Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ADRA1D Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 146 adrenoceptor alpha 1D chr20 - 4229159 - 4234659 4229659 Transcription Factor Binding Sites   Download all TFBS in the ADRA1D promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 4232837 4232854 7.0E-06 TTCATTATAATCCAAATA 18 SOX10_HMG_full_dimeric_15_3 SELEX + 4232854 4232868 2.0E-06 ATGAATGTGAGTCAG 15 SOX21_HMG_DBD_dimeric_13_2 SELEX + 4232855 4232867 1.0E-06 TGAATGTGAGTCA 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 4232855 4232867 2.0E-06 TGACTCACATTCA 13 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 4225708 4225720 6.0E-06 CAAAGGTCATGGA 13 SOX9_HMG_full_dimeric_17_3 SELEX + 4232853 4232869 1.0E-06 AATGAATGTGAGTCAGA 17 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 4225703 4225716 1.0E-05 AGGAGCAAAGGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 4225703 4225716 3.0E-06 AGGAGCAAAGGTCA 14 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 4225750 4225759 2.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 4225750 4225759 2.0E-06 GTCACGTGAC 10 NFIX_NFI_full_dimeric_15_2 SELEX + 4225953 4225967 3.0E-06 ATGGCAAGGTGCCAT 15 NFIX_NFI_full_dimeric_15_2 SELEX - 4225953 4225967 2.0E-06 ATGGCACCTTGCCAT 15 SOX7_HMG_full_dimeric_17_2 SELEX + 4232853 4232869 2.0E-06 AATGAATGTGAGTCAGA 17 STAT1_MA0137.2 JASPAR + 4225732 4225746 7.0E-06 GACTTCCTGGAAGAG 15 STAT1_MA0137.2 JASPAR - 4225732 4225746 1.0E-06 CTCTTCCAGGAAGTC 15 SOX15_HMG_full_dimeric_15_3 SELEX - 4232854 4232868 0.0E+00 CTGACTCACATTCAT 15 NR2F1_MA0017.1 JASPAR - 4225703 4225716 1.0E-06 TGACCTTTGCTCCT 14 Spz1_MA0111.1 JASPAR + 4230463 4230473 7.0E-06 AGGGTTTCAGA 11 USF1_bHLH_DBD_dimeric_10_1 SELEX + 4225750 4225759 3.0E-06 GTCACGTGAC 10 USF1_bHLH_DBD_dimeric_10_1 SELEX - 4225750 4225759 3.0E-06 GTCACGTGAC 10 SOX8_HMG_full_dimeric_13_1 SELEX + 4232854 4232866 3.0E-06 ATGAATGTGAGTC 13 Sox17_HMG_DBD_dimeric_15_2 SELEX + 4232854 4232868 3.0E-06 ATGAATGTGAGTCAG 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 4232854 4232868 2.0E-06 CTGACTCACATTCAT 15 SOX2_HMG_full_dimeric_15_1 SELEX + 4232854 4232868 6.0E-06 ATGAATGTGAGTCAG 15 SOX2_HMG_full_dimeric_15_1 SELEX - 4232854 4232868 1.0E-06 CTGACTCACATTCAT 15 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 4225750 4225759 1.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 4225750 4225759 1.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 4225750 4225759 3.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 4225750 4225759 3.0E-06 GTCACGTGAC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 4225703 4225717 3.0E-06 AGGAGCAAAGGTCAT 15 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 4225750 4225759 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 4225750 4225759 3.0E-06 GTCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 4225750 4225759 3.0E-06 GTCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 4225750 4225759 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 4225750 4225759 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 4225750 4225759 3.0E-06 GTCACGTGAC 10 SOX14_HMG_DBD_dimeric_15_1 SELEX - 4232854 4232868 1.0E-06 CTGACTCACATTCAT 15 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 4225703 4225716 9.0E-06 AGGAGCAAAGGTCA 14 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX + 4225703 4225717 4.0E-06 AGGAGCAAAGGTCAT 15 Stat3_MA0144.1 JASPAR - 4225734 4225743 1.0E-06 TTCCAGGAAG 10 Stat3_MA0144.1 JASPAR + 4225735 4225744 2.0E-06 TTCCTGGAAG 10 Pou5f1_MA0142.1 JASPAR - 4232838 4232852 5.0E-06 CATTATAATCCAAAT 15 HNF4A_MA0114.1 JASPAR + 4225704 4225716 1.0E-06 GGAGCAAAGGTCA 13 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 4225750 4225759 4.0E-06 GTCACGTGAC 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 4225750 4225759 4.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 4225750 4225759 8.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 4225750 4225759 8.0E-06 GTCACGTGAC 10 Sox3_HMG_DBD_dimeric_17_3 SELEX + 4232853 4232869 1.0E-06 AATGAATGTGAGTCAGA 17 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 4225703 4225716 1.0E-06 AGGAGCAAAGGTCA 14 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 4225636 4225649 7.0E-06 ATTCCCTACACCAC 14 MLX_bHLH_full_dimeric_10_1 SELEX + 4225750 4225759 5.0E-06 GTCACGTGAC 10 MLX_bHLH_full_dimeric_10_1 SELEX - 4225750 4225759 5.0E-06 GTCACGTGAC 10 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 4232837 4232854 6.0E-06 TTCATTATAATCCAAATA 18 Sox2_MA0143.1 JASPAR - 4232839 4232853 9.0E-06 TCATTATAATCCAAA 15 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 4225703 4225716 7.0E-06 AGGAGCAAAGGTCA 14 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 4225750 4225759 1.0E-06 GTCACGTGAC 10 Sox1_HMG_DBD_dimeric_15_2 SELEX + 4232854 4232868 7.0E-06 ATGAATGTGAGTCAG 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 4232854 4232868 1.0E-06 CTGACTCACATTCAT 15 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 4225750 4225759 2.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 4225750 4225759 2.0E-06 GTCACGTGAC 10 V_FOXP1_01_M00987 TRANSFAC - 4225973 4225992 4.0E-06 TTGTTTGTCTTTGAGATTTA 20 V_CEBPG_Q6_M00622 TRANSFAC - 4232889 4232901 1.0E-06 CTCATGTAAGAAT 13 V_USF_Q6_M00187 TRANSFAC + 4225750 4225759 4.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC - 4225750 4225759 4.0E-06 GTCACGTGAC 10 V_TCF3_01_M01594 TRANSFAC - 4225973 4225985 7.0E-06 TCTTTGAGATTTA 13 V_FLI1_Q6_M01208 TRANSFAC - 4225730 4225740 1.0E-06 CAGGAAGTCAT 11 V_DUXL_01_M01390 TRANSFAC - 4225790 4225806 4.0E-06 TGTTCCAATCAACACTG 17 V_SOX40_04_M02908 TRANSFAC + 4232840 4232855 2.0E-06 TTGGATTATAATGAAT 16 V_SOX40_04_M02908 TRANSFAC - 4232840 4232855 1.0E-06 ATTCATTATAATCCAA 16 V_SRY_07_M02813 TRANSFAC + 4232840 4232855 1.0E-06 TTGGATTATAATGAAT 16 V_SRY_07_M02813 TRANSFAC - 4232840 4232855 3.0E-06 ATTCATTATAATCCAA 16 V_YY1_02_M00069 TRANSFAC - 4225872 4225891 9.0E-06 GCTGGGCCATTTTCACAGCA 20 V_ETS_B_M00340 TRANSFAC + 4232759 4232772 7.0E-06 TGCAGGAAGCATGA 14 V_POU5F1_02_M02245 TRANSFAC - 4232838 4232852 5.0E-06 CATTATAATCCAAAT 15 V_NR2F2_03_M02783 TRANSFAC + 4225705 4225720 2.0E-06 GAGCAAAGGTCATGGA 16 V_ZFP740_03_M02834 TRANSFAC + 4225623 4225638 2.0E-06 CCTCCACCCCCCAATT 16 V_ZFP740_03_M02834 TRANSFAC + 4225624 4225639 4.0E-06 CTCCACCCCCCAATTC 16 V_ARNT_01_M00236 TRANSFAC + 4225747 4225762 4.0E-06 GGAGTCACGTGACGTG 16 V_PITX3_Q2_M01735 TRANSFAC + 4232841 4232849 4.0E-06 TGGATTATA 9 V_EAR2_Q2_M01728 TRANSFAC - 4225703 4225716 2.0E-06 TGACCTTTGCTCCT 14 V_HNF3_Q6_01_M01012 TRANSFAC - 4225979 4225996 3.0E-06 TGTTTTGTTTGTCTTTGA 18 V_HNF4A_03_M02220 TRANSFAC + 4225704 4225716 1.0E-06 GGAGCAAAGGTCA 13 V_PPAR_DR1_Q2_M00763 TRANSFAC - 4225704 4225716 2.0E-06 TGACCTTTGCTCC 13 V_COUPTF_Q6_M01036 TRANSFAC - 4225699 4225721 0.0E+00 TTCCATGACCTTTGCTCCTTGCT 23 V_SOX21_03_M02803 TRANSFAC + 4232840 4232855 1.0E-06 TTGGATTATAATGAAT 16 V_SOX21_03_M02803 TRANSFAC - 4232840 4232855 7.0E-06 ATTCATTATAATCCAA 16 V_NFAT2_01_M01748 TRANSFAC + 4225716 4225724 5.0E-06 ATGGAAATT 9 V_TCFAP2C_04_M02925 TRANSFAC - 4230268 4230281 3.0E-06 GCGCCCAAGGGCAC 14 V_PPARGRXRA_01_M02262 TRANSFAC + 4225702 4225716 4.0E-06 AAGGAGCAAAGGTCA 15 V_SREBP1_01_M00220 TRANSFAC - 4225750 4225760 5.0E-06 CGTCACGTGAC 11 V_MYCMAX_02_M00123 TRANSFAC + 4225644 4225655 9.0E-06 CACCACATGTGA 12 V_HNF4_01_B_M00411 TRANSFAC + 4225703 4225717 0.0E+00 AGGAGCAAAGGTCAT 15 V_COUP_01_M00158 TRANSFAC - 4225703 4225716 1.0E-06 TGACCTTTGCTCCT 14 V_STAT1_01_M00224 TRANSFAC + 4225729 4225749 1.0E-05 GATGACTTCCTGGAAGAGGGA 21 V_SP1_Q6_M00196 TRANSFAC + 4229945 4229957 5.0E-06 GGGGGGCGGGACC 13 V_STAT5A_02_M00460 TRANSFAC + 4232878 4232901 5.0E-06 TTCCCGAAATGATTCTTACATGAG 24 V_SFPI1_04_M02896 TRANSFAC - 4232876 4232889 4.0E-06 TCATTTCGGGAACA 14 V_DUXBL_01_M02968 TRANSFAC - 4225790 4225806 4.0E-06 TGTTCCAATCAACACTG 17 V_HBP1_03_M02762 TRANSFAC + 4232847 4232862 0.0E+00 ATAATGAATGAATGTG 16 V_USF_01_M00121 TRANSFAC + 4225748 4225761 8.0E-06 GAGTCACGTGACGT 14 V_USF_01_M00121 TRANSFAC - 4225748 4225761 8.0E-06 ACGTCACGTGACTC 14 V_ERBETA_Q5_M01875 TRANSFAC + 4225876 4225890 1.0E-05 GTGAAAATGGCCCAG 15 V_PAX8_01_M00717 TRANSFAC + 4232845 4232859 5.0E-06 TTATAATGAATGAAT 15 V_HNF4A_Q6_01_M02016 TRANSFAC + 4225705 4225719 2.0E-06 GAGCAAAGGTCATGG 15 V_HNF4_DR1_Q3_M00764 TRANSFAC - 4225704 4225716 3.0E-06 TGACCTTTGCTCC 13 V_TCF1_07_M02919 TRANSFAC + 4232836 4232849 2.0E-06 TTATTTGGATTATA 14 V_STAT3_03_M01595 TRANSFAC - 4225730 4225745 1.0E-06 TCTTCCAGGAAGTCAT 16 V_STAT3_03_M01595 TRANSFAC + 4225733 4225748 1.0E-06 ACTTCCTGGAAGAGGG 16 V_CTCF_01_M01200 TRANSFAC + 4230327 4230346 7.0E-06 TTGGCCGCCAGAGAGCAGCA 20 V_SOX17_04_M02904 TRANSFAC + 4225960 4225976 2.0E-06 GGTGCCATTCATATAAA 17 V_SOX17_04_M02904 TRANSFAC - 4232849 4232865 1.0E-06 ACTCACATTCATTCATT 17 V_MAF_Q6_01_M00983 TRANSFAC - 4227539 4227549 6.0E-06 GGCTGAGTCAG 11 V_MAZR_01_M00491 TRANSFAC + 4232120 4232132 6.0E-06 AGGGGTGGGGACA 13 V_STRA13_01_M00985 TRANSFAC + 4225748 4225761 7.0E-06 GAGTCACGTGACGT 14 V_STRA13_01_M00985 TRANSFAC - 4225748 4225761 5.0E-06 ACGTCACGTGACTC 14 V_TFEB_01_M01768 TRANSFAC + 4225750 4225759 3.0E-06 GTCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 4225750 4225759 3.0E-06 GTCACGTGAC 10 V_DR1_Q3_M00762 TRANSFAC + 4225704 4225716 5.0E-06 GGAGCAAAGGTCA 13 V_CAAT_C_M00200 TRANSFAC - 4232726 4232750 0.0E+00 TCCAAACAACTTACTTTGCGCATTC 25 V_FOXL1_02_M02857 TRANSFAC - 4232832 4232847 8.0E-06 TAATCCAAATAAATCC 16 NR1H2_RXRA_MA0115.1 JASPAR + 4225702 4225718 4.0E-06 AAGGAGCAAAGGTCATG 17 V_MAX_04_M02881 TRANSFAC + 4225748 4225761 7.0E-06 GAGTCACGTGACGT 14 V_HNF4_Q6_01_M01031 TRANSFAC + 4225704 4225717 1.0E-06 GGAGCAAAGGTCAT 14 V_PARP_Q3_M01211 TRANSFAC + 4225815 4225824 8.0E-06 TTAGAAAAAC 10 V_PARP_Q3_M01211 TRANSFAC - 4230437 4230446 8.0E-06 TGAGAAAAAG 10 V_AIRE_01_M00999 TRANSFAC + 4225709 4225734 9.0E-06 AAAGGTCATGGAAATTAAGGGATGAC 26 V_NRF2_Q4_M00821 TRANSFAC - 4227538 4227550 5.0E-06 AGGCTGAGTCAGG 13 V_ASCL2_04_M02841 TRANSFAC - 4232118 4232133 5.0E-06 TTGTCCCCACCCCTTC 16 V_PITX2_Q2_M00482 TRANSFAC - 4232839 4232849 2.0E-06 TATAATCCAAA 11 V_ESRRA_03_M02748 TRANSFAC + 4225705 4225721 9.0E-06 GAGCAAAGGTCATGGAA 17 V_OCT1_07_M00248 TRANSFAC + 4225713 4225724 7.0E-06 GTCATGGAAATT 12 V_RARA_03_M02787 TRANSFAC + 4225705 4225720 3.0E-06 GAGCAAAGGTCATGGA 16 V_SOX2_01_M02246 TRANSFAC - 4232839 4232853 9.0E-06 TCATTATAATCCAAA 15 V_FOXJ2_01_M00422 TRANSFAC + 4225979 4225996 1.0E-06 TCAAAGACAAACAAAACA 18 V_CTF1_01_M01196 TRANSFAC - 4225953 4225966 1.0E-06 TGGCACCTTGCCAT 14 V_CTF1_01_M01196 TRANSFAC + 4225954 4225967 2.0E-06 TGGCAAGGTGCCAT 14 V_HNF4_01_M00134 TRANSFAC + 4225701 4225719 1.0E-06 CAAGGAGCAAAGGTCATGG 19 TLX1_NFIC_MA0119.1 JASPAR - 4225953 4225966 1.0E-06 TGGCACCTTGCCAT 14 TLX1_NFIC_MA0119.1 JASPAR + 4225954 4225967 2.0E-06 TGGCAAGGTGCCAT 14 V_STAT1_05_M01260 TRANSFAC + 4225732 4225753 3.0E-06 GACTTCCTGGAAGAGGGAGTCA 22 PPARG_RXRA_MA0065.2 JASPAR + 4225702 4225716 4.0E-06 AAGGAGCAAAGGTCA 15 V_SOX14_03_M02798 TRANSFAC + 4232840 4232855 4.0E-06 TTGGATTATAATGAAT 16 V_PPARG_01_M00512 TRANSFAC + 4225700 4225720 7.0E-06 GCAAGGAGCAAAGGTCATGGA 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.