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BEST3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 144453 bestrophin 3 chr12 - 70092696 - 70098196 70093196 Transcription Factor Binding Sites   Download all TFBS in the BEST3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 70092126 70092143 8.0E-06 GAGGTCATTATTTACAAC 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 70092126 70092143 5.0E-06 GTTGTAAATAATGACCTC 18 MYF6_bHLH_full_dimeric_10_1 SELEX - 70093244 70093253 9.0E-06 AGCAGCTGTT 10 DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 70093274 70093283 1.0E-05 TATAATTATA 10 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 70093274 70093283 1.0E-05 TATAATTATA 10 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 70095845 70095854 1.0E-06 CATAATTATC 10 Tp53_p53l_DBD_dimeric_18_1 SELEX - 70093165 70093182 8.0E-06 ACAAGTGGAAAAACATTT 18 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 70095745 70095756 4.0E-06 TGACAGCTGGCA 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 70095745 70095756 5.0E-06 TGCCAGCTGTCA 12 ZNF713_C2H2_full_monomeric_17_1 SELEX + 70097812 70097828 9.0E-06 TAGAAAAAAGATAGCAA 17 NFYA_MA0060.1 JASPAR - 70095720 70095735 7.0E-06 CACAACCAATAGGAGA 16 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 70095745 70095756 4.0E-06 TGACAGCTGGCA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 70095745 70095756 4.0E-06 TGCCAGCTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 70095745 70095756 3.0E-06 TGACAGCTGGCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 70095745 70095756 6.0E-06 TGCCAGCTGTCA 12 SCRT2_C2H2_DBD_monomeric_13_1 SELEX + 70093240 70093252 7.0E-06 AAGCAACAGCTGC 13 Pax4_MA0068.1 JASPAR - 70093142 70093171 4.0E-06 AACATTTAACCCCTGTTCTTGTCACACTCT 30 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 70095837 70095852 7.0E-06 TAAACAGGGATAATTA 16 IRF1_MA0050.1 JASPAR - 70095826 70095837 6.0E-06 AGAAATGAAACC 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 70095837 70095852 7.0E-06 TAAACAGGGATAATTA 16 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 70095745 70095756 3.0E-06 TGACAGCTGGCA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 70095745 70095756 7.0E-06 TGCCAGCTGTCA 12 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 70093244 70093253 1.0E-06 AACAGCTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 70093244 70093253 3.0E-06 AGCAGCTGTT 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 70093242 70093255 3.0E-06 GCAACAGCTGCTGA 14 NFATC1_NFAT_full_dimeric_20_1 SELEX - 70095842 70095861 4.0E-06 AGAGGAACATAATTATCCCT 20 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 70095745 70095756 2.0E-06 TGACAGCTGGCA 12 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 70095745 70095756 2.0E-06 TGCCAGCTGTCA 12 Myf_MA0055.1 JASPAR + 70093240 70093251 0.0E+00 AAGCAACAGCTG 12 Myf_MA0055.1 JASPAR + 70093243 70093254 2.0E-06 CAACAGCTGCTG 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 70097767 70097782 0.0E+00 CCAGAAAGAAGTATTA 16 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 70095745 70095756 4.0E-06 TGACAGCTGGCA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX + 70092039 70092050 1.0E-06 ATAAATAAGAAT 12 MSC_bHLH_full_dimeric_10_1 SELEX + 70093244 70093253 4.0E-06 AACAGCTGCT 10 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 70095745 70095756 3.0E-06 TGACAGCTGGCA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 70095745 70095756 2.0E-06 TGCCAGCTGTCA 12 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 70093275 70093282 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 70093275 70093282 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 70095846 70095853 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 70095846 70095853 4.0E-06 ATAATTAT 8 V_NFAT_Q4_01_M00935 TRANSFAC - 70093169 70093178 9.0E-06 GTGGAAAAAC 10 V_CEBPG_Q6_M00622 TRANSFAC + 70095829 70095841 6.0E-06 TTCATTTCTAAAC 13 V_E2A_Q6_01_M02088 TRANSFAC + 70093243 70093255 8.0E-06 CAACAGCTGCTGA 13 V_FREAC7_01_M00293 TRANSFAC + 70092034 70092049 3.0E-06 TAGTGATAAATAAGAA 16 V_GAF_Q6_M01209 TRANSFAC + 70095755 70095765 3.0E-06 CATATTCCCAG 11 V_FOXA2_04_M02749 TRANSFAC - 70092129 70092145 5.0E-06 GAGTTGTAAATAATGAC 17 V_DLX3_01_M01400 TRANSFAC + 70093270 70093286 2.0E-06 AAGCTATAATTATAACT 17 V_DLX3_01_M01400 TRANSFAC - 70093271 70093287 6.0E-06 GAGTTATAATTATAGCT 17 V_BCL6_01_M01183 TRANSFAC + 70092133 70092148 7.0E-06 TTATTTACAACTCTTT 16 V_AR_Q6_01_M01996 TRANSFAC + 70093109 70093123 3.0E-06 TTTCTTTCTGTTCTC 15 V_MEF2_02_M00231 TRANSFAC + 70093266 70093287 6.0E-06 TTCTAAGCTATAATTATAACTC 22 V_IRF_Q6_01_M00972 TRANSFAC - 70095827 70095837 7.0E-06 AGAAATGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC - 70095824 70095839 2.0E-06 TTAGAAATGAAACCAA 16 V_RFX4_03_M02789 TRANSFAC - 70097787 70097801 8.0E-06 GCACATAGCAACATA 15 V_IRF3_05_M02767 TRANSFAC - 70095825 70095838 5.0E-06 TAGAAATGAAACCA 14 V_DLX2_01_M01468 TRANSFAC + 70093272 70093287 1.0E-05 GCTATAATTATAACTC 16 V_AP4_Q6_01_M00927 TRANSFAC + 70093244 70093252 1.0E-05 AACAGCTGC 9 V_TCFAP2E_04_M02926 TRANSFAC + 70097809 70097822 6.0E-06 CTCTAGAAAAAAGA 14 V_CP2_02_M00947 TRANSFAC + 70097800 70097814 5.0E-06 GCTGGATTTCTCTAG 15 V_TST1_01_M00133 TRANSFAC + 70092038 70092052 3.0E-06 GATAAATAAGAATGG 15 V_MYF_01_M01302 TRANSFAC + 70093240 70093251 0.0E+00 AAGCAACAGCTG 12 V_MYF_01_M01302 TRANSFAC + 70093243 70093254 2.0E-06 CAACAGCTGCTG 12 V_FREAC3_01_M00291 TRANSFAC - 70092130 70092145 4.0E-06 GAGTTGTAAATAATGA 16 V_BEL1_B_M00312 TRANSFAC + 70092080 70092107 5.0E-06 TAAATGCTTAGGGATGGTTCACATTCTC 28 V_HNF3G_Q4_M02015 TRANSFAC - 70093231 70093238 7.0E-06 TGTTTGTT 8 V_SOX8_04_M02912 TRANSFAC - 70092160 70092173 0.0E+00 ACATTCATGAAATG 14 V_NFAT_Q6_M00302 TRANSFAC - 70093169 70093180 4.0E-06 AAGTGGAAAAAC 12 V_HOXA3_07_M02869 TRANSFAC - 70097764 70097777 8.0E-06 AAGAAGTATTAACA 14 V_IRF_Q6_M00772 TRANSFAC + 70093108 70093122 5.0E-06 TTTTCTTTCTGTTCT 15 V_IRF_Q6_M00772 TRANSFAC + 70095823 70095837 1.0E-06 GTTGGTTTCATTTCT 15 V_MEF2_03_M00232 TRANSFAC + 70093266 70093287 7.0E-06 TTCTAAGCTATAATTATAACTC 22 V_RFXDC2_03_M02790 TRANSFAC - 70097787 70097801 5.0E-06 GCACATAGCAACATA 15 V_ASCL2_03_M02737 TRANSFAC - 70093240 70093256 0.0E+00 ATCAGCAGCTGTTGCTT 17 V_ASCL2_03_M02737 TRANSFAC + 70093241 70093257 0.0E+00 AGCAACAGCTGCTGATG 17 V_ISRE_01_M00258 TRANSFAC + 70095825 70095839 4.0E-06 TGGTTTCATTTCTAA 15 V_IRF3_06_M02871 TRANSFAC + 70092044 70092057 8.0E-06 TAAGAATGGTGCAG 14 V_MEF2_Q6_01_M00941 TRANSFAC + 70093271 70093282 9.0E-06 AGCTATAATTAT 12 V_NKX3A_01_M00451 TRANSFAC + 70093273 70093284 1.0E-05 CTATAATTATAA 12 V_ISGF3G_03_M02771 TRANSFAC - 70095824 70095838 1.0E-06 TAGAAATGAAACCAA 15 V_ICSBP_Q6_M00699 TRANSFAC - 70095825 70095836 1.0E-06 GAAATGAAACCA 12 V_SOX17_04_M02904 TRANSFAC - 70092161 70092177 0.0E+00 AACCACATTCATGAAAT 17 V_GR_Q6_02_M01836 TRANSFAC + 70093112 70093124 1.0E-06 CTTTCTGTTCTCT 13 V_MYOD_Q6_02_M02100 TRANSFAC - 70095745 70095753 4.0E-06 CAGCTGTCA 9 V_IRF5_03_M02769 TRANSFAC - 70095824 70095838 9.0E-06 TAGAAATGAAACCAA 15 V_FOXL1_04_M02753 TRANSFAC - 70092129 70092145 5.0E-06 GAGTTGTAAATAATGAC 17 V_ZBTB4_04_M02929 TRANSFAC - 70093210 70093225 1.0E-05 CTATAACTGTCATCAG 16 V_NFY_01_M00287 TRANSFAC - 70095720 70095735 1.0E-05 CACAACCAATAGGAGA 16 V_MYB_Q5_01_M00913 TRANSFAC - 70093214 70093222 4.0E-06 TAACTGTCA 9 V_TCF4_Q5_M00671 TRANSFAC + 70093308 70093315 1.0E-05 CCTTTGAA 8 V_TITF1_Q3_M00432 TRANSFAC - 70092149 70092158 5.0E-06 ACTCAAGTAG 10 V_BARHL2_01_M01446 TRANSFAC - 70093160 70093175 5.0E-06 GAAAAACATTTAACCC 16 V_PIT1_Q6_M00802 TRANSFAC - 70092034 70092051 0.0E+00 CATTCTTATTTATCACTA 18 V_SOX15_04_M02903 TRANSFAC + 70093163 70093177 9.0E-06 TTAAATGTTTTTCCA 15 V_MEF2_01_M00006 TRANSFAC + 70093273 70093288 7.0E-06 CTATAATTATAACTCC 16 V_MEF2A_05_M01301 TRANSFAC + 70093271 70093282 4.0E-06 AGCTATAATTAT 12 V_MEF2A_05_M01301 TRANSFAC - 70093275 70093286 4.0E-06 AGTTATAATTAT 12 V_ZFP128_04_M02932 TRANSFAC + 70093272 70093285 4.0E-06 GCTATAATTATAAC 14 V_ZFP128_04_M02932 TRANSFAC - 70093272 70093285 2.0E-06 GTTATAATTATAGC 14 V_FOXK1_03_M02752 TRANSFAC - 70092129 70092145 4.0E-06 GAGTTGTAAATAATGAC 17 V_HOXC8_01_M01321 TRANSFAC + 70095841 70095856 6.0E-06 CAGGGATAATTATGTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.