Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C17orf50 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 146853 chromosome 17 open reading frame 50 chr17 + 34082915 - 34088415 34087915 Transcription Factor Binding Sites   Download all TFBS in the C17orf50 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 34091246 34091264 1.0E-06 CACCCAGCAGGTGGCGCTG 19 ZBTB7A_C2H2_DBD_monomeric_12_1 SELEX + 34091873 34091884 9.0E-06 AGCGCCCACCGA 12 TBR1_TBX_DBD_monomeric_10_1 SELEX + 34091024 34091033 5.0E-06 AGGTGTGAAG 10 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 34083990 34084007 5.0E-06 GCAGATCACTTGAGGTCA 18 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 34083991 34084007 5.0E-06 CAGATCACTTGAGGTCA 17 EWSR1-FLI1_MA0149.1 JASPAR + 34091087 34091104 5.0E-06 AGAGGAAGGGAAGGAGGG 18 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 34091409 34091419 8.0E-06 TGCCCCAGGCA 11 EOMES_TBX_DBD_monomeric_13_1 SELEX + 34091023 34091035 7.0E-06 CAGGTGTGAAGAC 13 T_MA0009.1 JASPAR + 34091022 34091032 7.0E-06 GCAGGTGTGAA 11 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 34083991 34084007 1.0E-05 CAGATCACTTGAGGTCA 17 SP1_MA0079.2 JASPAR - 34091398 34091407 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR + 34091890 34091899 7.0E-06 CCCCGCCCCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 34091247 34091263 9.0E-06 AGCGCCACCTGCTGGGT 17 TBX21_TBX_full_monomeric_10_1 SELEX + 34091023 34091032 6.0E-06 CAGGTGTGAA 10 FEV_MA0156.1 JASPAR - 34091671 34091678 1.0E-05 CAGGAAAT 8 POU3F3_POU_DBD_dimeric_12_1 SELEX + 34090959 34090970 1.0E-05 ATGAAAAATTAT 12 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 34090955 34090966 4.0E-06 ATACATGAAAAA 12 V_FOXP1_01_M00987 TRANSFAC - 34090947 34090966 1.0E-06 TTTTTCATGTATTTATTTAT 20 V_E2A_Q6_01_M02088 TRANSFAC - 34091249 34091261 4.0E-06 CGCCACCTGCTGG 13 V_HSF1_Q6_M01023 TRANSFAC + 34092312 34092328 7.0E-06 TTGCCAGACCATTCTCG 17 V_GCM_Q2_M00634 TRANSFAC - 34092431 34092442 7.0E-06 CATGCCAGCATT 12 V_FOXA2_04_M02749 TRANSFAC + 34090946 34090962 7.0E-06 AATAAATAAATACATGA 17 V_BCL6_01_M01183 TRANSFAC - 34090949 34090964 0.0E+00 TTTCATGTATTTATTT 16 V_EGR_Q6_M00807 TRANSFAC - 34091891 34091901 6.0E-06 GTGGGGGCGGG 11 V_TBR2_01_M01774 TRANSFAC + 34091024 34091032 3.0E-06 AGGTGTGAA 9 V_SOX11_04_M02899 TRANSFAC + 34090963 34090976 2.0E-06 AAAATTATTCTGGA 14 V_HNF3_Q6_01_M01012 TRANSFAC - 34090945 34090962 1.0E-06 TCATGTATTTATTTATTT 18 V_SP1_03_M02281 TRANSFAC - 34091398 34091407 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC + 34091890 34091899 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC - 34091888 34091898 3.0E-06 GGGGCGGGGAG 11 V_PU1_Q4_M01172 TRANSFAC - 34091084 34091102 9.0E-06 CTCCTTCCCTTCCTCTTGC 19 V_TCFAP2E_04_M02926 TRANSFAC + 34090956 34090969 4.0E-06 TACATGAAAAATTA 14 V_CDX_Q5_M00991 TRANSFAC + 34090946 34090963 0.0E+00 AATAAATAAATACATGAA 18 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 34092353 34092367 0.0E+00 TGAGGTCAGTGCTGT 15 V_SOX13_03_M02797 TRANSFAC - 34090961 34090976 8.0E-06 TCCAGAATAATTTTTC 16 V_FKLF_Q5_M01837 TRANSFAC + 34092394 34092403 2.0E-06 GGGGTGGGAG 10 V_TEF_Q6_M00672 TRANSFAC + 34092420 34092431 1.0E-06 ATGCTAAAATAA 12 V_E12_Q6_M00693 TRANSFAC + 34091251 34091261 6.0E-06 AGCAGGTGGCG 11 V_KROX_Q6_M00982 TRANSFAC + 34091891 34091904 1.0E-05 CCCGCCCCCACGCA 14 V_IRX4_01_M01410 TRANSFAC - 34090951 34090967 9.0E-06 ATTTTTCATGTATTTAT 17 V_IRX4_01_M01410 TRANSFAC + 34090952 34090968 0.0E+00 TAAATACATGAAAAATT 17 V_IK1_01_M00086 TRANSFAC + 34092523 34092535 0.0E+00 CTTTGGGAATGCC 13 V_TTF1_Q6_M00794 TRANSFAC - 34083994 34084005 7.0E-06 ACCTCAAGTGAT 12 V_ASCL2_03_M02737 TRANSFAC - 34092378 34092394 7.0E-06 CTCCACACCTGCTAGTG 17 V_OCT1_04_M00138 TRANSFAC + 34090951 34090973 1.0E-06 ATAAATACATGAAAAATTATTCT 23 V_IK2_01_M00087 TRANSFAC + 34092523 34092534 2.0E-06 CTTTGGGAATGC 12 V_MUSCLE_INI_B_M00321 TRANSFAC + 34091890 34091910 9.0E-06 CCCCGCCCCCACGCAGCACCA 21 V_OCAB_Q6_M02113 TRANSFAC - 34092363 34092373 7.0E-06 ATATGCACAGC 11 V_BRACH_01_M00150 TRANSFAC + 34091012 34091035 5.0E-06 CTCCCGGCCCGCAGGTGTGAAGAC 24 V_CTCF_02_M01259 TRANSFAC + 34091243 34091262 1.0E-06 CAGCACCCAGCAGGTGGCGC 20 V_IRX3_01_M01318 TRANSFAC - 34090951 34090967 8.0E-06 ATTTTTCATGTATTTAT 17 V_IRX3_01_M01318 TRANSFAC + 34090952 34090968 2.0E-06 TAAATACATGAAAAATT 17 V_CTCF_01_M01200 TRANSFAC + 34091245 34091264 1.0E-06 GCACCCAGCAGGTGGCGCTG 20 V_IRX5_01_M01472 TRANSFAC - 34090951 34090967 6.0E-06 ATTTTTCATGTATTTAT 17 V_IRX5_01_M01472 TRANSFAC + 34090952 34090968 0.0E+00 TAAATACATGAAAAATT 17 V_NEUROD_02_M01288 TRANSFAC - 34090988 34090999 6.0E-06 GTCCTGCTGTCC 12 V_NEUROD_02_M01288 TRANSFAC - 34092511 34092522 2.0E-06 CTCCTGCTGTCT 12 V_GLI3_01_M01596 TRANSFAC + 34092538 34092548 9.0E-06 GTGTGTGGCCT 11 V_SP4_Q5_M01273 TRANSFAC + 34091889 34091899 9.0E-06 TCCCCGCCCCC 11 V_IRX3_02_M01485 TRANSFAC - 34090951 34090967 6.0E-06 ATTTTTCATGTATTTAT 17 V_IRX3_02_M01485 TRANSFAC + 34090952 34090968 0.0E+00 TAAATACATGAAAAATT 17 V_MINI19_B_M00323 TRANSFAC + 34091890 34091910 6.0E-06 CCCCGCCCCCACGCAGCACCA 21 V_HAND1E47_01_M00222 TRANSFAC - 34092412 34092427 1.0E-06 TTTAGCATCTGGTTTT 16 V_GABPBETA_Q3_M01876 TRANSFAC + 34091087 34091097 1.0E-05 AGAGGAAGGGA 11 V_FOXL1_04_M02753 TRANSFAC + 34090946 34090962 9.0E-06 AATAAATAAATACATGA 17 V_FPM315_01_M01587 TRANSFAC + 34091395 34091406 1.0E-06 CAGGGAGGAGGG 12 V_TBX15_02_M01264 TRANSFAC + 34092385 34092402 1.0E-06 AGGTGTGGAGGGGTGGGA 18 V_E47_01_M00002 TRANSFAC + 34091249 34091263 8.0E-06 CCAGCAGGTGGCGCT 15 V_T3RBETA_Q6_01_M02119 TRANSFAC + 34083992 34084008 1.0E-06 AGATCACTTGAGGTCAG 17 V_ETS1_B_M00339 TRANSFAC - 34091665 34091679 5.0E-06 CCAGGAAATGATGGA 15 V_SMAD_Q6_01_M00974 TRANSFAC + 34092506 34092516 4.0E-06 TGGCCAGACAG 11 V_ZFP281_01_M01597 TRANSFAC - 34091890 34091900 6.0E-06 TGGGGGCGGGG 11 V_TBX5_Q5_M01044 TRANSFAC - 34091023 34091032 5.0E-06 TTCACACCTG 10 V_IRX2_01_M01405 TRANSFAC - 34090951 34090967 6.0E-06 ATTTTTCATGTATTTAT 17 V_IRX2_01_M01405 TRANSFAC + 34090952 34090968 0.0E+00 TAAATACATGAAAAATT 17 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 34083998 34084012 1.0E-06 CTTGAGGTCAGGAGC 15 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 34092351 34092365 2.0E-06 GCTGAGGTCAGTGCT 15 V_SOX8_03_M02808 TRANSFAC + 34090960 34090976 1.0E-05 TGAAAAATTATTCTGGA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 34091087 34091104 5.0E-06 AGAGGAAGGGAAGGAGGG 18 V_FOXJ2_01_M00422 TRANSFAC + 34090945 34090962 0.0E+00 AAATAAATAAATACATGA 18 V_SP1_Q2_01_M00933 TRANSFAC + 34091890 34091899 4.0E-06 CCCCGCCCCC 10 V_SOX5_07_M02909 TRANSFAC + 34090960 34090976 5.0E-06 TGAAAAATTATTCTGGA 17 V_IRXB3_01_M01377 TRANSFAC - 34090951 34090967 3.0E-06 ATTTTTCATGTATTTAT 17 V_IRXB3_01_M01377 TRANSFAC + 34090952 34090968 0.0E+00 TAAATACATGAAAAATT 17 V_TCF3_05_M02920 TRANSFAC + 34092420 34092434 1.0E-06 ATGCTAAAATAAATG 15 V_FEV_01_M02269 TRANSFAC - 34091671 34091678 1.0E-05 CAGGAAAT 8 V_T3RALPHA_Q6_M01724 TRANSFAC + 34083998 34084008 1.0E-06 CTTGAGGTCAG 11 V_T3RALPHA_Q6_M01724 TRANSFAC + 34092351 34092361 3.0E-06 GCTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.