Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CSNK2A1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1457 casein kinase 2, alpha 1 polypeptide chr20 - 523982 - 529482 524482 Transcription Factor Binding Sites   Download all TFBS in the CSNK2A1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX + 524177 524187 6.0E-06 TATGTGTGAAG 11 HSF2_HSF_DBD_trimeric_13_1 SELEX + 525288 525300 1.0E-06 TTCCGGAAGATTC 13 GABPA_MA0062.2 JASPAR + 524448 524458 7.0E-06 CCGGAAGCGGA 11 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 524659 524675 4.0E-06 GTTAACAAGTGACAACA 17 HSF1_HSF_full_trimeric_13_1 SELEX + 525288 525300 1.0E-06 TTCCGGAAGATTC 13 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 524542 524558 3.0E-06 AAGGTTACAATAGGACA 17 EWSR1-FLI1_MA0149.1 JASPAR + 524904 524921 2.0E-06 GGAAGAAGTGAATGAAAG 18 STAT1_MA0137.2 JASPAR + 525319 525333 3.0E-06 CAATTCCTGGAACTT 15 Spz1_MA0111.1 JASPAR + 524866 524876 1.0E-06 AGGGTTTCAGC 11 RELA_MA0107.1 JASPAR - 524456 524465 9.0E-06 GGGGGTTTCC 10 HSF4_HSF_DBD_trimeric_13_1 SELEX + 525288 525300 1.0E-06 TTCCGGAAGATTC 13 SP1_MA0079.2 JASPAR + 524001 524010 9.0E-06 CCCCTCCTCC 10 Otx1_homeodomain_DBD_dimeric_15_1 SELEX - 524634 524648 7.0E-06 TAAAATGCGCTTAAC 15 SOX14_HMG_DBD_dimeric_15_1 SELEX + 520558 520572 9.0E-06 GAGAATAACAGTTAG 15 YY2_C2H2_full_monomeric_11_1 SELEX - 524369 524379 5.0E-06 GCCGCCATATT 11 YY2_C2H2_full_monomeric_11_1 SELEX - 524725 524735 1.0E-06 ACCGCCATCTT 11 TBX20_TBX_full_dimeric_16_1 SELEX + 524178 524193 7.0E-06 ATGTGTGAAGGTGGGG 16 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 520573 520580 1.0E-05 ACATTCCA 8 TBX20_TBX_DBD_monomeric_15_1 SELEX + 524174 524188 9.0E-06 GTTTATGTGTGAAGG 15 ETV6_ETS_full_dimeric_15_1 SELEX + 524448 524462 0.0E+00 CCGGAAGCGGAAACC 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 520598 520610 2.0E-06 GTAAAAGAAAACA 13 V_FOXP1_01_M00987 TRANSFAC - 520932 520951 4.0E-06 TTATTTGTGAATGTGAACTT 20 V_NFKB_C_M00208 TRANSFAC + 520642 520653 2.0E-06 AGGGAATCTCCA 12 V_AP1_Q2_M00173 TRANSFAC - 520724 520734 1.0E-06 GGTGACTCAGA 11 V_NFKB_Q6_01_M00774 TRANSFAC - 520642 520657 5.0E-06 GGAATGGAGATTCCCT 16 V_BCL6_Q3_01_M02085 TRANSFAC - 524773 524782 9.0E-06 TTTTCAAGAA 10 V_CDX2_Q5_01_M01659 TRANSFAC - 520740 520750 4.0E-06 TTCATAAAAGA 11 V_ALX4_01_M00619 TRANSFAC + 520667 520679 7.0E-06 CCTGGGAAAAATC 13 V_NRSF_Q4_M01028 TRANSFAC + 524343 524361 1.0E-06 CCGCTCTCCCCTCTGCTCA 19 V_HOXA13_02_M01297 TRANSFAC - 524643 524651 4.0E-06 AAATAAAAT 9 V_RELBP52_01_M01239 TRANSFAC - 524456 524465 3.0E-06 GGGGGTTTCC 10 V_GABP_B_M00341 TRANSFAC + 524447 524458 8.0E-06 GCCGGAAGCGGA 12 V_DR4_Q2_M00965 TRANSFAC + 524542 524558 2.0E-06 TGTCCTATTGTAACCTT 17 V_EGR_Q6_M00807 TRANSFAC + 524188 524198 1.0E-05 GTGGGGGCAGG 11 V_TBR2_01_M01774 TRANSFAC + 524178 524186 8.0E-06 ATGTGTGAA 9 V_STAT5B_01_M00459 TRANSFAC + 525319 525333 1.0E-06 CAATTCCTGGAACTT 15 V_STAT5B_01_M00459 TRANSFAC - 525319 525333 4.0E-06 AAGTTCCAGGAATTG 15 V_SP1_03_M02281 TRANSFAC + 524001 524010 9.0E-06 CCCCTCCTCC 10 V_OCT_C_M00210 TRANSFAC - 520744 520756 9.0E-06 TTGCTTTTCATAA 13 V_AR_03_M00956 TRANSFAC - 524673 524699 7.0E-06 CTAATGGGAGGTTCGTGTTCTCTCTGT 27 V_AP1_Q6_M00174 TRANSFAC - 520724 520734 1.0E-05 GGTGACTCAGA 11 V_GC_01_M00255 TRANSFAC - 524496 524509 6.0E-06 TGGGGGCGGAGTCG 14 V_TCF3_04_M02816 TRANSFAC - 520736 520752 6.0E-06 TTTTCATAAAAGAATCA 17 V_ZFP410_03_M02832 TRANSFAC + 524532 524548 9.0E-06 CATGCTGGGATGTCCTA 17 V_STAF_01_M00262 TRANSFAC + 523913 523934 2.0E-06 ACTACCCAGCAGGCACCACTCC 22 V_STAF_01_M00262 TRANSFAC - 524809 524830 4.0E-06 AGCTCCCAGAATGCTTGGCTCT 22 V_ZBP89_Q4_M01816 TRANSFAC + 523942 523951 4.0E-06 CCCTCCCCCA 10 V_NFKB_Q6_M00194 TRANSFAC + 520641 520654 7.0E-06 TAGGGAATCTCCAT 14 V_AP1_Q4_M00188 TRANSFAC - 520724 520734 4.0E-06 GGTGACTCAGA 11 V_SP1_Q6_M00196 TRANSFAC + 524473 524485 8.0E-06 AGGAGGCGGGGCG 13 V_ZBTB7B_03_M02826 TRANSFAC - 520802 520816 7.0E-06 GGACCCCCCAAATTC 15 V_SFPI1_04_M02896 TRANSFAC + 525284 525297 5.0E-06 CAAATTCCGGAAGA 14 V_GLIS2_03_M02759 TRANSFAC - 520804 520819 1.0E-06 GTTGGACCCCCCAAAT 16 V_YY1_Q6_02_M01035 TRANSFAC - 524369 524379 4.0E-06 GCCGCCATATT 11 V_YY1_Q6_02_M01035 TRANSFAC - 524585 524595 9.0E-06 CCTTCCATTTT 11 V_HBP1_03_M02762 TRANSFAC + 524908 524923 9.0E-06 GAAGTGAATGAAAGTT 16 V_SP1SP3_Q4_M01219 TRANSFAC + 524000 524010 1.0E-05 CCCCCTCCTCC 11 V_TAL1BETAE47_01_M00065 TRANSFAC + 524700 524715 9.0E-06 GTGAACAGTTGGTTTG 16 V_SPIB_01_M01204 TRANSFAC + 525285 525301 5.0E-06 AAATTCCGGAAGATTCC 17 V_TCF7_03_M02817 TRANSFAC - 520736 520752 7.0E-06 TTTTCATAAAAGAATCA 17 V_STAF_02_M00264 TRANSFAC - 524810 524830 5.0E-06 AGCTCCCAGAATGCTTGGCTC 21 V_NR1B1_Q6_M02110 TRANSFAC + 520931 520940 9.0E-06 AAAGTTCACA 10 V_SOX17_04_M02904 TRANSFAC + 520934 520950 1.0E-06 GTTCACATTCACAAATA 17 V_HBP1_04_M02866 TRANSFAC + 524541 524557 8.0E-06 ATGTCCTATTGTAACCT 17 V_ZFP105_04_M02931 TRANSFAC + 524646 524662 7.0E-06 TTATTTCAATAGTGTTA 17 V_YY1_03_M02044 TRANSFAC - 524368 524379 1.0E-06 GCCGCCATATTG 12 V_GATA1_05_M00346 TRANSFAC - 520776 520785 6.0E-06 GCTGATAAAA 10 V_LBP9_01_M01592 TRANSFAC + 520617 520633 1.0E-05 CCGGTCCAAAGCAGTTT 17 V_E2F_Q6_01_M00920 TRANSFAC - 523889 523900 6.0E-06 CTCCCGCGAAAC 12 V_AP1FJ_Q2_M00172 TRANSFAC - 520724 520734 1.0E-06 GGTGACTCAGA 11 V_LUN1_01_M00480 TRANSFAC - 524305 524321 4.0E-06 CCACAGGTACCTAGGGA 17 V_PLAG1_01_M01778 TRANSFAC - 523954 523969 7.0E-06 GGGGCCGCAGGGGGGT 16 V_RBPJK_01_M01112 TRANSFAC - 524743 524753 4.0E-06 AGTGTGGGAAA 11 V_ZFP281_01_M01597 TRANSFAC - 524001 524011 7.0E-06 TGGAGGAGGGG 11 V_E2F_Q4_01_M00919 TRANSFAC - 523889 523899 1.0E-05 TCCCGCGAAAC 11 V_RARA_03_M02787 TRANSFAC + 520927 520942 6.0E-06 CATTAAAGTTCACATT 16 V_STAT5A_01_M00457 TRANSFAC + 525319 525333 0.0E+00 CAATTCCTGGAACTT 15 V_STAT5A_01_M00457 TRANSFAC - 525319 525333 2.0E-06 AAGTTCCAGGAATTG 15 V_MYF6_03_M02781 TRANSFAC + 524699 524714 2.0E-06 GGTGAACAGTTGGTTT 16 V_HSF2_02_M01244 TRANSFAC - 525288 525300 2.0E-06 GAATCTTCCGGAA 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 524904 524921 2.0E-06 GGAAGAAGTGAATGAAAG 18 V_SOX1_03_M02802 TRANSFAC + 524644 524659 5.0E-06 TTTTATTTCAATAGTG 16 V_IRF1_01_M00062 TRANSFAC + 520748 520760 7.0E-06 GAAAAGCAACACA 13 V_SOX15_04_M02903 TRANSFAC + 524911 524925 5.0E-06 GTGAATGAAAGTTGG 15 V_PAX4_04_M00380 TRANSFAC + 520944 520973 1.0E-05 ACAAATAAACCAGGCTGCACATTTAATACT 30 V_HSF1_Q6_01_M02017 TRANSFAC - 525287 525300 3.0E-06 GAATCTTCCGGAAT 14 V_ER_Q6_M00191 TRANSFAC + 524703 524721 9.0E-06 AACAGTTGGTTTGACCCAA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.