTGGTAGT 19 V_NKX23_01_M01457 TRANSFAC - 18622170 18622185 1.0E-06 CCTTAAGTACATAATC 16 V_NKX32_02_M01482 TRANSFAC + 18622171 18622187 4.0E-06 ATTATGTACTTAAGGAG 17 V_GATA4_Q3_M00632 TRANSFAC + 18622217 18622228 7.0E-06 AAATAGCAGAGA 12 V_MTF1_06_M02882 TRANSFAC - 18622780 18622793 2.0E-06 AAAGAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 18622782 18622795 9.0E-06 AAAAAGAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 18622783 18622796 3.0E-06 GAAAAAGAAAAAAA 14 V_AP1FJ_Q2_M00172 TRANSFAC + 18622146 18622156 0.0E+00 GGTGACTCAGT 11 V_HEN1_02_M00058 TRANSFAC + 18622624 18622645 2.0E-06 TCTGCCCGCAGCTGCTTCCCTC 22 V_HEN1_02_M00058 TRANSFAC - 18622624 18622645 2.0E-06 GAGGGAAGCAGCTGCGGGCAGA 22 V_AIRE_01_M00999 TRANSFAC + 18622066 18622091 5.0E-06 CAAGGAACAGGAATAACTGGAGAAAC 26 V_FOX_Q2_M00809 TRANSFAC + 18622170 18622182 4.0E-06 GATTATGTACTTA 13 V_SRF_Q5_01_M00922 TRANSFAC - 18622194 18622208 8.0E-06 CCACAAAAGGAGAGA 15 V_IRF1_Q6_01_M01881 TRANSFAC + 18622784 18622797 8.0E-06 TTTTTTCTTTTTCT 14 V_NFKAPPAB_01_M00054 TRANSFAC - 18622159 18622168 3.0E-06 GGGACTTTCC 10 V_SRF_06_M02916 TRANSFAC - 18622777 18622793 2.0E-06 AAAGAAAAAAAAAGAAT 17 V_SRF_06_M02916 TRANSFAC - 18622778 18622794 1.0E-06 AAAAGAAAAAAAAAGAA 17 V_SRF_06_M02916 TRANSFAC - 18622779 18622795 6.0E-06 AAAAAGAAAAAAAAAGA 17 V_SRF_06_M02916 TRANSFAC - 18622780 18622796 7.0E-06 GAAAAAGAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC - 18622781 18622797 2.0E-06 AGAAAAAGAAAAAAAAA 17 V_PPARG_02_M00515 TRANSFAC - 18622714 18622736 8.0E-06 CTGCGAGTCATTATGCCCTAATA 23 V_RFX3_04_M02788 TRANSFAC - 18622334 18622356 5.0E-06 AACACACCTTAGCAACAGGCTCC 23 V_MEF2A_05_M01301 TRANSFAC + 18622754 18622765 7.0E-06 AGCTATTAAAAG 12 V_SMAD1_01_M01590 TRANSFAC - 18622784 18622795 3.0E-06 AAAAAGAAAAAA 12 V_NANOG_02_M01247 TRANSFAC - 18622780 18622799 0.0E+00 AAAGAAAAAGAAAAAAAAAG 20 V_NANOG_02_M01247 TRANSFAC - 18622786 18622805 2.0E-06 ATACAAAAAGAAAAAGAAAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.