Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TTC36 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 143941 tetratricopeptide repeat domain 36 chr11 + 118393209 - 118398709 118398209 Transcription Factor Binding Sites   Download all TFBS in the TTC36 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 118395543 118395555 8.0E-06 ATAGACCTAGTTA 13 Pax5_MA0014.1 JASPAR + 118395947 118395966 3.0E-06 AAATCCCTGAGGAGTAACAG 20 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 118393479 118393496 6.0E-06 CCAATTAATTACCAAACA 18 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 118401324 118401341 8.0E-06 GGGGGTCAGCGGAGGCCA 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 118393483 118393500 4.0E-06 TCAATGTTTGGTAATTAA 18 POU3F4_POU_DBD_monomeric_11_1 SELEX - 118395463 118395473 6.0E-06 TGCATTAATCA 11 EWSR1-FLI1_MA0149.1 JASPAR + 118401937 118401954 9.0E-06 GGGAGGGAGCCAGGTGAG 18 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 118401324 118401341 5.0E-06 GGGGGTCAGCGGAGGCCA 18 IRF7_IRF_DBD_trimeric_17_1 SELEX + 118395707 118395723 1.0E-05 AATGAGAAATTCCTCTT 17 Sox1_HMG_DBD_dimeric_13_1 SELEX - 118393270 118393282 8.0E-06 TCACTTACAGTGC 13 RUNX3_RUNX_full_monomeric_10_1 SELEX + 118395697 118395706 5.0E-06 CAACCACAAA 10 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 118401324 118401340 4.0E-06 GGGGTCAGCGGAGGCCA 17 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 118395794 118395805 6.0E-06 TTTCCCTACAAG 12 SP1_MA0079.2 JASPAR - 118401969 118401978 7.0E-06 CCCCGCCCCC 10 SOX14_HMG_DBD_dimeric_13_1 SELEX - 118393270 118393282 9.0E-06 TCACTTACAGTGC 13 znf143_MA0088.1 JASPAR + 118393638 118393657 8.0E-06 GCTTTCCCATGCTTCTTTCG 20 Lhx3_MA0135.1 JASPAR - 118395460 118395472 9.0E-06 GCATTAATCATTT 13 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 118401324 118401340 9.0E-06 GGGGTCAGCGGAGGCCA 17 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 118393479 118393496 8.0E-06 CCAATTAATTACCAAACA 18 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 118393483 118393497 1.0E-05 ATGTTTGGTAATTAA 15 FEV_MA0156.1 JASPAR - 118396039 118396046 1.0E-05 CAGGAAAT 8 RUNX1_MA0002.2 JASPAR - 118395697 118395707 9.0E-06 TTTTGTGGTTG 11 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 118395794 118395807 5.0E-06 TTTCCCTACAAGAG 14 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 118393479 118393496 5.0E-06 CCAATTAATTACCAAACA 18 NHLH1_bHLH_full_dimeric_10_1 SELEX - 118401600 118401609 9.0E-06 CGCAGCTGCC 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 118401077 118401089 4.0E-06 ATACACGAAAACA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 118395743 118395752 2.0E-06 ATTGCCAAAT 10 POU4F1_POU_DBD_monomeric_14_1 SELEX - 118395461 118395474 6.0E-06 GTGCATTAATCATT 14 V_FOXP1_01_M00987 TRANSFAC + 118401070 118401089 2.0E-06 ACGTTCATGTTTTCGTGTAT 20 V_DBX1_01_M01483 TRANSFAC + 118393480 118393496 2.0E-06 CAATTAATTACCAAACA 17 V_FREAC7_01_M00293 TRANSFAC + 118401035 118401050 9.0E-06 GACTCATAAACATAGT 16 V_OSF2_Q6_M00731 TRANSFAC + 118395699 118395706 1.0E-05 ACCACAAA 8 V_ATF5_01_M01295 TRANSFAC + 118393608 118393618 3.0E-06 TTTCTTCCTTT 11 V_XFD1_01_M00267 TRANSFAC + 118401037 118401050 6.0E-06 CTCATAAACATAGT 14 V_CEBP_Q3_M00770 TRANSFAC - 118393486 118393497 7.0E-06 ATGTTTGGTAAT 12 V_CEBP_Q3_M00770 TRANSFAC - 118395743 118395754 0.0E+00 AAATTTGGCAAT 12 V_AML3_Q6_M01856 TRANSFAC + 118395698 118395705 1.0E-05 AACCACAA 8 V_HOXA3_01_M00395 TRANSFAC + 118395688 118395696 4.0E-06 CCTAATTGT 9 V_DR4_Q2_M00965 TRANSFAC + 118401324 118401340 6.0E-06 TGGCCTCCGCTGACCCC 17 V_MEIS1AHOXA9_01_M00420 TRANSFAC + 118393325 118393338 6.0E-06 TGACAGTTTGCCAG 14 V_CEBP_C_M00201 TRANSFAC - 118395738 118395755 1.0E-06 AAAATTTGGCAATGGACT 18 V_NFAT3_Q3_M01734 TRANSFAC - 118401096 118401105 1.0E-05 TTATTTTCCA 10 V_HOXA4_01_M01370 TRANSFAC - 118393479 118393495 1.0E-06 GTTTGGTAATTAATTGG 17 V_CEBP_01_M00159 TRANSFAC - 118393484 118393496 1.0E-06 TGTTTGGTAATTA 13 V_CART1_02_M01362 TRANSFAC + 118393479 118393495 1.0E-05 CCAATTAATTACCAAAC 17 V_HOXC4_01_M01369 TRANSFAC + 118393479 118393495 1.0E-06 CCAATTAATTACCAAAC 17 V_SP1_03_M02281 TRANSFAC - 118401969 118401978 7.0E-06 CCCCGCCCCC 10 V_AP2_Q6_M00189 TRANSFAC + 118401360 118401371 9.0E-06 GTCCCGCAGGCG 12 V_HOXC6_01_M01406 TRANSFAC + 118393479 118393495 0.0E+00 CCAATTAATTACCAAAC 17 V_LHX3_01_M01471 TRANSFAC + 118393479 118393495 7.0E-06 CCAATTAATTACCAAAC 17 V_SP1_02_M01303 TRANSFAC + 118395521 118395531 5.0E-06 GGGGTGGGGGG 11 V_SP1_02_M01303 TRANSFAC - 118401873 118401883 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC + 118401970 118401980 8.0E-06 GGGGCGGGGGC 11 V_PU1_Q4_M01172 TRANSFAC + 118393600 118393618 7.0E-06 CACTCCCTTTTCTTCCTTT 19 V_AP4_Q6_01_M00927 TRANSFAC + 118395962 118395970 1.0E-05 AACAGCTGC 9 V_NFAT2_01_M01748 TRANSFAC + 118401095 118401103 8.0E-06 GTGGAAAAT 9 V_CEBPB_01_M00109 TRANSFAC - 118395741 118395754 5.0E-06 AAATTTGGCAATGG 14 V_VSX1_01_M01335 TRANSFAC + 118393479 118393495 7.0E-06 CCAATTAATTACCAAAC 17 V_WT1_Q6_01_M02036 TRANSFAC - 118401972 118401981 4.0E-06 CGCCCCCGCC 10 V_LHX61_01_M01314 TRANSFAC - 118395458 118395474 6.0E-06 GTGCATTAATCATTTCA 17 V_HOXA6_01_M01392 TRANSFAC + 118393480 118393495 1.0E-06 CAATTAATTACCAAAC 16 V_PR_Q2_M00960 TRANSFAC + 118402080 118402089 7.0E-06 GAGAGAACAG 10 V_LMX1_01_M01409 TRANSFAC + 118393479 118393495 4.0E-06 CCAATTAATTACCAAAC 17 V_HNF3G_Q4_M02015 TRANSFAC - 118393365 118393372 7.0E-06 TGTTTGTT 8 V_RUNX1_01_M02257 TRANSFAC - 118395697 118395707 9.0E-06 TTTTGTGGTTG 11 V_HOXA3_02_M01337 TRANSFAC - 118393482 118393495 4.0E-06 GTTTGGTAATTAAT 14 V_SP4_03_M02810 TRANSFAC + 118402469 118402485 1.0E-06 AGGCCCGCCCCCTTCTC 17 V_AML2_01_M01759 TRANSFAC + 118395698 118395705 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC + 118401870 118401883 6.0E-06 GCAGCCCCCGCCCC 14 V_KROX_Q6_M00982 TRANSFAC - 118401970 118401983 0.0E+00 CCCGCCCCCGCCCC 14 V_PXRRXR_02_M01153 TRANSFAC + 118393409 118393416 1.0E-05 AGAGTTCA 8 V_SP1_Q6_M00196 TRANSFAC + 118401968 118401980 4.0E-06 GGGGGGCGGGGGC 13 V_HOXA1_01_M01487 TRANSFAC - 118393480 118393495 8.0E-06 GTTTGGTAATTAATTG 16 V_IK1_01_M00086 TRANSFAC - 118395915 118395927 4.0E-06 TCTTGGGAATGAC 13 V_HNF3_Q6_M00791 TRANSFAC + 118393362 118393374 9.0E-06 TCGAACAAACAGA 13 V_EGR1_Q6_M01873 TRANSFAC + 118401973 118401982 4.0E-06 GCGGGGGCGG 10 V_MATH1_Q2_M01716 TRANSFAC + 118401538 118401547 3.0E-06 CCAGCTGGTG 10 V_PBX1_01_M00096 TRANSFAC - 118395462 118395470 1.0E-05 ATTAATCAT 9 V_ERR1_Q3_M01841 TRANSFAC + 118395487 118395501 9.0E-06 AATTCACCTTGAGAA 15 V_PEBP_Q6_M00984 TRANSFAC + 118395695 118395709 2.0E-06 GTCAACCACAAAAAT 15 V_PROP1_02_M01320 TRANSFAC + 118393479 118393495 6.0E-06 CCAATTAATTACCAAAC 17 V_LIM1_01_M01418 TRANSFAC + 118393479 118393495 5.0E-06 CCAATTAATTACCAAAC 17 V_HOXB4_01_M01424 TRANSFAC + 118393479 118393495 1.0E-06 CCAATTAATTACCAAAC 17 V_SP4_Q5_M01273 TRANSFAC + 118401337 118401347 7.0E-06 CCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 118401969 118401979 5.0E-06 CCCCCGCCCCC 11 V_PTF1BETA_Q6_M00657 TRANSFAC - 118393378 118393391 3.0E-06 GGGAAAACCACCAG 14 V_PTF1BETA_Q6_M00657 TRANSFAC + 118395628 118395641 2.0E-06 GAGGAACCCACAGC 14 V_HFH8_01_M00294 TRANSFAC - 118401037 118401049 6.0E-06 CTATGTTTATGAG 13 V_HOXA7_02_M01336 TRANSFAC + 118393479 118393495 1.0E-06 CCAATTAATTACCAAAC 17 V_CNOT3_01_M01253 TRANSFAC + 118401416 118401425 4.0E-06 GGCCGCGCCG 10 V_DELTAEF1_01_M00073 TRANSFAC + 118395488 118395498 9.0E-06 ATTCACCTTGA 11 V_SMAD3_03_M02794 TRANSFAC + 118393779 118393795 1.0E-06 CATAACCAGACAGAATT 17 V_E47_01_M00002 TRANSFAC - 118401806 118401820 8.0E-06 CCGGCAGGTGGGCGG 15 V_T3RBETA_Q6_01_M02119 TRANSFAC - 118401323 118401339 4.0E-06 GGGTCAGCGGAGGCCAG 17 V_ZFP281_01_M01597 TRANSFAC + 118395519 118395529 5.0E-06 AGGGGGTGGGG 11 V_HOXC5_01_M01454 TRANSFAC + 118393479 118393495 0.0E+00 CCAATTAATTACCAAAC 17 V_VAX1_01_M01397 TRANSFAC + 118393480 118393495 7.0E-06 CAATTAATTACCAAAC 16 V_EWSR1FLI1_01_M02252 TRANSFAC + 118401937 118401954 9.0E-06 GGGAGGGAGCCAGGTGAG 18 V_PPARG_02_M00515 TRANSFAC + 118395782 118395804 8.0E-06 AATAAGCGAAGGTTTCCCTACAA 23 V_LHX9_01_M01367 TRANSFAC + 118393479 118393495 9.0E-06 CCAATTAATTACCAAAC 17 V_BSX_01_M01442 TRANSFAC + 118393480 118393495 9.0E-06 CAATTAATTACCAAAC 16 V_SP1_Q2_01_M00933 TRANSFAC - 118401969 118401978 4.0E-06 CCCCGCCCCC 10 V_LHX5_01_M01353 TRANSFAC + 118393479 118393495 5.0E-06 CCAATTAATTACCAAAC 17 V_CEBP_Q2_01_M00912 TRANSFAC + 118395743 118395754 2.0E-06 ATTGCCAAATTT 12 V_LPOLYA_B_M00318 TRANSFAC + 118401684 118401691 7.0E-06 CAATAAAG 8 V_DLX1_01_M01439 TRANSFAC - 118393482 118393495 4.0E-06 GTTTGGTAATTAAT 14 V_SP1_Q4_01_M00932 TRANSFAC + 118401968 118401980 8.0E-06 GGGGGGCGGGGGC 13 V_BARX1_01_M01340 TRANSFAC + 118393480 118393495 5.0E-06 CAATTAATTACCAAAC 16 V_ELK1_03_M01163 TRANSFAC - 118393415 118393425 1.0E-05 AACCAGAAGTG 11 V_FEV_01_M02269 TRANSFAC - 118396039 118396046 1.0E-05 CAGGAAAT 8 V_HOXB5_01_M01319 TRANSFAC + 118393480 118393495 2.0E-06 CAATTAATTACCAAAC 16 V_HOX13_02_M01452 TRANSFAC + 118393480 118393495 6.0E-06 CAATTAATTACCAAAC 16 V_CEBPA_Q6_M01866 TRANSFAC - 118395742 118395754 4.0E-06 AAATTTGGCAATG 13 V_HOXC8_01_M01321 TRANSFAC - 118393480 118393495 1.0E-06 GTTTGGTAATTAATTG 16 V_IPF1_06_M01438 TRANSFAC + 118393480 118393495 2.0E-06 CAATTAATTACCAAAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.