Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

BEAN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 146227 brain expressed, associated with NEDD4, 1 chr16 + 66456199 - 66461699 66461199 Transcription Factor Binding Sites   Download all TFBS in the BEAN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 66457031 66457044 1.0E-05 TTATAAACAAATGA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 66457034 66457045 6.0E-06 ATTATAAACAAA 12 NR2F1_MA0017.1 JASPAR + 66456910 66456923 4.0E-06 TGAACTTTAAGCTC 14 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 66456933 66456947 2.0E-06 AACACACCCTCAAAG 15 TBX2_TBX_full_monomeric_11_1 SELEX - 66457054 66457064 9.0E-06 AATGTGTTAAA 11 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 66456974 66456984 8.0E-06 AACACTTAACT 11 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 66456910 66456923 6.0E-06 GAGCTTAAAGTTCA 14 GLIS2_C2H2_DBD_monomeric_14_1 SELEX + 66461190 66461203 8.0E-06 CGCCCCCCGCGACG 14 V_OBOX6_01_M01445 TRANSFAC - 66457039 66457053 8.0E-06 AGAAGCAGATTATAA 15 V_SOX40_04_M02908 TRANSFAC + 66457034 66457049 3.0E-06 TTTGTTTATAATCTGC 16 V_XFD1_01_M00267 TRANSFAC - 66457032 66457045 7.0E-06 ATTATAAACAAATG 14 V_FOXA2_04_M02749 TRANSFAC - 66457031 66457047 3.0E-06 AGATTATAAACAAATGA 17 V_FOXO4_02_M00476 TRANSFAC + 66457032 66457045 6.0E-06 CATTTGTTTATAAT 14 V_SP1_Q6_01_M00931 TRANSFAC - 66461144 66461153 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 66461149 66461158 4.0E-06 GGGGCGGGGC 10 V_ISL2_01_M01328 TRANSFAC - 66456973 66456988 7.0E-06 AAAAAACACTTAACTC 16 V_GATA1_03_M00127 TRANSFAC - 66457038 66457051 1.0E-05 AAGCAGATTATAAA 14 V_FOXJ1_03_M02750 TRANSFAC - 66457030 66457045 0.0E+00 ATTATAAACAAATGAT 16 V_NKX24_01_M01350 TRANSFAC - 66456972 66456987 1.0E-05 AAAAACACTTAACTCA 16 V_GM497_04_M02864 TRANSFAC + 66456930 66456945 6.0E-06 AGAAACACACCCTCAA 16 V_LDSPOLYA_B_M00317 TRANSFAC + 66456977 66456992 0.0E+00 TAAGTGTTTTTTCTTT 16 V_BARBIE_01_M00238 TRANSFAC - 66457096 66457110 6.0E-06 AAAAAAAGGATGTGG 15 V_ETS_Q4_M00771 TRANSFAC - 66456472 66456483 4.0E-06 AACCACTTCCTT 12 V_ELF4_04_M02850 TRANSFAC - 66456980 66456996 1.0E-06 GCTCAAAGAAAAAACAC 17 V_SPI1_03_M02078 TRANSFAC - 66456419 66456428 6.0E-06 TGAGGAAGTT 10 V_COUP_01_M00158 TRANSFAC + 66456910 66456923 4.0E-06 TGAACTTTAAGCTC 14 V_HNF1_Q6_M00790 TRANSFAC + 66457035 66457052 1.0E-05 TTGTTTATAATCTGCTTC 18 V_NKX31_02_M02782 TRANSFAC - 66456972 66456988 5.0E-06 AAAAAACACTTAACTCA 17 V_SP1_Q6_M00196 TRANSFAC - 66461143 66461155 7.0E-06 GCGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 66461148 66461160 6.0E-06 CAGGGGCGGGGCG 13 V_HNF1_Q6_01_M01011 TRANSFAC - 66457033 66457053 5.0E-06 AGAAGCAGATTATAAACAAAT 21 V_SREBP_Q6_M01168 TRANSFAC - 66462240 66462254 5.0E-06 CCTCTCACACCAGTT 15 V_NKX52_01_M01315 TRANSFAC - 66456971 66456987 8.0E-06 AAAAACACTTAACTCAA 17 V_ELF5_01_M01197 TRANSFAC - 66456419 66456429 6.0E-06 ATGAGGAAGTT 11 V_YY1_Q6_02_M01035 TRANSFAC - 66456401 66456411 4.0E-06 CTCTCCATTTT 11 V_XFD2_01_M00268 TRANSFAC - 66457032 66457045 0.0E+00 ATTATAAACAAATG 14 V_HNF4_DR1_Q3_M00764 TRANSFAC + 66456910 66456922 1.0E-05 TGAACTTTAAGCT 13 V_MAFK_Q3_M02022 TRANSFAC + 66461901 66461911 8.0E-06 TGTCTCAGCAC 11 V_BLIMP1_Q6_M01066 TRANSFAC + 66462214 66462229 5.0E-06 CAGGCTGGGAAAGGGA 16 V_FOXM1_01_M00630 TRANSFAC + 66456968 66456976 4.0E-06 AGATTGAGT 9 V_NKX32_02_M01482 TRANSFAC - 66456972 66456988 4.0E-06 AAAAAACACTTAACTCA 17 V_NEUROD_02_M01288 TRANSFAC + 66460818 66460829 1.0E-06 CTGCTGCTGTGT 12 V_HFH8_01_M00294 TRANSFAC + 66457033 66457045 6.0E-06 ATTTGTTTATAAT 13 V_MTF1_06_M02882 TRANSFAC - 66457034 66457047 7.0E-06 AGATTATAAACAAA 14 V_FOXL1_04_M02753 TRANSFAC - 66457031 66457047 1.0E-06 AGATTATAAACAAATGA 17 V_NKX22_01_M00485 TRANSFAC + 66456976 66456985 2.0E-06 TTAAGTGTTT 10 V_FOXO3_01_M00477 TRANSFAC + 66457032 66457045 3.0E-06 CATTTGTTTATAAT 14 V_TBX15_02_M01264 TRANSFAC - 66456954 66456971 9.0E-06 ATCTGTGGAGGTCAGAAA 18 V_SPIC_02_M02077 TRANSFAC - 66456419 66456428 3.0E-06 TGAGGAAGTT 10 V_SOX8_03_M02808 TRANSFAC + 66457028 66457044 8.0E-06 GGATCATTTGTTTATAA 17 V_SRF_06_M02916 TRANSFAC - 66456977 66456993 5.0E-06 CAAAGAAAAAACACTTA 17 V_SRF_06_M02916 TRANSFAC - 66456980 66456996 3.0E-06 GCTCAAAGAAAAAACAC 17 V_YY1_01_M00059 TRANSFAC - 66456396 66456412 4.0E-06 GCTCTCCATTTTCAGTG 17 V_BARHL2_01_M01446 TRANSFAC - 66456973 66456988 3.0E-06 AAAAAACACTTAACTC 16 V_SP1_Q2_01_M00933 TRANSFAC + 66461150 66461159 7.0E-06 CCCCGCCCCT 10 V_RXRLXRB_01_M01198 TRANSFAC - 66456910 66456922 4.0E-06 AGCTTAAAGTTCA 13 V_SP1_Q4_01_M00932 TRANSFAC - 66461148 66461160 6.0E-06 CAGGGGCGGGGCG 13 V_OBOX6_02_M03068 TRANSFAC - 66457039 66457053 8.0E-06 AGAAGCAGATTATAA 15 V_FOXK1_03_M02752 TRANSFAC - 66457031 66457047 0.0E+00 AGATTATAAACAAATGA 17 V_PAX4_04_M00380 TRANSFAC + 66456911 66456940 3.0E-06 GAACTTTAAGCTCAACTCAAGAAACACACC 30 V_SPIB_03_M02076 TRANSFAC - 66456419 66456428 2.0E-06 TGAGGAAGTT 10 V_NF1_Q6_M00193 TRANSFAC - 66456483 66456500 4.0E-06 ATTTGGCCTGGACCCAAA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.